Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.4e-09 5.1e-07 32.2 0.0 1 39 167 206 167 210 0.90

2 4 1.5e-11 1e-09 40.8 0.1 1 39 221 259 221 262 0.95

3 4 5.1e-17 3.6e-15 58.3 0.0 1 45 276 321 276 321 0.98

4 4 2.8 1.9e+02 4.7 0.1 1 13 328 340 328 340 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.4e-09	5.1e-07	32.2	0.0	1	39	167	206	167	210	0.90
2	4	1.5e-11	1e-09	40.8	0.1	1	39	221	259	221	262	0.95
3	4	5.1e-17	3.6e-15	58.3	0.0	1	45	276	321	276	321	0.98
4	4	2.8	1.9e+02	4.7	0.1	1	13	328	340	328	340	0.92

Coding Sequence: ATGTCCAAACTGCTGCAAACACTCTTGGAGGCAATCTTCTCGTCGTTTGACACCGATGACTTTCCGCCAGAGCCCCCTGCTCCCTCCGCCATCCCTGTGGGTCACATGGACATGTCGGAACATACGGCCACCATGCTGACAAACGTCCCTATTCACCGGACCGACCTGTCAGACGCAACGTCGAAGTATGCCGTGGAAATCAAAAAAGAAGCTGAAGTGAAGTTTGAAACTCTCCGTTCATTCGAACAAGATAGTCTACTGGAAATGGATTCGCATATGAGCGGGGATCACTCCATGGGATCACATGAAGATCTTGTAGAGCTGCATCATTCCAACCTGATGAGTTCCGATTACACTCCACCTTTACAGACTGGAATTCACAATAGATTagatatgagTGAAGGTAGTGACAACGGTGATACTTCTAGCTTAAAAACGAATGGCCACGGTGAACACCAAGGCGTGCGAGCACATAGTGCGGGAGGACCTAAAACGTGGACCCAGGAAGATATGGACATGGCGTTAGATGCACTCAAGAACCATAATATGAGCCttacaaaaGCATCGGCAACATACGGTATTCCTTCTACGACCCTGTGGCAAAGGGCCCATAGGTTAGGCATAGATACCCCCAAGAAGGAAGGACCGACGAAGTCTTGGACGGAGGAGAACCTGAACAATGCCTTGGAGGCCTTAAGGACGGGTACTATATCCGCTAATAAGGCTAGTAAGGCGTATGGTATTCCTAGCAGCACCCTGTACAAAATAGCGAGACGAGAAGGTATAAGACTGGCCGCGCCCTTCAACGCAGCACCAACCACGTGGACTCCCGAAGATTTAGAAAAGGCTTTGGAGTCGATTCGAACAGGTCAAACGTCCGTCCAAAAAGCTTCCACAGAGTTTGGCATTCCAACGGGCACGTTATACGGAAGGTGCAAGAGGGAAGGTATCGAGTTATCTCGGTCGAATCCCACGCCGTGGTCAGAAGACGCTATGGGAGAGGCGCTAGAAGCCGTTAGGTAG
Protein Sequence: MSKLLQTLLEAIFSSFDTDDFPPEPPAPSAIPVGHMDMSEHTATMLTNVPIHRTDLSDATSKYAVEIKKEAEVKFETLRSFEQDSLLEMDSHMSGDHSMGSHEDLVELHHSNLMSSDYTPPLQTGIHNRLDMSEGSDNGDTSSLKTNGHGEHQGVRAHSAGGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR

Sequence clustering based on sequence similarity using MMseqs2