Basic Information

Insect: Kradibia gibbosae
Gene Symbol: -
Assembly: GCA_018907135.1
Location: JACCHX010000004.1:14613009-14618355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.058 14.7 4.1 1 23 222 244 222 244 0.97

2 11 9.5e-06 0.0018 19.5 1.5 1 23 250 272 250 272 0.98

3 11 0.00071 0.14 13.6 3.8 1 23 278 301 278 301 0.95

4 11 0.0094 1.8 10.0 5.2 1 21 307 327 307 329 0.95

5 11 9.5e-05 0.018 16.3 1.9 1 23 335 357 335 357 0.99

6 11 6.2e-06 0.0012 20.1 0.3 1 23 363 385 363 385 0.98

7 11 0.00024 0.046 15.0 1.4 1 23 393 416 393 416 0.97

8 11 2.6e-05 0.0049 18.1 2.6 2 23 423 444 422 444 0.97

9 11 9.5e-05 0.018 16.3 0.3 1 23 450 472 450 472 0.99

10 11 0.0021 0.41 12.1 7.1 1 19 478 496 478 501 0.91

11 11 1.1e-07 2e-05 25.6 1.2 1 23 515 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.058	14.7	4.1	1	23	222	244	222	244	0.97
2	11	9.5e-06	0.0018	19.5	1.5	1	23	250	272	250	272	0.98
3	11	0.00071	0.14	13.6	3.8	1	23	278	301	278	301	0.95
4	11	0.0094	1.8	10.0	5.2	1	21	307	327	307	329	0.95
5	11	9.5e-05	0.018	16.3	1.9	1	23	335	357	335	357	0.99
6	11	6.2e-06	0.0012	20.1	0.3	1	23	363	385	363	385	0.98
7	11	0.00024	0.046	15.0	1.4	1	23	393	416	393	416	0.97
8	11	2.6e-05	0.0049	18.1	2.6	2	23	423	444	422	444	0.97
9	11	9.5e-05	0.018	16.3	0.3	1	23	450	472	450	472	0.99
10	11	0.0021	0.41	12.1	7.1	1	19	478	496	478	501	0.91
11	11	1.1e-07	2e-05	25.6	1.2	1	23	515	537	515	537	0.98

Sequence Information

Coding Sequence: ATGTCAAACGTGACAACTATAAAATTGGAGGGGAATCAGGAGTCAGTGACAGAAATACAAACTTATCTTGAATCTTTCAACAAAGAAATTGAAGGTGGTCAAGGGGAACAGTTACAGCATGTGCAATTACAACAAGTAGAAGGACTTACAGGAGAAGATGGGGGGACATATTTTGTTGATCAAACAGGCCAGTATTATTATCAAGCTAGTGGAGATGACACACCTGTTTTAACTCAGGTTCAAATTCAAGAAGTGAGTGAAGGTGATGGTCAAATTGAAGAAGCTACTCATGAAAATCAATATCAAGAAATTGAAGAACTTGAGCAAGTTGATACAGAAAACCATGCACAAACGGAAAGTATTGGTAATCAGATGGTCCTTAATTCAGGGGAAGCTTATCAGACAGTTACGATTGTACCATCAGATTCAAATCCTGGAGAAGTGAGTTATGTTTTAATAGTACAACAACCTGAAGTTGAAAGCAAGGTTGAGAATAAAACAGAAAACGAGAATGGTGAAGGTGAAGATGGTGAACAGGATCTAACAGTGTATGACTTTGAGGACAATGAGGACAATAATGCTGTTGTTGAATCTGAAACTGAAGATGACAAGACTAAAATCATCAAATTTATTCCCAAGAAATCGCAAACTGTCACCCAAGCGCACATGTGTAACTATTGCAATTATACAAGTCCCAAGCGTTATCTCTTATCTCGACACATGAAATCACATTCAGAGGAAAGACCTCATAAGTGTAGTGTTTGTGAGAGAGGCTTCAAAACTTTAGCTTCGCTGCAGAATCATGTCAACACCCATACGGGAACTAAACCCCATCACTGTAAATTTTGTGACAGTGCATTCACTACTTCAGGTGAGCTTGTTCGACATGTTCGATATAGACACACTCATGAAAAACCACATAAGTGCCATGAGTGTGACTATGCATCTGTTGAATTGTCAAAGCTCAAAAGACATATACGGTGTCACACTGGAGAACGGCCATATCAATGTCCACATTGTACATACGCAAGTCCTGACACATTTAAGTTAAAACGTCATTTGCGTATTCATACTGGTGAAAAGCCATATGAATGTGATATCTGTAATGCAAGATTCACTCAATCTAATAGTTTAAAGGCCCATAAACTTGTCCATAATGTGGGGGACAAGCCAGTGTTTCAATGTGAGCTTTGCCCAACAACGTGCGGTAGAAAAACAGATCTAAGGATTCATGTACAAAAACTACATACTTCTGATAAGCCATTAAAATGTAAACGATGTGGTAAAACATTCCCTGATAGGTACAGTTACAAATTGCACAGTAAAACACACGAAGGCGAAAAATGTTACAAGTGTGATCTATGCCCTTACGCCTCGATATCGGCGCGTCATTTAGAAAGCCACATGCTCATTCACACGGATCAAAAGCCATATCAGTGTGATCACTGTTACCAGTCCTTCCGGCAAAAGCAACTCCTAAAGAGACACTGCAATCTTTACCACAATCCCTCTTACGTTCCGCCGGCGCCACAAGAAAAGACTCACCAATGCCCAGAATGTGAAAGGCCGTTTAGGCACAAAGGAAATCTTATTCGTCACATGGCTGTTCACGATCCCGAATCATCATTGCAAGAAAAGCAACAGGCCCTTAAAATAGGAAGGCAAAAGAAAATTCAGATCATTGATGGACAGAGAGTAGAAATAATGACAGGTGATATAGCTTCTAAACTTAAAGGTTATGATGACGATGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGACATGATGGCAGTAGAAGGAAGCGATGGCCAGCAATACGTGGTTTTAGAAGTCATCCAATTACCTGACAACCAATCATCGGAACAAATGGCAGTGGTAGCAAGTGAAGATGGAGATCTCGTAATACAGGATCCACTTAGTCAGGAAAGTGGGATCGTTACTGAAGCTGGAGATGAATTAATTGAGCAAGAAGATGCCGATGAAATTGTAGGAACTTTGAAACTCGAAGAAGTACAGATTAATAAGAATTCACATGCAAATGACTCTAAACTACAAAAAGACATGGAAACATGTTTTGGATTTGATGAAGAAGAAGATGAAGATGAAGAAGAAAGTGGAGATATACCAATACTACAGGGTATTTCGTAA
Protein Sequence: MSNVTTIKLEGNQESVTEIQTYLESFNKEIEGGQGEQLQHVQLQQVEGLTGEDGGTYFVDQTGQYYYQASGDDTPVLTQVQIQEVSEGDGQIEEATHENQYQEIEELEQVDTENHAQTESIGNQMVLNSGEAYQTVTIVPSDSNPGEVSYVLIVQQPEVESKVENKTENENGEGEDGEQDLTVYDFEDNEDNNAVVESETEDDKTKIIKFIPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICNARFTQSNSLKAHKLVHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCYQSFRQKQLLKRHCNLYHNPSYVPPAPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEIMTGDIASKLKGYDDDEEEEEEEEEEEEEDMMAVEGSDGQQYVVLEVIQLPDNQSSEQMAVVASEDGDLVIQDPLSQESGIVTEAGDELIEQEDADEIVGTLKLEEVQINKNSHANDSKLQKDMETCFGFDEEEDEDEEESGDIPILQGIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00691377;
90% Identity: iTF_01468260;
80% Identity: -