Kgib029887.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- nfxl1
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000005.1:1502717-1505442[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 3.3e+04 -5.0 1.9 15 19 123 127 123 127 0.85 2 20 0.83 1.4e+04 -2.9 0.4 4 10 158 164 158 164 0.82 3 20 2.7e-08 0.00045 21.0 16.3 1 19 172 189 172 189 0.99 4 20 2 3.3e+04 -6.6 6.1 10 19 196 205 194 208 0.75 5 20 2.4e-06 0.04 14.8 17.2 3 19 227 243 215 243 0.86 6 20 6.7e-06 0.11 13.4 9.4 1 19 278 297 272 297 0.90 7 20 0.0019 31 5.6 13.0 1 18 333 350 333 351 0.97 8 20 0.014 2.3e+02 2.8 6.4 1 12 385 396 385 396 0.94 9 20 0.6 9.9e+03 -2.4 1.2 6 10 406 410 405 410 0.92 10 20 2.8e-07 0.0046 17.8 14.8 1 19 416 434 416 434 0.93 11 20 1.9 3.1e+04 -4.0 1.1 5 10 460 465 460 465 0.87 12 20 0.00015 2.5 9.1 7.3 10 19 481 490 478 490 0.90 13 20 0.00063 10 7.1 5.9 1 12 500 510 500 510 0.95 14 20 0.84 1.4e+04 -2.9 5.8 14 18 539 543 539 544 0.89 15 20 1.6 2.6e+04 -3.8 0.6 9 12 561 564 561 564 0.77 16 20 0.00022 3.7 8.5 6.4 1 12 580 591 574 591 0.92 17 20 1.6 2.7e+04 -3.8 3.1 5 10 603 608 601 608 0.85 18 20 0.0018 29 5.7 13.6 1 18 616 632 616 633 0.94 19 20 5.8e-06 0.097 13.6 10.5 1 18 678 697 678 698 0.91 20 20 0.034 5.7e+02 1.5 0.6 6 12 728 734 727 734 0.91
Sequence Information
- Coding Sequence
- ATGAGGAAGTTCAAAAGAGCCCAGGTGCAAAATCAAGAGTCTATTAAAAAGCATTTGGAGGCCAACGCCATTGAGTCTTCGAGTAGCGAGGATGACAACGAAGAAGTACTGGAGAGGGCGGTGAAAACAATTTTAACCAATTATCAATGCGAAGGTGGTAATGGCAATAAAACACTCTCGTATTTAACGGAAACCTTTCAGTCAGGTGGAATAGTCTGTTTGATATGTATTTCAACGGTGAAAAAAATCGATCCAATCTGGAGCTGCTCCAAGTGCTACACCTTTTTACATTTACCCTGCATTCAACATTGGGTGAGGGATAGCTTGAGTTATAAGCATGAAAAAGGAATTGTGCCTTCGTGGGGATGTCCAAAATGCAGAACGGAATATCAAAAGGACGAGATCCCACAGAGGTACTTGTGCTTTTGTGGAAAAGTTGAGAATCCAGCTTATCAGCCGTGGTCCGTGCCTCATTCCTGTGGAAATATGTGCGAAAAATTCCTGAAACCAAAGTGCGGCCACAAGTGCACGCTCCTGTGCCATCCCGGGGCCTGCCCCCCCTGCCCGAAAATGGTACCGGTCGCGTGCCACTGCGGCAAGGAAGCGCCTTGTCCCAGGAGATGCAACGCCAAGGAGTGGAGCTGCGGCAAGCCCTGCGGCAAGAAGTACGCGAGCTGCGAGCACAGGTGCGCGGACAAGTGCCACCCCGGGGCCTGCCCGCCTTGCTCGGAAGCTGTAGTTAGCCCCTGCAATTGCGGAGGCAAATCCGAGCTGAGAATGTGCAAGGAGTCGCTTTGGTCGTGCGACAAAATCTGCGGGAGGAGCTTCTCCTGCAACGTTCACGTTTGCGAGAGCGTCTGCCACAAGCCGGGGGACTGCGAGGTTTGCCCATTGGAGCGCAACCGATCCTGTCCCTGCGGCAAGAAGAAGTACAGCATATCCTGCAATCGGCAGCAGGCCCCGACCTGTGGCGACACCTGTGGAAAATTGCTCGACTGCGGGGCCCATTATTGCAACATGAGGTGCCACCCCGAGCACTGCGGCCAGTGCCTGGAGGTCGTGACCAAGACCTGCCGCTGCGGGAGCTTCAGCAAGGAGCTCCCCTGCGTTAAGGACTTTCACTGCAACAAGAAGTGCCCGCAGCTGAGGCTCTGCGGGGCCCACCTGTGCAACAGGAAGTGCTGCGACTGCCTTTCGACCAACAGCTTCAACCCCTGCGAGAAGGTCTGCTACAACACCCTGAACTGCCGTAAGCACAAGTGCCCGGCCACTTGCCACAGGGGCCCCTGCTACCCCTGCCCCCGGGTCGACGTCGTCCAGTGCCGCTGCGGCAGCAACAAGATCTCCCTGCCCTGCGGCTCGACCAAGAAGGTGCCCAACTGCAACAAGAAGTGCAGGGTGCCGCCGGTGTGCCACCACCCGAAGAGAGAGTCGCACAGGTGCCACCAGGGCGCCTGCCCTCCCTGTCGCAGGGTCTGCGGCTCGGTGCACCGGAAGTGCGGCCACGCCTGCCCGGCGGTCTGCCACACCAAGGTCAGGACGAGGGTCGAGCAGGGCTCCAATCAGGTGGGCCAGTGGCTGGGCCCGAGGGAGCGCTGGGAGTTAAAGTCCTTTCCCTGTCCCCCCTGCGAGGTCTCCGTCATGGTCACCTGCCTGGGGGGACACGAGACCCTGCCCTACCCCTGCCACAAGGCAGTGTCGGCCTCCTGCCTGAGGGAGTGCGGCCAGCGGCTCTCCTGCGCCAACCACCGATGCGAATTGCCCTGCCACGAGCTCGAGCCCGGCGCCGACCGGGCCAGCTGCGCCAGCTGCGAAAGACCCTGCGCCCTTCCGAGGCCGAGGGGCTGCAGCCACGCCTGCCCCCGGGACTGCCACCCTGCCCCCTGCGAGCCCTGCGCCCAGCTCGTCAGGCTCCCCTGCCAATGCGGCATCAACCTTCTTTACCTGCGCTGCGCCCAGCTCACCTCCGCCACCCTCGAGCAGAGGAACCGTCTCCTCCTCTGTGGAAATCAGTGCCCGCAAAATTACCCCTGCGGCCATCGATGTGTCGACAATTGCCACGTGGGACCCTGCCAAAGGGCCGAATCCTGCAGCAAAAAGGTGAAGATATTCTGCAAGTGCAGGAGAATGAAGAAGGACTTCTCGTGTGCTTTGGTTAGAATGGGCAAGGCTCTCGTCGATTGCGATGATATTTGCCACAAGAAGAAAGAGGAACTGGATAAGGTGCGAAAGATCGAAGAGGAGAGGAAAAGGAGGGAGGAGGAATACAGAAATCAAAGGGAAATCGAGATGTTCGAGAAGAAATTTAAGCCTAAAAGGAGGGGAAAGGATCGTTATCAGAATAAAGAGCAGCCGAGCGATAACAAATGCTACTACAAGTGGTTTTGGATAATGGCTCTCTTTATTACCGGAGTATCCGTAGTGGTGATGCTGACGTTTCAATAA
- Protein Sequence
- MRKFKRAQVQNQESIKKHLEANAIESSSSEDDNEEVLERAVKTILTNYQCEGGNGNKTLSYLTETFQSGGIVCLICISTVKKIDPIWSCSKCYTFLHLPCIQHWVRDSLSYKHEKGIVPSWGCPKCRTEYQKDEIPQRYLCFCGKVENPAYQPWSVPHSCGNMCEKFLKPKCGHKCTLLCHPGACPPCPKMVPVACHCGKEAPCPRRCNAKEWSCGKPCGKKYASCEHRCADKCHPGACPPCSEAVVSPCNCGGKSELRMCKESLWSCDKICGRSFSCNVHVCESVCHKPGDCEVCPLERNRSCPCGKKKYSISCNRQQAPTCGDTCGKLLDCGAHYCNMRCHPEHCGQCLEVVTKTCRCGSFSKELPCVKDFHCNKKCPQLRLCGAHLCNRKCCDCLSTNSFNPCEKVCYNTLNCRKHKCPATCHRGPCYPCPRVDVVQCRCGSNKISLPCGSTKKVPNCNKKCRVPPVCHHPKRESHRCHQGACPPCRRVCGSVHRKCGHACPAVCHTKVRTRVEQGSNQVGQWLGPRERWELKSFPCPPCEVSVMVTCLGGHETLPYPCHKAVSASCLRECGQRLSCANHRCELPCHELEPGADRASCASCERPCALPRPRGCSHACPRDCHPAPCEPCAQLVRLPCQCGINLLYLRCAQLTSATLEQRNRLLLCGNQCPQNYPCGHRCVDNCHVGPCQRAESCSKKVKIFCKCRRMKKDFSCALVRMGKALVDCDDICHKKKEELDKVRKIEEERKRREEEYRNQREIEMFEKKFKPKRRGKDRYQNKEQPSDNKCYYKWFWIMALFITGVSVVVMLTFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -