Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000033.1:1431852-1439040[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.023 1.9 10.0 2.4 2 23 65 86 64 86 0.98

2 32 0.028 2.3 9.7 1.3 1 23 92 115 92 115 0.98

3 32 0.00083 0.069 14.5 3.4 2 23 129 150 128 150 0.97

4 32 0.1 8.7 7.9 4.6 1 23 156 178 156 178 0.99

5 32 0.19 16 7.1 2.8 1 23 183 206 183 206 0.96

6 32 0.98 81 4.9 0.9 1 21 215 235 215 236 0.93

7 32 0.95 79 4.9 4.2 2 23 244 265 243 265 0.96

8 32 0.03 2.5 9.6 3.7 1 23 303 326 303 326 0.98

9 32 0.45 38 5.9 2.3 1 20 334 353 334 355 0.94

10 32 9.2 7.7e+02 1.8 0.5 1 21 412 432 412 435 0.79

11 32 2.5 2.1e+02 3.6 0.0 1 20 436 455 436 457 0.91

12 32 0.22 18 6.9 5.3 1 23 601 623 601 624 0.96

13 32 1.8 1.5e+02 4.0 0.2 1 20 632 651 632 653 0.90

14 32 2.9 2.4e+02 3.4 6.0 2 23 661 682 660 682 0.95

15 32 0.011 0.89 11.0 5.3 2 23 686 708 685 708 0.96

16 32 1.8 1.5e+02 4.1 0.3 2 23 714 735 713 735 0.95

17 32 0.0048 0.4 12.1 0.5 1 23 741 764 741 764 0.97

18 32 0.004 0.33 12.4 0.3 1 23 940 963 940 963 0.96

19 32 0.063 5.2 8.6 1.4 1 23 969 991 969 991 0.97

20 32 0.019 1.6 10.3 1.8 1 23 997 1020 997 1020 0.98

21 32 0.051 4.2 8.9 0.3 1 22 1028 1049 1028 1049 0.95

22 32 6.9 5.7e+02 2.2 3.3 2 23 1057 1078 1056 1078 0.95

23 32 2.8 2.4e+02 3.4 0.6 1 23 1129 1152 1129 1152 0.93

24 32 0.0053 0.44 12.0 0.3 3 21 1155 1173 1155 1174 0.96

25 32 0.011 0.87 11.1 1.4 1 23 1302 1325 1302 1325 0.98

26 32 2.5 2.1e+02 3.6 0.5 1 20 1333 1352 1333 1354 0.91

27 32 0.00063 0.052 14.9 0.5 3 23 1388 1409 1386 1409 0.92

28 32 0.0043 0.36 12.3 3.9 1 23 1442 1465 1442 1465 0.97

29 32 0.87 73 5.0 1.6 2 23 1493 1515 1492 1515 0.96

30 32 0.001 0.086 14.2 0.8 1 23 1519 1541 1519 1541 0.98

31 32 6.8 5.6e+02 2.2 0.5 2 23 1659 1680 1658 1680 0.95

32 32 0.0016 0.13 13.7 3.0 1 23 1686 1709 1686 1709 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.023	1.9	10.0	2.4	2	23	65	86	64	86	0.98
2	32	0.028	2.3	9.7	1.3	1	23	92	115	92	115	0.98
3	32	0.00083	0.069	14.5	3.4	2	23	129	150	128	150	0.97
4	32	0.1	8.7	7.9	4.6	1	23	156	178	156	178	0.99
5	32	0.19	16	7.1	2.8	1	23	183	206	183	206	0.96
6	32	0.98	81	4.9	0.9	1	21	215	235	215	236	0.93
7	32	0.95	79	4.9	4.2	2	23	244	265	243	265	0.96
8	32	0.03	2.5	9.6	3.7	1	23	303	326	303	326	0.98
9	32	0.45	38	5.9	2.3	1	20	334	353	334	355	0.94
10	32	9.2	7.7e+02	1.8	0.5	1	21	412	432	412	435	0.79
11	32	2.5	2.1e+02	3.6	0.0	1	20	436	455	436	457	0.91
12	32	0.22	18	6.9	5.3	1	23	601	623	601	624	0.96
13	32	1.8	1.5e+02	4.0	0.2	1	20	632	651	632	653	0.90
14	32	2.9	2.4e+02	3.4	6.0	2	23	661	682	660	682	0.95
15	32	0.011	0.89	11.0	5.3	2	23	686	708	685	708	0.96
16	32	1.8	1.5e+02	4.1	0.3	2	23	714	735	713	735	0.95
17	32	0.0048	0.4	12.1	0.5	1	23	741	764	741	764	0.97
18	32	0.004	0.33	12.4	0.3	1	23	940	963	940	963	0.96
19	32	0.063	5.2	8.6	1.4	1	23	969	991	969	991	0.97
20	32	0.019	1.6	10.3	1.8	1	23	997	1020	997	1020	0.98
21	32	0.051	4.2	8.9	0.3	1	22	1028	1049	1028	1049	0.95
22	32	6.9	5.7e+02	2.2	3.3	2	23	1057	1078	1056	1078	0.95
23	32	2.8	2.4e+02	3.4	0.6	1	23	1129	1152	1129	1152	0.93
24	32	0.0053	0.44	12.0	0.3	3	21	1155	1173	1155	1174	0.96
25	32	0.011	0.87	11.1	1.4	1	23	1302	1325	1302	1325	0.98
26	32	2.5	2.1e+02	3.6	0.5	1	20	1333	1352	1333	1354	0.91
27	32	0.00063	0.052	14.9	0.5	3	23	1388	1409	1386	1409	0.92
28	32	0.0043	0.36	12.3	3.9	1	23	1442	1465	1442	1465	0.97
29	32	0.87	73	5.0	1.6	2	23	1493	1515	1492	1515	0.96
30	32	0.001	0.086	14.2	0.8	1	23	1519	1541	1519	1541	0.98
31	32	6.8	5.6e+02	2.2	0.5	2	23	1659	1680	1658	1680	0.95
32	32	0.0016	0.13	13.7	3.0	1	23	1686	1709	1686	1709	0.98

Sequence Information

Coding Sequence: ATGGAGATGAAACAGGAACCGGAAGACGAGGTCCTCAACAATGATGAGGATCCGTTTGAGAGTGTTTGGGTGAAAGCGGAGACGGTGGTCGTCACACCAGACTATGATGTTGATGGTGATGCCACTACCAACACTGAATCTGACAAAAAACCACTTCAGCCAACCAAAAAAGTATACAAGCAAAAACTAAAAAAGTGTACTATATGCGATTTCTCAACAATACACGGAAACAGTTTGAAGTACCACATGTTGACCCACGGTAGCGATCGCCCGTATAAATGCGAATATTGCGACTTCACTTCCAAATACCCTCCAATCCTGAAACGACACAAAAACACGCTACACGCAGAACTAGTCCTGAGAAACACAGAGCCAGAGATATTAAAATGCAAGAAATGTAACTACACAACCACTATAAAACAAAACTTGAAATCGCATATACGGAAACACAAGAAAGATAAACAGTTCAAATGTTCTGAATGCAATTTTGAGACAGCGTACAGGCATAACTATGTGAAACACAGCAAAACGCATCAACAAGATATCTACAGGTGCGACAAATGTTCGTTTGAGACGAAATACTACGGACACATAACCAGACATATGGAGCAGATACACAACGAAGTAATGCAAGAATCAAAGCATATTTGCGAGTTCTGTCAAACGACAAGCAAGGAAAGATGGAAGCTAAAAGTGCACCAAGAAAGAAGCATAATGAAATACCAGTTGCGATGTccgtattgcaattttgagTCCATATACAAATGCCAAATGAGAAAGCATAAAAAGTTACACGATGATGATAACGCTGACGGTACTTTTAATTTCACTAAAGCGCCCAACACTACTCCGATTACTCAAGAAGAAATAAACAAGTTCATTCAAACAGAACCAAGCGACGCTTTATATAAATGTGATAAATGTTCCTTCGAAACTAAGTTCAAAGGTCACATGACCAGACATCTAGAAACTATTCACAATGAAATCGTAGAAGCTGGCTTCAGATGCGAAATCTGCTGCGCGACTTTCACAGAGAAATATAAATTAAGACAACACGTCACTAAAAGTAACGTAAAATACCATATTAAGTGCACGGAATGCAATTTCGAAACATTATACAAATGTGAAATAAGACGGCACAAGAAAATCGAACATTTTGACGATCGTGACAGATATACATATTCTAGACATCCAGACATGTTACAGAACGAACAAGAAACGAACGTAGACGGTTTTCAATGCGAGAAATGTCCTTTTAAAACGTTATACGAAACAGAATTCACTAAACACGCCATAGAGGCGCATTTTCTATGCAAATTATGCAATAATTACTTCCCAGATAAGTGGGGCTTGGACATGCACATTATTGGAGGCAAAGCGGACGATGTCATAAAATGTACTTACTGCGATTTTGGTTCGCTATACAAATGCGAAACTAGAAACCACATCAACACACATTTCACTAACCTCAGCGAACTCCCAAAAGAACGTGCTCCCCAAAACACTGATATCGCCCCTCCGAACACGACGGAACTGAGAAATCTGTACAACTACATGTACGAATCGGATCTGCAGAAAACAATGACGGAATTGCAACAAAAGTTGCCAACTCCTTACTACAGACAGTTCGATGGTCCTAGTACGGCTCCAATGTATCAACCTCCCCCGGAAATACCGCCCCCACCGGAAACAAATCCTAACCAACTAGGCCACAGCAAATTCGGCTCATATCTCATCGACCAAAACTGCATCGACTGGCGCTCCATACAAGTCATCGAAACGAATGACAGTGTCAACCGCTACAAATGCCCGCTGTGCGATTACCCGTCGAAATTCAAAGCTTGCGTACAAAGACATTTCCAAAGACACCACACCAACACAGAAAATCGACCATATAAGTGCGTGAACTGCAACTTCGCAACCAAAACTAAAGACGCCATCGCATTGCACAGCAAGCGAAACCCGCCAGGCCCGCTCTTACACTGCCAGATCTGCGATTATACTACCAATTACAAATGCGCGTTCAATTCCCACACGAAATTTCATTACGGCAACAAATGCAAAGTCTGCAAACAGCAATACAAGCATAAACACGAATTAATCCGCCATGTTGCGACCAAGCATCTGGGAAAAGGGATAAAATGCCACTTATGTGACTTCGTAGCGCTGAGGAAGGACAGTATGGCGAGCCATATTTTGATTCACACCGGGGTGAAGCCGTTTCCTTGTCGTCTCTGTGACTATGCGACTATCAGAAGGACGTTATTAGATGTGCATATGAGGAAGAAACATAATCTTGTTGGACGCGTAGGGGTCACTATGATTGATAAAAGCAAGATTGAATCTCTGAAAGTCCCTTGTCCtgaGGAACTAAAGAAAAAGAGCGAAGTGAAGATCGATCAAATCACCACAAATAATTCTAACAATAATTCCGAGATCAACTTAATCGGACCAGAGGACTTAATTGTTCAAGATGACTTTTATACGGGCCGAGATGACAATAGCGCGGGCCGAAATGACGCTGAAGTGGGTCCAAATGATAATGATGCAAACGTAAATGACGTTATAGATGTAGATGATGATGTTatggcagatgatgatgatccaatcaatgatgatgattataccCCTGACTATCAAGACGAACCCTGTCCTGTTGATGTTTTAAGCGAAGATGTCGATGTCAAACCAAACATTAGCATAATcaaacttgaaaataaaaaagacgTGCCAAAAACAACACACGCGTTAACAGAATTCTTGACGGTAGAGATGGTTAGCGAAAAAGATTTAGTAGAAGAAGTAGAAAAAGAAATGTATGCGTGCGATCAGTGTGATTACAGTTCTTCAAGCATGAAGCAACTCGCAGCGCATATAAGCAGGAAACATGACGCGAACAAGAAATATAAATGCCTGTTATGCCCTTTTAGAACTCCAAACAAAAACCGCCTTAAACGACACAAAGAAATCCATAAAAACAGATCTGCGTATAAATGTAATTTGTGTTCgttcaaatcaaaatcaaagtCATTCGTTGTGAGACACTTGAGGGTAGTTCACAATCAGATCATAAAAACCGAATACTCGTGCGCGTATTGTAATACTTTTACATCAAACGAACTCCAACTTGAAGCACATCTAAAAAGAAATCGCACTGAAAAGGCCGTCGTATGTAACATGTgcaattttgaaacaatttattcATGTCAAATGAAAAAACATAAATTCAGTCATGTACGCGAAGAACGAGACGAGAAAGACGAAACATTGACTAAACCCAAAAACACGATGTATTACACAAAAGTAAAACTAAACGATAGATCGAATATTAAAGCGGAAAGTGATAACGCAAGTTCGGATAGTTCAGATGATGATGAGAACACTTTTAAATGTGAAAGATGTCCTTTCGAATCCATCAGTGAGAAAAGCATGCTAAAGCATTTTATAAGAGCTCACAACGGGTGCAAATACTGTCGGCGCGTTTTCAGCACAGAAGTTGAATTCCAAGAACACATAAAAAATAGCAAATCTACCGACACGGTCCGATGTTTTTTCTGCGACTTCGACTCCGATTACAAATGCGAAACTTGCAAACATATGTGCACACATTTTATTGGCTTCAACGGCGTCGAAGAGAACGATAACTTCTTTTTGGAAGACAAAATGGCGAATTTAATGAATTTAGTAGAAAATCAGCTACAAACTGACAATAAAAACAAGATAGAAAACAACGAAGCAAAATACTTTAGGAATTTCGATGGGAATACAGAAAATGTTGACGAAGATGCTAACAATCAAATAGGATTGCAAGTTGAAGAGAATAGATACGGAAACTTCTTGGTAAACCCGACCCATATTGACAACAGATCGTTGAAAGTGGAAAAGCCAGCACATGCAGACGCATACCAATGCCCTGCTTGTGAATTCTCAACGAAATACCGGACGTCGATGCAAAGACATATACAAAGAAACCACACAAAGAATCATTACCGCCCTTTCAGATGCATAGACTGCGGTTTTTCAGCTAAAAGCAAGGACTCGATCCGAAAACATAACCAACGAAAGATATCGTTCAAGAAACTGAAGTGTTCTCAGTGCAGTTTCACGGCTCACGTCAAATGTGCTTTAGCTGTTCACCAAAAGAGACACTTCAAGTCGAATTGCAAAGTTTGTGGCAAAGTGTTTAGCTACAAACATCCGCTCATAGCGCATTTTGCTGTGACGCATCTGATGATCGGCTTGAAATGCCAGTACTGCGATTTCTACGCGTCCTTGAAAGAGACCATAATCGACCACGAGTCTACTCACACCGGTGTCAAAGCACATAGATGTAGCATTTGTGATTACTCTGTGAATCGCAAAAGATTGCTTCAGATGCATTTTCGAAGGTATCACCTTCAAGAGCGAAGCCCGAAACCGATTAGGAAGTTCAAAGTCGAAGTGAAACTCGAAGATTCGAGCACCGGCGAAGTGCTGTCGTGTGATCTGTGCAAGTATACGAACACAAGCAAGAACAAACTAGCGATGCACATAAAACGGAAACACTCAATGGTGTTTATGTGCGAGAAATGTCCTTACACTACCCCTTATAAGGGAGCTCTTAAAACCCACAGTCGAACGCATACGAAGTATTCTCTTTACAAATGCATAAAATGTCCATACCAAACTACATTTAAAGGACGAATACTCAGTCATCTAGCAAAGGTACACAAGTTGGGAACTGGTGGCAAAGAAGCCAAGCTAATTTGTGAATTTTGCAAAGTCAAACACAGGTCCACCTACATGCTCCAAGTTCACCAAGAACAAAATCGTTATGAGAGCCAAACCAAATGCAATGCATGCGATTTTCTGACTATGTACAAATGCGAAATGGAAAAACACGAAATTAGTCATACGGATTTTAAGGCAGAACCGATTTGCAAGCAGAACGAAGAGAAGTTTTACACAGAAGAGGTCATAAGAGAGAACGTTTTGAAATGTCGGTTTTGCGACTTTATCGGTTCCAAACGGGGGACGGTCTCGAGGCACGAAGCCACGCACGCGGGGGAAAAGCCTTATCAATGTAACATTTGCGGATTTTGCTCCAAAACTAATATGCTGCTCATGCAACATTGGAAGAAAAATCATGGTTATGGGATCAAAAAGTAG
Protein Sequence: MEMKQEPEDEVLNNDEDPFESVWVKAETVVVTPDYDVDGDATTNTESDKKPLQPTKKVYKQKLKKCTICDFSTIHGNSLKYHMLTHGSDRPYKCEYCDFTSKYPPILKRHKNTLHAELVLRNTEPEILKCKKCNYTTTIKQNLKSHIRKHKKDKQFKCSECNFETAYRHNYVKHSKTHQQDIYRCDKCSFETKYYGHITRHMEQIHNEVMQESKHICEFCQTTSKERWKLKVHQERSIMKYQLRCPYCNFESIYKCQMRKHKKLHDDDNADGTFNFTKAPNTTPITQEEINKFIQTEPSDALYKCDKCSFETKFKGHMTRHLETIHNEIVEAGFRCEICCATFTEKYKLRQHVTKSNVKYHIKCTECNFETLYKCEIRRHKKIEHFDDRDRYTYSRHPDMLQNEQETNVDGFQCEKCPFKTLYETEFTKHAIEAHFLCKLCNNYFPDKWGLDMHIIGGKADDVIKCTYCDFGSLYKCETRNHINTHFTNLSELPKERAPQNTDIAPPNTTELRNLYNYMYESDLQKTMTELQQKLPTPYYRQFDGPSTAPMYQPPPEIPPPPETNPNQLGHSKFGSYLIDQNCIDWRSIQVIETNDSVNRYKCPLCDYPSKFKACVQRHFQRHHTNTENRPYKCVNCNFATKTKDAIALHSKRNPPGPLLHCQICDYTTNYKCAFNSHTKFHYGNKCKVCKQQYKHKHELIRHVATKHLGKGIKCHLCDFVALRKDSMASHILIHTGVKPFPCRLCDYATIRRTLLDVHMRKKHNLVGRVGVTMIDKSKIESLKVPCPEELKKKSEVKIDQITTNNSNNNSEINLIGPEDLIVQDDFYTGRDDNSAGRNDAEVGPNDNDANVNDVIDVDDDVMADDDDPINDDDYTPDYQDEPCPVDVLSEDVDVKPNISIIKLENKKDVPKTTHALTEFLTVEMVSEKDLVEEVEKEMYACDQCDYSSSSMKQLAAHISRKHDANKKYKCLLCPFRTPNKNRLKRHKEIHKNRSAYKCNLCSFKSKSKSFVVRHLRVVHNQIIKTEYSCAYCNTFTSNELQLEAHLKRNRTEKAVVCNMCNFETIYSCQMKKHKFSHVREERDEKDETLTKPKNTMYYTKVKLNDRSNIKAESDNASSDSSDDDENTFKCERCPFESISEKSMLKHFIRAHNGCKYCRRVFSTEVEFQEHIKNSKSTDTVRCFFCDFDSDYKCETCKHMCTHFIGFNGVEENDNFFLEDKMANLMNLVENQLQTDNKNKIENNEAKYFRNFDGNTENVDEDANNQIGLQVEENRYGNFLVNPTHIDNRSLKVEKPAHADAYQCPACEFSTKYRTSMQRHIQRNHTKNHYRPFRCIDCGFSAKSKDSIRKHNQRKISFKKLKCSQCSFTAHVKCALAVHQKRHFKSNCKVCGKVFSYKHPLIAHFAVTHLMIGLKCQYCDFYASLKETIIDHESTHTGVKAHRCSICDYSVNRKRLLQMHFRRYHLQERSPKPIRKFKVEVKLEDSSTGEVLSCDLCKYTNTSKNKLAMHIKRKHSMVFMCEKCPYTTPYKGALKTHSRTHTKYSLYKCIKCPYQTTFKGRILSHLAKVHKLGTGGKEAKLICEFCKVKHRSTYMLQVHQEQNRYESQTKCNACDFLTMYKCEMEKHEISHTDFKAEPICKQNEEKFYTEEVIRENVLKCRFCDFIGSKRGTVSRHEATHAGEKPYQCNICGFCSKTNMLLMQHWKKNHGYGIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -