Kgib010044.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- -
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000006.1:18494906-18499051[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.029 5.5 8.5 0.2 6 21 12 27 6 28 0.86 2 14 0.94 1.8e+02 3.7 0.0 2 20 34 52 33 53 0.92 3 14 6.4 1.2e+03 1.1 0.6 1 11 235 245 235 255 0.71 4 14 0.12 23 6.5 0.7 1 20 375 394 375 396 0.94 5 14 0.00013 0.025 15.9 0.3 2 23 401 422 400 422 0.97 6 14 0.0052 0.98 10.9 1.5 1 23 433 455 433 455 0.95 7 14 0.08 15 7.1 0.1 1 23 474 495 474 495 0.90 8 14 0.0028 0.53 11.7 0.0 2 23 501 522 500 522 0.95 9 14 3.7e-05 0.007 17.6 4.8 1 23 583 605 583 605 0.99 10 14 4.5e-06 0.00084 20.5 5.0 1 23 611 633 611 633 0.98 11 14 9.7e-05 0.018 16.3 4.6 1 23 639 661 639 661 0.98 12 14 1.1e-06 0.00021 22.4 0.8 1 23 667 689 667 689 0.98 13 14 7e-05 0.013 16.7 0.2 1 23 693 715 693 715 0.99 14 14 0.00026 0.05 14.9 0.1 1 23 723 745 723 745 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCTATCAATTTAATATGTCCTATGTGTTGCGGAGAGACTTTTAACAATTTGGAGTCTCTTAAGTATCATCTACTCAGTATGACTGACAATCTTTATTGCCCTGGCTGTTCTTTAAGGACTTACTCAGTGGCTGCATTGATTCAACATTTAGATTGTTGTGGGAAAGAAATAGGACAAGAGGAACTACCAAAAGATTCAGAATTAAATTCTAATGAATTAGATGTCGAAGATAATAATAATGATGAGCCAGACATACTAATGGATGAAAACCATGATCCTATTAATGACAGTTTTTTAGCAACTGTAAATGAAGATGGTATAATGATTGTTGGTGAGGGTAGAACTATTCAAGTTGATGAAAATGGTGATATTCAGGTTTTAGAAAAAACAAATTCCATAAATGAGGAAGAATCTGTGTCTCTTATTGATTGCGAAAAAAATATAGCTAATACAGAGGAAGAAATTCAGATCAAAGATATTTCTAATTCATTACAACGTAATAATTCAATTAGTTCTTCAAAAAAAGAAGGTTCTATGACAAGCATAGTTTCTAATTCTGAATTATTAAATGAAAATGAAACCACATTAATTTGTATGACACAAGTTGAGGATATACAATTGGATGATTGTGATATTCTCAAAATTAAAAAAAAATGTGATAACGCATTAAAAAAGGAACAGGAAACAGGCATAATGTACAGCTGCAGTACTTGTAGCGTGAATTTCAATTCTGTATTAGAACACATAAAGAAATATCATGATGGACAAGAAGTTGTATTAGAGATGGCTGAACAGCAGATAGATGAAATACAATCAACAACATCTGAAACAATAATACCATCACCTGTTACACCAATACAATTGACAAATAATATTGTTCAAGCAACTGCTATTCCATCTAAACAAAGACAGTTGATGAATACACTAAGAACTGAAGAGTGTATTGACAGCGATGGTAGATTATATACAAGAAAAGTTGTTCAAATTGAAAGATTTTGGGATCGAACTCCTGTCACCTTGTCTTCAACAAAAGCTCCAATGATTGAAAAATTTTTTTCCAATGTTGAAGGTGTTAAGGTTCGAGATAAAAGTGTGACAGTTGCTCCAACAAGAATGTACAGATGTAATCAATGCTTAGAGCAATTTGCTAAGATGGGCGATTTTCGCGTTCATGTGTGTCTTCAAGGAAACAAGCGATGTGACCAATGCGATCAAACATTTGCAACTGGGAAAGCGTTGCAGATTCACTTGAAAGTTCATGAAAATAGTGATTTTCCGTCGCAGAAGATTTTTTTATGTCCAGTTTGCGGGACGGAATTCCTAACGCACAAAAGTTTACGATTACATTCAAGAATGCATGCACCGGTTAGAGCGCGACATGTCGAAGCACCGGAAGGAACCGAAGAGGAATCTTTTGTCTGCAGCGAATGTGGAACGACCCTCTCGGAGTCTTATAGGGCTGCGCATATGGCCCTTCATGCGGGCGACACCATCACCTGCGCCGTTTGCAACCGGAAGTTCGACTCAGCAGAGAGCCTCTCGATGCACGCGGCGGTTCACACGGAGTTAAGCGTCGGTTCCCCAGGGACAGGATGTAGTGCCGGTCCCGGACAGGTCGGACTTGAACTCGGTCTCGTCGCCACCCCAAGCGTCGAGCAGAGCCTTTACGTCAGTAACGTTGCAACTTCCGCCGTCAACCCACCAATGGTCGAGAACATCGACACCCAGAGCAACAAGCCATATCAGTGTCAGCACTGCGGACGAAGGTTCACGAGGCCCCACGAGAAAGTCAAGCATGAAAGAATACACACCGGAGAGAAGCCCCACTCATGTGAGGTCTGCGGCAAGAAGTTTCGAGTCTCGTACTGCCTCACCCTCCACATGCGGACTCATACGGGAGTTCGTCCTTACGAGTGTCAGCACTGCGGCAAGCGCTTCAAGGCCTCCTCCGTTTACAACCACCACCTGCTAACGCACGGAGACGAGCGGGCCTATACCTGCCCCTACTGCCCTAAGACCTTCAAGACTAGGGTGCAGCTCGCCGGACACAAGAACAGCCACACGAAGCCCTTCCGGTGCACCGAGTGTTCGCGGCCGTTCGCTTCGCTTTACGCCGCCCGAGCCCACATACAAACTCACAAGAAAGATAACAATCTCAAATTCAGTTGTAACGTTTGTGGTGCTTCGTATGGGCGGGCTTTCGCTCTCAAGGACCACGTGAAGCAGCACGAGAAGGAGAACGCGACGGTGCCACCAGAGCCCGCGCGCGAGGTCGAAGTTCACGAAGTCGACAGCTTCCTCATGCACGAGGACGAGGAGGATCCCGAGGATGAGGAGCATACTGTACGCTCCTCACCTCCCATCCATCCCCCTTAG
- Protein Sequence
- MGSINLICPMCCGETFNNLESLKYHLLSMTDNLYCPGCSLRTYSVAALIQHLDCCGKEIGQEELPKDSELNSNELDVEDNNNDEPDILMDENHDPINDSFLATVNEDGIMIVGEGRTIQVDENGDIQVLEKTNSINEEESVSLIDCEKNIANTEEEIQIKDISNSLQRNNSISSSKKEGSMTSIVSNSELLNENETTLICMTQVEDIQLDDCDILKIKKKCDNALKKEQETGIMYSCSTCSVNFNSVLEHIKKYHDGQEVVLEMAEQQIDEIQSTTSETIIPSPVTPIQLTNNIVQATAIPSKQRQLMNTLRTEECIDSDGRLYTRKVVQIERFWDRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKMGDFRVHVCLQGNKRCDQCDQTFATGKALQIHLKVHENSDFPSQKIFLCPVCGTEFLTHKSLRLHSRMHAPVRARHVEAPEGTEEESFVCSECGTTLSESYRAAHMALHAGDTITCAVCNRKFDSAESLSMHAAVHTELSVGSPGTGCSAGPGQVGLELGLVATPSVEQSLYVSNVATSAVNPPMVENIDTQSNKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNVCGASYGRAFALKDHVKQHEKENATVPPEPAREVEVHEVDSFLMHEDEEDPEDEEHTVRSSPPIHPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304593;
- 90% Identity
- -
- 80% Identity
- -