Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000025.1:2641939-2646106[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.022 1.9 10.0 3.9 2 23 121 143 120 143 0.94

2 9 0.00038 0.032 15.6 2.6 1 23 169 192 169 192 0.97

3 9 0.0001 0.0086 17.4 1.4 1 23 198 220 198 220 0.98

4 9 2.5 2.1e+02 3.6 1.9 2 21 220 239 219 240 0.87

5 9 0.47 39 5.9 5.9 1 23 248 270 248 270 0.91

6 9 0.65 54 5.4 0.0 1 21 321 341 321 342 0.90

7 9 0.99 83 4.8 1.4 1 19 358 376 358 380 0.92

8 9 9.3e-06 0.00078 20.7 5.3 1 23 496 519 496 519 0.97

9 9 0.019 1.6 10.2 0.4 2 21 526 545 525 546 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.022	1.9	10.0	3.9	2	23	121	143	120	143	0.94
2	9	0.00038	0.032	15.6	2.6	1	23	169	192	169	192	0.97
3	9	0.0001	0.0086	17.4	1.4	1	23	198	220	198	220	0.98
4	9	2.5	2.1e+02	3.6	1.9	2	21	220	239	219	240	0.87
5	9	0.47	39	5.9	5.9	1	23	248	270	248	270	0.91
6	9	0.65	54	5.4	0.0	1	21	321	341	321	342	0.90
7	9	0.99	83	4.8	1.4	1	19	358	376	358	380	0.92
8	9	9.3e-06	0.00078	20.7	5.3	1	23	496	519	496	519	0.97
9	9	0.019	1.6	10.2	0.4	2	21	526	545	525	546	0.92

Sequence Information

Coding Sequence: ATGTCCGATCGCGATGAAGCCAATAACAGTCAGAGTGTTGCCGGAAGTGGTTTGGAGAGTGTCTATAGAAATACATTTGCGGACAGAAATATTTGCTCACCAGCGGGCAAAGAATTCCGCGGGTTCCCGAAACCCTGCGTGTCCCTGCCTAGGATTGACATAAGCCCGTTTCTTAAACCAGATTCCCCGGCAATACTGACGCGAAATCTTAAACCGGCATTCATACCAGACAGAAAACCCCCGAAGTCAATTCTAAAAAAGCCAAGTTACGACAAATTTAatgcaaaatgttttgtaaacatTACAAGAGATGATTTAGTAAAGTTGAAAGGTAGAGTTGTATCACCCAGCATGAGTCTCAAATGTAAAATTTGTCACAAAGATTACTCCAGTGTAAGAAAACTTCTCAaccacaaaaacaataaacacatGATAATTAAAGCCAAGTCCAAAAAGAGAGTATGCTTTTCTGACACAGTGACTGTCCATGAGCTGAAAGAGTACCACAAATGCCGGAAATGCCCTaagatttttgaggattatcgAGCCTTAAAAGCACATACAAAGAGTCAGCACAAAAAAAGGAAATGCTATATCTGCAATTACTGTTCAAAGAAATTCGTTGACCGAGTGTTCTTTAAAGTTCATATTAAATTGCATTGCGAATCTTGTGGTGAGCTTTTTACAAGCAAATCCAAATGTATGCTTCACAAGCGGTCCGTTTGTAAGATACTGAAGCTACATCAATGCAAAACCTGTGACTGTTCCTTTTTCAAATTGATGGATTTGAAAGACCACAGCTATGAACATATTAGTATGTGCTTTGTATGTGACATTTGCAAAGATCAGTGTCCGACTAAATGTGGTATTGCGCACCATATTTACTATCTACACTCAAAGAGGATTAAAAAGAGGAATCCTTGTTTATATATCACACGCAAACTCGGCAATGAGAGCCTGTTCCTTTGCCGATTTTGTGATGAAAGTTCAGTTGATCGAGACCTGATTGAACGGCATGTCCAGGTACTACCGGATTTGAACAACCGCGTGATGACTGGATACATGGATTACTACTTCTGCGATCAGTGTTTGAGAAAATACAGCACTGAAAAAGAAATGCTTCAACACAAGTGGAGCCATTTCTTGATAACCTCAGACAATTCTCAGAACAGGCaaaacagtattaaaaacaGCCTGAAAATATATTACAATATCAATGAGAAAATTCCAGAACATTTTAAGCCAACTGTTGTTCTTGAGAGAATCAAAGTAGATGAAAGTTTGGTTGAATCAACATCTTCATCGCCAATTCTTCTTGAGGAAGAAAAATCACCAATTAAAGAGTCAATATTGAAATCACTACTTTCTACCCCTCCTAAAGATGATGTTACTGAAGTTCTTGATGTACTGAATGATGAAATAGACATTAACAACATCAAAAAACCAATTGTTGATCCCAAATCTAAGAAGACCATTATTTCAAAACATCAGTGCCCGaattgTAACAAATTCTTCTCTTCCAACTATTGCCTAAATCGCCACATTGAAACGTTGCACAGTGACTTCGAGAACTTAAGGTGTAAAGTCTGCGAGGAAACGTTCGCATGGCCTTCTCTGCTCACACGGCATAAATGCATTCGTATACCAATAGTTGAAATGCCGTTCGAAGATGCAAGACCTGAAATACATTTCGACAATCTACATGAAATAGACCTGCAAAATCATGCGAGTATTACCGGCGATTCAGGAGAAATTACGAATGGATTTGACGATTTAAATATAACTGAAAATGATGATTACATGAATACAGTTGACTTTGAAATACCTGCTCCTATAGTTGAACTGAGCGAGTATGAAAACATATACAACAGTGTACCGAAAGCACCAATAACGCCTACGGTGGCACCAAACTTACAGAATGGACAGTTCAATCCGAATGTGAATAAAATGAGTGTGTTACAAAACCTAGGCTATAAGTTAGTGATGCAAGAAGTACCCATTGAATTCTAA
Protein Sequence: MSDRDEANNSQSVAGSGLESVYRNTFADRNICSPAGKEFRGFPKPCVSLPRIDISPFLKPDSPAILTRNLKPAFIPDRKPPKSILKKPSYDKFNAKCFVNITRDDLVKLKGRVVSPSMSLKCKICHKDYSSVRKLLNHKNNKHMIIKAKSKKRVCFSDTVTVHELKEYHKCRKCPKIFEDYRALKAHTKSQHKKRKCYICNYCSKKFVDRVFFKVHIKLHCESCGELFTSKSKCMLHKRSVCKILKLHQCKTCDCSFFKLMDLKDHSYEHISMCFVCDICKDQCPTKCGIAHHIYYLHSKRIKKRNPCLYITRKLGNESLFLCRFCDESSVDRDLIERHVQVLPDLNNRVMTGYMDYYFCDQCLRKYSTEKEMLQHKWSHFLITSDNSQNRQNSIKNSLKIYYNINEKIPEHFKPTVVLERIKVDESLVESTSSSPILLEEEKSPIKESILKSLLSTPPKDDVTEVLDVLNDEIDINNIKKPIVDPKSKKTIISKHQCPNCNKFFSSNYCLNRHIETLHSDFENLRCKVCEETFAWPSLLTRHKCIRIPIVEMPFEDARPEIHFDNLHEIDLQNHASITGDSGEITNGFDDLNITENDDYMNTVDFEIPAPIVELSEYENIYNSVPKAPITPTVAPNLQNGQFNPNVNKMSVLQNLGYKLVMQEVPIEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01501661;
90% Identity: -
80% Identity: -