Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: RREB1
Assembly: GCA_029255805.1
Location: JARACZ010000002.1:21493385-21510810[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.01 0.85 11.1 2.2 1 23 95 118 95 118 0.96

2 11 0.026 2.1 9.8 0.1 1 23 308 330 308 330 0.97

3 11 0.0014 0.11 13.8 0.4 1 23 339 361 339 361 0.99

4 11 0.00085 0.071 14.5 2.0 1 23 367 390 367 390 0.97

5 11 0.0035 0.29 12.6 1.6 1 23 749 772 749 772 0.96

6 11 0.00029 0.024 16.0 1.3 2 23 968 989 967 989 0.97

7 11 0.029 2.4 9.6 5.3 1 23 995 1018 995 1018 0.97

8 11 0.16 13 7.3 1.4 1 23 1050 1074 1050 1074 0.90

9 11 1.3 1.1e+02 4.5 0.2 1 15 1098 1112 1098 1121 0.78

10 11 0.026 2.2 9.8 0.3 2 23 1161 1182 1160 1182 0.92

11 11 0.018 1.5 10.3 4.9 1 23 1188 1210 1188 1210 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.01	0.85	11.1	2.2	1	23	95	118	95	118	0.96
2	11	0.026	2.1	9.8	0.1	1	23	308	330	308	330	0.97
3	11	0.0014	0.11	13.8	0.4	1	23	339	361	339	361	0.99
4	11	0.00085	0.071	14.5	2.0	1	23	367	390	367	390	0.97
5	11	0.0035	0.29	12.6	1.6	1	23	749	772	749	772	0.96
6	11	0.00029	0.024	16.0	1.3	2	23	968	989	967	989	0.97
7	11	0.029	2.4	9.6	5.3	1	23	995	1018	995	1018	0.97
8	11	0.16	13	7.3	1.4	1	23	1050	1074	1050	1074	0.90
9	11	1.3	1.1e+02	4.5	0.2	1	15	1098	1112	1098	1121	0.78
10	11	0.026	2.2	9.8	0.3	2	23	1161	1182	1160	1182	0.92
11	11	0.018	1.5	10.3	4.9	1	23	1188	1210	1188	1210	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCCGCAGCGgcgcccgcgccccccgcggCGGAGCCGCCAGCACAACAACAAATCAAAACAGAGGTCATCAGCGAGGCGAAAATTGATATGGAAAACTACAAAGAAGAAAATACAATAAGGGTGGAGAAAAACGAGGTCAGAGCCATGAGGACTACGAGCATCGACAGCGACAACCGCTCAGATAGAAGCGAGGAGGAGGACGCGCGACGGTCGCGCAAGCGAGCCGCGTCCACGTCGCCCTCACCCATCCCCATGGACAAGAGAAGTGCCCGCTTCGAGTGCCCAAAATGCCACCAACGCTTCGACTCCCCAAACACCTTCGACCTCCACCGCTTCACAGCGCACGGCGACGACACCCGCAGCGGATTCGACGACCTCACTTTCGTTGACTTCTCCATCAAAAAGTTCCCGGAAATAGCCCGCGGAGTGTGCGAGAGAAATCCGCACATTTCCATCACAGAGCAGCGGTTCAGATGCGATTTGTGCTCCAGAGATTTCCCGTGCGGACAGGCTTTGGATATCCATAGGAAATCGTGTGCTAGCACTAGGATCCAGAGCCCGGAGAGAGACCGCAGGGAAGACTTCTTCGCAAAACTCGATCTCAGGAACAGATCCTTCGGAATTGCAGGAACCCTAACTCCACCTATGGACAGATTTACACCAAAGTTTGATGACAGTCATCTGCCTACAAACGGTATCAGACATATTGATGCTGCAAGAGATCTGGCTGATATACAATCGATTCTGAATGTCACATCGACTGGTAGTCTATTGGAAAGACTCACTGGTACCAGAGTTGCTTTGGAAAGTGCTGTGTTGACTCCACCAGATACAATAGTAAAGGAACGCGACCAAGAAGAGACACAAGACAATTTTGCGGCAGAATTCAGAAAGATGAAACTACGTGGAGAGTTTCCGTGTCGACTGTGCCCAGCTAAGTTTCCGAACCTGAGAGCTTTGAAAGGACACAACAGAGTGCATCTTAGCGGGACAGGACCTGGCCCTTACCAATGCAACATGTGCCCACACGCCTCTCTCGACAAGGCTGCTTTAGTTAGACACATGCGAACCCACAATGGAGATCGCCCATACGAATGCGCTGTTTGCAACTATGCTTTTACAACCAAAGCCAACTGTGAACGACATTTACGGAACCGACATGCTAAAGTCACAAGAGAAGATGTTAAACGCTCAATCATTTACCATCCATCCGAAGACCCAAACAATGACGAGGTAAATTCTAAACTTGCTCGTGAGGAAGTCAAAAGATCACTTGCTTTCCATACTCCAGAACTCGAAAGGCGAAATGAAGTGACAGGCCGTGACACTCCGCTTACTCACTTCGCCCCAAGTTTCATTGCTGACAGGCATCCAGTTGCGTCTTTGATTTCAAAACCAACACAAGAAGTGCCTCTGTCTCTAACACCAAGAGAGAGCGAGATACCCGTGCCAAGGATCAAAGTCAAAGGAATCGGACAACTAACTCAAATACCCGAATTCCGGACACCTGAAGTCAACTACAAATGTAATGATGTCCAGTCGGAGAGTTTTGACGAAGAAGCCCCAGTAGACCTCAGCACAAGTGACAATAACAGCTGTGACGTTTTAGATCTCAGTAAAAAGAAACGTGACACCGAAGATGATGAGCCTAAAGCTCCTCCCAGACCGAGCTTTGAACCCGACCCAGCTGCTGCTGCATCGGCATTCGAGAAGACAAGATTCCTTTTAACTCAACAACAAAGATTATTTGAAAGCAACTTTCCAAAAATCGACGCGTTTTACGCATCTCAGCTTTCACAACTATACGCTGGAGCTGTACCTGGACTACCGGGCCTACCTCTGCCGCCTTCCTTTCCACTCAACCCTTACTTTCTCCCACCTTCGTTTTTTCCTAATGCAACAGATTCTCAAGAACTTGCCGAAATAAAACAGCGTATACAAAAGGAATTGATCCGGGGATTGAGCATGTCTGGAGGAAGGCTGGTTAGCAGTGACCAGGAAAGCCAACCGAAGCAAGAGCCTGAAGAGGAAGACCAAAAACCAATTCCACTAGCCAGGTCTCCGTCTCCGACTCCTACTTCTGAATCTCCGAGACCAACAGTGCCTAACAGCCTTGTTCCGAACAGTCTTGTGCCCAATAGCCTAGTTTCACAAACGGATTCTGTGAAAATGGTAATAAAAAACGGGATACTTATGCCAAAGCAGAAACAAAGGAGATATCGTACTGAAAGACCCTTTTCTTGCTCGCAGTGCTCAGCCAGATTTACACTTCGCTCGAATATGGAGAGACACGTAAAGCAGCAACATCCCCAGCACTGGAGTGTGAGGCGTCCGGCCCCACGTGCTCCTCCGCCATATCCTACATCAGATACACTCGCTGACCGTGTCAAGTTCGCACTACTTGCCCGTCATCTCGAAAGACCTTTGCAACAAACAGACCGTTCTCCAATCAGAAGAGATTCTGATGAAGTCGCCGATAACGAGGAAGATGAGGACGATGCTTTGATAATAGACGAAGAGCCGGAAGACCAAAAACCTGAAGAAAACACAGCAGCACATCGCGCTGCTGCCGAAATATTAATGGCTTCTCGGCAGCAGGAACTGCACAAAgactttgatttaaaaattgccGGTAATCTTATCAACAAACCGACTCCTATCCCTGCGAGTGCTGAAAAAACTGATACAGGAACGGATCCTATTGCAGCACCCAATGACTTGACTGTACCAGTTGTACCAACTCGTAGTGACGAGGAAGAGGACGAAGAAGGACTGGTTGCCTCAACTAGTGAGGGCAACAACTCTGGAAGTGatgaaaataaATCGGACTTGGACACTGGAAATCAACCACCAAAGAAGAAGTCTGCATACAGTCTGGCCCCTAATAGGGTGTCCTGCCCTTACTGTCATCGGAAGTTCCCGTGGTCCTCATCCCTTCGCCGACATGTGTTGACTCACACCGGCCAGAAGCCTTTCAAGTGCCCTCACTGCCCCCTTCTATTCACTACCAAGTCTAACTGCGACCGCCATTTGCTCAGAAAGCATGGAGGGTCCGCTCGGGCGATTCTTGCCGAGCCAATCCCTGAAACAGTTCCGACTCCCCAAAACGTTGAAAACAGAAACGTGCCTGAAAGGCCCTTCAAGTGCGCTTCATGCCCCACTAGCACTTTTTCATCGATGGACACTTTGAAGAAGCATATGTCATCAAGACACGGATCTGGAGACTCGTCACAGCCAGGCTCACCAATCCCTACAGTAGAAGACACTACTGAGGGATTAGTCTTCAAATGTCACCTATGCGAGGCGTCTTTCGGTGATCGTGCTGCATCTTTGGGGCACTTGTCTTCGGAACATTCTTCAGAATACGAACAGCTGGTCAGCAAAGGCGCTTTGGACGCAGCCAGTGACAGAAGTGAAAGCGCTGATGACGATGAGCGAGGGAAGTTTCCGGATCATGCCAACAGAAAGGTGGTATGTGCGTTCTGCATCCGTCGTTTCTGGTCCGCAGAGGACCTCCGTCGTCACATGCGCACTCATTCTGGCGAGAGGCCGTTCGCTTGCGACCTCTGCTCCCGCCGGTTCACGCTCAAACACAGCATGCTGCGGCACCGCAAGAAGCACAGGGAAGAAGCCACTGATGACGAAGAAGTCACGCCACCAAACACGCCGAGGGAAGATGGTGTCACTAATGGATACCGCTACCAAGATGATGACTCCGGCAACGAAATCCCAAGCAACGTCAACAACAACAACTCACCGCCTGCTGCTCACTACGACAAGAAGCTGAAGCTAGAAATGACTTCACGTAAATACTCGTCGGAAGCCGATAACGACGGAGAAAACGGCAGCGACCTCATCGGAAAATTGCTCGGAATACGCGACAACAAGCTTCTCAACAAACTTCTTTCCTCGCCTGATGAAGcagcaaaatttttgggtgtaaACAAATGA
Protein Sequence: MQGAAAAPAPPAAEPPAQQQIKTEVISEAKIDMENYKEENTIRVEKNEVRAMRTTSIDSDNRSDRSEEEDARRSRKRAASTSPSPIPMDKRSARFECPKCHQRFDSPNTFDLHRFTAHGDDTRSGFDDLTFVDFSIKKFPEIARGVCERNPHISITEQRFRCDLCSRDFPCGQALDIHRKSCASTRIQSPERDRREDFFAKLDLRNRSFGIAGTLTPPMDRFTPKFDDSHLPTNGIRHIDAARDLADIQSILNVTSTGSLLERLTGTRVALESAVLTPPDTIVKERDQEETQDNFAAEFRKMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPELERRNEVTGRDTPLTHFAPSFIADRHPVASLISKPTQEVPLSLTPRESEIPVPRIKVKGIGQLTQIPEFRTPEVNYKCNDVQSESFDEEAPVDLSTSDNNSCDVLDLSKKKRDTEDDEPKAPPRPSFEPDPAAAASAFEKTRFLLTQQQRLFESNFPKIDAFYASQLSQLYAGAVPGLPGLPLPPSFPLNPYFLPPSFFPNATDSQELAEIKQRIQKELIRGLSMSGGRLVSSDQESQPKQEPEEEDQKPIPLARSPSPTPTSESPRPTVPNSLVPNSLVPNSLVSQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTSDTLADRVKFALLARHLERPLQQTDRSPIRRDSDEVADNEEDEDDALIIDEEPEDQKPEENTAAHRAAAEILMASRQQELHKDFDLKIAGNLINKPTPIPASAEKTDTGTDPIAAPNDLTVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSDLDTGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETVPTPQNVENRNVPERPFKCASCPTSTFSSMDTLKKHMSSRHGSGDSSQPGSPIPTVEDTTEGLVFKCHLCEASFGDRAASLGHLSSEHSSEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCSRRFTLKHSMLRHRKKHREEATDDEEVTPPNTPREDGVTNGYRYQDDDSGNEIPSNVNNNNSPPAAHYDKKLKLEMTSRKYSSEADNDGENGSDLIGKLLGIRDNKLLNKLLSSPDEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00275802;
80% Identity: -