Kgib002399.1
Basic Information
- Insect
- Kradibia gibbosae
- Gene Symbol
- bab2
- Assembly
- GCA_018907135.1
- Location
- JACCHX010000003.1:5168813-5171185[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-12 3.2e-08 34.0 0.1 1 38 310 348 310 352 0.91
Sequence Information
- Coding Sequence
- ATGAGTACCTCGGCGCAGCAGTACTGCTTGCGATGGAACAATCATAGTTCCAATTTTGTAACAGTATTCGAGCAGCTGTTGAAGTCCGAAGCTTTCACCGATGTCACTGTTTCGGTCCACGATGGTGCCTCCATCAAGTGCCATAAAATGGTCCTCGCCGCATGCTCCTCCTATTTCCAAGATCTTTTTATCAAGAACCCTTGCGAATATCCCATCATCATTCTCAGCGATGTCAAGTATTGCGAAATAAAGGCAATTCTTGATTATATGTACAAAGGGGAAGTCAATGTAGCGCAAGATCAACTTGCTGGCCTGCTAAAGGTTGCAGCCTTTTTAAAGGTAAAAGGTCTCGTAGAGGATAGCGAATCGAATTACAAACGAGAGGCAGAGCCTTCGATGTCACCTTCTCCAGCCATAACCACGAGTACTATGAGCAACGTGGCTCACAGCAGTGGATACGTATCTCCTCCTCATATTCCATCTTCTACGTTTATTCCATACGGCAAATCCCCTGTTGAAAGAAACCACAATCACATGCCGTTATGGGCTGCTTTCTCCGGGCTTCCGATGCCTCAACATCCAATATCCGGTCACCAGCCTCCACCTCGTAGCCAGCACTCCATTCTTGGTAGCTCGTACGAAAATTCCTCTGAGACCTCTCCTTTAAGTAGGAAAAAATTCTCTAGCTTAATGGCGAACCGCGACACGCCCATTTTAAGAAACGTTCTTGGTCAAGGACAAGCCGATAGTTCTCAAGGAATAGGCGAATCGAAAAGCCTCGAAAAGAGCGCGCGCGCGCGCGAGAGAGAGAGAGAACAGGAGCTTCGCGAGTGGGCGATAAGGGGAGCCCGACTAACGGCCGGGGCACGCGCCTCGATCATTGTTCCAGGTGGGCCGAAGCCCGAGTGGAAGCGGTACAAGCAGTACACCCGGGAGCACATAATGGACGCGATGAGCGCCGTGCGCAACAAGGAGATGAGCGCGCTGCAGGCCGCCAGGAAGTACGGGGTGCCCTCGCGCACCCTCTACGACAAGCTGAAGAAGGCCGGGATCCTGCCCTCCCGGGGGGCCGCCGTCCAGAGGCGCGAGTCCCCCCACTGCGGGAGCGCGCGCTTCCCCTACTCGAGCAGCATCAACGGCAGCGTGTACGGGAGCGGGGCCGGGGCGGGCGCGGCCCTCTCCGAGAGCGAGAGCGAGACCAACGGGCCCGTGGGCTGCGCGAGCGAGGCCTCCTACGCCTCGGCCCTGGCCATGGACATGTCCACGCGGAGCCCGAGTCCGGGCCTGAACGCCTCGGGGGCCCCTGGCCCCGAGCTCGACGACCAGGTCGAGGACCTCTCCCTCGGGCGCCCGGCTCCTCCTCCTCCGGCCCACGAGGACGAGAACGCCAACGAGTCCGAGGGCTCGAACCGGGCCTGA
- Protein Sequence
- MSTSAQQYCLRWNNHSSNFVTVFEQLLKSEAFTDVTVSVHDGASIKCHKMVLAACSSYFQDLFIKNPCEYPIIILSDVKYCEIKAILDYMYKGEVNVAQDQLAGLLKVAAFLKVKGLVEDSESNYKREAEPSMSPSPAITTSTMSNVAHSSGYVSPPHIPSSTFIPYGKSPVERNHNHMPLWAAFSGLPMPQHPISGHQPPPRSQHSILGSSYENSSETSPLSRKKFSSLMANRDTPILRNVLGQGQADSSQGIGESKSLEKSARAREREREQELREWAIRGARLTAGARASIIVPGGPKPEWKRYKQYTREHIMDAMSAVRNKEMSALQAARKYGVPSRTLYDKLKKAGILPSRGAAVQRRESPHCGSARFPYSSSINGSVYGSGAGAGAALSESESETNGPVGCASEASYASALAMDMSTRSPSPGLNASGAPGPELDDQVEDLSLGRPAPPPPAHEDENANESEGSNRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00845343;
- 90% Identity
- iTF_00845343;
- 80% Identity
- iTF_00845343;