Klyc026405.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000030.1:2351010-2364133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0024 0.2 13.1 2.8 3 23 237 258 224 258 0.92 2 10 0.48 40 5.8 0.1 3 23 281 302 280 302 0.94 3 10 5.7e-05 0.0048 18.2 0.7 2 23 325 346 324 346 0.96 4 10 0.0043 0.36 12.3 0.1 1 23 350 372 350 372 0.98 5 10 0.00026 0.021 16.1 0.1 1 23 377 400 377 400 0.95 6 10 1.4 1.2e+02 4.4 0.5 2 22 407 427 406 429 0.85 7 10 0.00015 0.013 16.8 0.6 1 23 436 459 436 459 0.97 8 10 4.9e-05 0.0041 18.4 0.7 1 23 465 487 465 487 0.94 9 10 9.7e-06 0.00081 20.6 1.5 1 23 493 515 493 515 0.98 10 10 2.3e-05 0.0019 19.4 3.6 1 23 521 544 521 544 0.98
Sequence Information
- Coding Sequence
- atgAGCACATCAACAGCTAAATCCAAGGGCCCGGTGTTCAATCCGGGCCTGTGCCGGTGCTGCGGCGTGCTGCGCAAGTGTAGGCTGCTCAACACCGAGTACGAATTCCAGGAAGTCAAAGAAGTGTATTCTGACATGATGATGGACTGTTTTGGCTTACTGTTATCATATTTGGATGGTAAGCCGACGGAGCGTCTCATTTGTGCAGTTTGCGTGCACAGACTCCGCGATGCTCTTGCCTTCAGAAAACAgGTGCTGCAATGTGAGGAAGCATTTATTCAAGTGAGGCTGAATGACAACAAGGATGACGAGGACGCGAAACCGTCGCACATTATATCCCAAAGCGGGACTAAAGTGGAGATAGAGATTGTCAAGAATGAGCCACCTTCGCCGGAGCCCGCCTCGCGCGACGATAGCGCGGAcgaacgaaccgatgaacccgaTGAACCGTTGGGCAGCTTAGATAGTGACCCGGTGGACATACAGCCAGATGAACCAAGTGAGCCGCCGGCGAAACGGGCGCGCGTGCAGCCGCGCGTGCAGCCGCGCGTGCAGCTCGGGAGTGTGAGGAAGAGGACGTtgCCAATGTCAAAAATGCAACAAATAATTCGCGAACGCGACACCTCATACATGATTCTAACCAACCTGCTAACCATAGTGGAATTCTCGTACGTCTGTCCTTTCAAATGTCGACACAACAATCTATTATGCTACTACTGCGGGAAATCGTTCACCGATCCGCAAGAAATCCGGTCGCATACAGAAGAACAACATCAGTCGAAGAAATTTAAAGTTGGAGAACGAAAAACCGTTATAAAAGTTGATATTTCAAAGGTCGACTGCAGGCTTTGTCCGGCGAAAATCGGATCTTTGGACGAATTTAAGAAGCATATTTCAACAGTACATAATAAAGCTTACTATTTCGACTACCAGGACTCGATTCTGCCGTTCCAGCTAAAATTGGACGAATGGAAATGCGCTGTTTGCGATAAGGAGTTCCCGTACTTTCACGCTTTGAATAAACATATGAACGAGCATttcagCAATTACGTATGCGAGACCTGCGGGCTGGGGTTCGTGGACATCGGGCGCTTCATGATGCACCAGCAGCGCCACGAGGACGCCGACTACCCTTGCCCGGAGTGCGGGAAGAACTTCAAGGCCCTTTATAACAGAGAGCTGCACATAGACCGCGTGCACAAAAAACGCGGGCGCGTGTACTGCCCCAAGTGCGACGAGATGCTCATGTCGTACCATCAGAAGCTCAAACATCTAGTAGAAGTGCATGGGGAGGCGCCACTCAGCTTCCCGTGCTCTATGTGTGATAAGgtTCTGGATAGTCGGCGGTCGCTTACGATACACAAAAGAAAAGACCACTATAAGGATTACAGATACGAGTGCCAGATCTGCGGCCAGAAGTTCTTCACGAACTTCGCGTTGAACAACCACATGCCGACGCACACCGGCGAACGCAACTTCAAATGCAAAGTCTGCGACAAATCTTATCCGCGGCTGAAAACGCTCAAGGAACATTCCAGAATACACACGAACGATAGAAGGTACCGCTGCCACGTGTGCGGGCAGGCGTTCATTCAGAACTGCAGCCTAAAGGGACACATGAAGAGCCAGCATCCAGAGTATGGGTAA
- Protein Sequence
- MSTSTAKSKGPVFNPGLCRCCGVLRKCRLLNTEYEFQEVKEVYSDMMMDCFGLLLSYLDGKPTERLICAVCVHRLRDALAFRKQVLQCEEAFIQVRLNDNKDDEDAKPSHIISQSGTKVEIEIVKNEPPSPEPASRDDSADERTDEPDEPLGSLDSDPVDIQPDEPSEPPAKRARVQPRVQPRVQLGSVRKRTLPMSKMQQIIRERDTSYMILTNLLTIVEFSYVCPFKCRHNNLLCYYCGKSFTDPQEIRSHTEEQHQSKKFKVGERKTVIKVDISKVDCRLCPAKIGSLDEFKKHISTVHNKAYYFDYQDSILPFQLKLDEWKCAVCDKEFPYFHALNKHMNEHFSNYVCETCGLGFVDIGRFMMHQQRHEDADYPCPECGKNFKALYNRELHIDRVHKKRGRVYCPKCDEMLMSYHQKLKHLVEVHGEAPLSFPCSMCDKVLDSRRSLTIHKRKDHYKDYRYECQICGQKFFTNFALNNHMPTHTGERNFKCKVCDKSYPRLKTLKEHSRIHTNDRRYRCHVCGQAFIQNCSLKGHMKSQHPEYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501449;
- 90% Identity
- -
- 80% Identity
- -