Klyc024076.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000025.1:778084-797027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0094 0.78 11.2 0.9 1 23 381 403 381 403 0.97 2 11 0.0052 0.43 12.0 1.0 1 22 410 431 410 433 0.90 3 11 0.28 23 6.6 1.9 1 23 437 459 437 459 0.96 4 11 0.00027 0.022 16.1 3.5 1 23 464 486 464 487 0.96 5 11 0.023 1.9 10.0 0.4 2 23 491 513 490 513 0.94 6 11 0.0048 0.4 12.1 0.2 1 21 517 537 517 538 0.95 7 11 0.0006 0.05 15.0 0.2 3 23 550 570 549 570 0.94 8 11 0.042 3.5 9.2 2.1 1 23 597 620 597 620 0.92 9 11 9.2e-07 7.7e-05 23.8 0.6 2 23 627 648 626 648 0.96 10 11 0.0059 0.49 11.8 7.6 1 23 654 676 654 676 0.97 11 11 2.2e-05 0.0019 19.5 0.7 1 23 682 705 682 705 0.97
Sequence Information
- Coding Sequence
- ATGAATTCAAACATATACCGCGGAGATTTGGAAGCCTGTAGAGTGTGCCTTTCAACTGACGTCAAACTAATAAGTTTGCAGGAGAGCAGATTGAAAAACACCTATTCAGAGTTCAGTGGCGTGCCGATAACGGCCACGGACGGTCTGCCGCAACACATATGTGTGTTCTGCTGTGCCTTGCTCAAGAAGTCTTCAGAATTCCGACAAAAATGCAAAGCCACTTACACTCTGCTGTCTGGACATCTTTTAGAAATACATGCTCTAACTACTTCTTACATAGAAACTTTAGACAAATCACACCTTCAAATACCACTAAAAGACACGGGAGTTTTAGAATGCAACTGTCTGCCTGACGATGTATTCCCAGCTGAACCCACTTTTAAGCACAGATTAAAAAGTGAATCCGAATCTGCACCCTTATCTGACGATGAACAAATTAATGAACCACTAGAATTCGAATGCTTTGACAACAATGATGAATATTACGATAATTACAAAGAAATCAAATCAGAAGATGAAGAATTGAAAACGGAATTCCCTGTAGAAGTAATTGATAAAAATCACAAAGAAGATAAAAAAGAAATCGTCAGTAAAAAGGAACAAAAAGTCAAAAGGAAATTGAAAACGAAAGATTTTCCGccgataaataaaaaacaacgaaTCACTGATAAAGACGAGGATCGAGTcgaagattttaaaaataagtattgcAGTAAAGTTATGAACTCAGACAAAGAAACGTTTTATTGCTAcattttcgaaaaatatttgaaaaagtgTAAGAAAAACAATGGTTCCGAAGTACACATCGCATCAGACTACCCCGCGTACATCAATTTGGACAACCATGACACGAAAGCGCaagtaaaaatagaaataagcAATCCCAATACGAACCAAACGAAATTTTTCGAATTTATCAATAACAAATACGGTAATAGCAACACTCCCAAAGAAAAGAAGGAAGTTAGAGATATCGGCAAAATGAAAATGAGGAAAATTGCAAAAGGCACGATAACGAAAGAATATCTCGAAGATCTATCAAAAGAGTGTAACTTCGATATAGTTTTGATGCTGAAAGAGGAGAAGATACAGGATCTGCTGAATAGGAAAGAGACGGAGAAATACAAGAAGGCCAAGTTCAAATGTGACCTCTGCTACACGGGTTTCGCTACGGAGAAGACTTATCAGAACCACAAGGCGATACATGACCCGAGTTCCGGCCCGCACGAGTGTGAGATTTGTCGCGTGCGGTTCAAGAACAAGAAGCTATGGCGGAGTCACATCGGAGCCCGACATCGGTACAAGTTCATTTGCCGACAGTGCGGACAGGTGTTGCGCTCCACTACGGACGCGCGCGACCACCACCGCTTCCACTCCGGCGTTAGCTACCCGTGCGAGCACTGCGGGAAGACCTTCGAGAAATACGCAACGCGCACGAACCACGTGCGCATCCACCACGGCAGCGTGACGTGTGACATCTGTCACATGAAGTTCACCGGGGAAGCCGGCCTCGTCACGCACAAGACTAAAGCGCACAAGGAGATGTTCAAGTGCTCGTCGTGCGGGGTCGCGTTCCACAACGCCAACGCGCTGTTGAGACACACGCAGCTCACCGCCGGCGGCTGCGGCCCGCACATCAGGCCTTGCACGAAGTGCGGCGAGAGTTTCACAGAAGCGGATCTCACGCAGCACATGATGGACAAACACGGACACGAGAACAAACGCCTCAAGAACTGCAGACAGCCGTACAGGCGTCggcgcgggaaggatgaggaaCCTTTCACTTATATGTGTGAAGTGTGCGGGAGAGACGGGTTCAAGCACGAGTCGACGCTGCGATACCACCAACAGAAGCACTCGGATGTGCGGTCGGTGGTGTGCGACGTCTGCAAGAAGACTTTCAAGGACAAATACCAACTCCGGATCCACATGACGATCCACACAGACGAGCGTCGCTTCCAGTGCCGCTGCTGCTTGAAAGCGTTCCGGCAGCAACAACACCTCACCTCGCATATGAAGACGCACACGAACGAGAAGCCATTCGCGTGTGACATCTGTCAGAAGCAGTTCAAGTACAGCACCTCGCTCGCGGAGCACACACGCACCGTCCACGAGTGCCTGCCGCCGAGAAAACGGGCGCGCAGGGACACGTGA
- Protein Sequence
- MNSNIYRGDLEACRVCLSTDVKLISLQESRLKNTYSEFSGVPITATDGLPQHICVFCCALLKKSSEFRQKCKATYTLLSGHLLEIHALTTSYIETLDKSHLQIPLKDTGVLECNCLPDDVFPAEPTFKHRLKSESESAPLSDDEQINEPLEFECFDNNDEYYDNYKEIKSEDEELKTEFPVEVIDKNHKEDKKEIVSKKEQKVKRKLKTKDFPPINKKQRITDKDEDRVEDFKNKYCSKVMNSDKETFYCYIFEKYLKKCKKNNGSEVHIASDYPAYINLDNHDTKAQVKIEISNPNTNQTKFFEFINNKYGNSNTPKEKKEVRDIGKMKMRKIAKGTITKEYLEDLSKECNFDIVLMLKEEKIQDLLNRKETEKYKKAKFKCDLCYTGFATEKTYQNHKAIHDPSSGPHECEICRVRFKNKKLWRSHIGARHRYKFICRQCGQVLRSTTDARDHHRFHSGVSYPCEHCGKTFEKYATRTNHVRIHHGSVTCDICHMKFTGEAGLVTHKTKAHKEMFKCSSCGVAFHNANALLRHTQLTAGGCGPHIRPCTKCGESFTEADLTQHMMDKHGHENKRLKNCRQPYRRRRGKDEEPFTYMCEVCGRDGFKHESTLRYHQQKHSDVRSVVCDVCKKTFKDKYQLRIHMTIHTDERRFQCRCCLKAFRQQQHLTSHMKTHTNEKPFACDICQKQFKYSTSLAEHTRTVHECLPPRKRARRDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -