Klyc022991.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000023.1:1752040-1783413[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.015 1.2 10.6 0.0 1 23 515 538 515 538 0.95 2 17 0.031 2.6 9.6 0.7 2 20 650 668 649 670 0.92 3 17 0.048 4 9.0 3.8 2 23 706 727 705 727 0.95 4 17 2.5 2e+02 3.6 2.7 1 23 739 763 739 764 0.91 5 17 0.00042 0.035 15.5 0.3 2 23 770 793 769 793 0.96 6 17 0.0023 0.19 13.2 0.4 1 23 799 821 799 821 0.95 7 17 0.017 1.4 10.4 3.4 1 23 827 849 827 849 0.98 8 17 0.76 63 5.2 0.1 2 20 860 878 859 880 0.89 9 17 0.33 28 6.3 1.3 1 23 958 980 958 980 0.93 10 17 3.4 2.9e+02 3.1 7.4 1 23 987 1009 987 1009 0.95 11 17 0.0019 0.16 13.4 1.8 1 23 1049 1072 1049 1072 0.95 12 17 0.00013 0.011 17.1 1.6 1 23 1079 1102 1079 1102 0.98 13 17 0.0051 0.42 12.1 0.1 2 23 1126 1148 1125 1148 0.96 14 17 0.011 0.91 11.0 0.0 3 21 1179 1197 1177 1198 0.94 15 17 0.0012 0.1 14.0 1.3 1 23 1240 1262 1240 1262 0.98 16 17 6.9e-05 0.0058 17.9 0.1 1 23 1268 1290 1268 1290 0.98 17 17 0.0012 0.1 14.0 0.9 3 23 1298 1319 1296 1319 0.94
Sequence Information
- Coding Sequence
- ATGTCAGAAGCACCGCCATTGATGCTATGCTTGGAGAAGGCGGATGGCCAGGAGGTGTCTCTTCAAATTCATCCGACAGACGACTTCCACACCTTCCTTATTAAGGCCAGATCTCTAGTCGGTTACGAAGTCGACATAAACTCTTTAACTCAGAACCAACCGGTGAACCTTTCCGACAACGTCTACCAATTCCTACTCAACTCGGAACATGTTTTAAATTCACAAATGAACAAACCTGTACTGTCTAATAACGAGGATTTGTACATACTAGATGATGGTACTCAGATTCGAGCGTCACAGATACATTTTGATAACGAAGACCCACCAGTAGATCTAACGGCTGAAAGAATACCATTTGTCAAATATAATGATGCCTTAGACGATGTAGAGTATGAAAATACAGCTGAGGTTGAAAATAAGATGTTTAATATCGTTGAAAGCCCggttagATACTCTAATGATGTGACCATACCTTTTAGGCTATTAACTGCCAATCCTTTAAAACAGAGCAACGCAAATTTTAAATCAGGATTCGAAGCACAGTTCACCAAGTATTTAGAAGTGAAACACCAAATTAAAACTTACGCGACTTTAAACACTGTTACCAATCGAAATAAATCTCCTAGAAGTCTCATCCGAGAGAATTTTAAAAGTTATGACCACAATTATCAAAGAAACAATGACGATTACAATCGTTATACAAGAGAAGATATATTAAACATGTTCAAAGATGCTCCCGTCTCGGCTGCCCCAATAGAGAGCCAAGGAAACCACTTAACAGAAAGGAGACGTCACTCACGGAAAAGTGACCCTACTAGATTAGTGCATAAAAACTTCCCCAAACCAATCTCCTACGTAGACGTTGACGGAGTATTAATAGCCGAATCCGAAAGCCAAAACTGCTTTATATGTTCCAAATTCGTAAACAGCCACGAAAAGTTGTACTTATTCGACAACGAAGACCAAAAGCTGCATAGATCATCTCCGCAAAAGAAATTGTCGACTCAACTCAAAATTATCTGTGAACAATGCTTGGAAAATGATTTCAAGTCTAGTAGAAAAACTCCCAACCAATCTTTGAATCCAGACGAGTATTTAGTTATCAAAAACAATCAGCAATACATAGTCGAAAAGATAAACGGTCAACTGAACttcgataaaaataatgttgcgcCGAAAGCAAATACTGAACAGTCCCATGTTACAATGAACGGTTCTATTGAAGTGGTGAAAGATGAAGTTATTTCTGAAGAAGTAAAGACACAGACACAGCTAAAAACTCATGATAATTCTGTAGTCAATAATGGTCTCAAGGCACATTCGAGCGATGTAGAAATAATAGAAAACGAGCCGGAATTCGATGACATCGACAACTTGGAGGAAGCTGACGAGGAAGTCATAGAGTTTCTGGGAAAGTATCAGTGTGATGATAGCGAGATCAAGGAGTTGAAATGCAGATTCTGCGCGATAATATTTGGTGAGATAAGCGAAGTAATCGAGCATGGTTACGTGCATAAACACGAAATGGACGACGGTGCCGTGTTCCCATGCCCCCTGTGTGATTACGGATACGCCGACTTCAAATGGTTGAAGGGTCATCTAAAAGCCGCGCACGGGAAGACCGCCCAGGTCAAGACAGAAATTCCATCTGAGGACTCCAAACCTGAGGACGAAGTTAAGAAGGAGCTGCCTGAAAATGCCTCGTCGTCTCCTGTTGCGAAAAGAACGCGCAGTGCCACAAGGGCTTCGGATAACGAAACTCAGAAAGAAATCCGTATAATTTCCTTTCTAGAGACACCTGACAAACAACAAGGGAGCGAAACTTTAGAACAGAAGTTCGAAATAAAGATGGAGGTAAAACAGGAGGCTCTGGACAGCAGCGACGAAGAGATCTGGATCGTGCAGGCAGCTGACGATGCCGATaaacaAGCCGAGGCAAATAAATTGAAATGCTACAACTGCAGTGAAGTGTTCACGTCGGCGGAGAGTCTGAGTTCGCACGCGTGTCGGCGCGGACGCAAACAGAAGAGTGTGTTAGAATCACCCCGAGATGACTCGAACAAGaaACCGCGTAAGAAGAAAGGCAAGGAGCCCAGCTCGGACCCTCAGATAGTGACCTGTCACAATTGCAACGAATCTTTTACCTCCAAAGTGAGACTCAAGTTCCACATgCAATTCCACGAGTCAACAATCCTGCTAACGGCAGACGGCGAGTACACGTGCACAGAGTGCGACGACACGAAATTCCCCACGGAGACGGCGCTGTTTGACCACGTGCACTTCCAACACCACAAGCAGCGGAACTGGCAGTGTCCCATAGCTAGCTGCGGGAAGACATTCTATCTGAGggcAACGCTAACAAAACACAGCCGAACGCACACAGACACAAGGCGTTACGTGTGTGGCACTTGTGGGAAACGGTTCTTCGATAAACAGACCTTGGACGAACACGGGGTTACGCATTTACGGATAAAACCGTTCCAATGCCACATCTGTATGAAGCAGCTGACCAGGCGATCTCGTCTGCGAATGCATTTGAGGGCTCATGAGGAAGAATTGTGTCCAAATTTAGTGTTAGTCTGTGCAGTATGCAGCCGTGCTTTTAGAGACCATAATGATGCGCAGGAGCACGTGACTCGATCTCCGGAATGCATAGAACAGTTCACGAAGGAAATGAAGGCTGAAGAGTGCACCACTGTGCAACTGTCGCCCACAAGCGGCTTAGTCAGACACACTGTGCAGATAGTCGAATCTCCGAAACTGTCGAAGCCCATCCGGCGCGAGGCGTCGGGCCCGGAGGCCAAGCAGTTGCTGAGCGCAGTGCCGGAGGAGGCGCTGCCTATAATACGCTGCGTCGAGATTGAGAAGGCGTTCAGATGCGAGTACTGCGAGGAGGTGTTCTACTGCGAGAAAGGTCTGAACGAACACCGCGTCATCCACAAGGGTGTCAAAAATCCCTTCACCTGCCACATCTGTAAGGTCACCTTCGCTACTTACTCCAgATGTACAACGCACAAAACTACCCACGGCTTCTACAAGCGCTCGTTAGCCGCCACCATTCGAGACACGAACGCCACTAAACAGGACGTCGCCACTTCCTGCACCGGCATTTTAGGATACGGCGATTTTCCTGTGGTCAAGCATTTCCTTTGCGAGGATTGTGGCCGTTCCTACCTTCACTGGACTTATTTACAAGTACACCGCCGCATGAAACACGccagtgacaacctgtcatacaAGTGTAACCAATGTGACATCTCGTTTGTTAACAGTTGGAGTTTATCATACCACAGGAAAAAACAGCACACGAAAAATGAGCTCGAAAATGTAGCTACCTCCACTAGCAAACCGAAAGAAAAGGAAGGTTACAAGATTCCCTGCAGAGATTGCGATGAGGTGTTGCCAAACAAAACTGCTCTTTACAAACACAGGAAGAAGGCTCACAGCGACATGACTTTAGGATTTAATAACAACAGTAACGATAATAACACTGTTGGCCCAAGCGTGTTCGATTGCGACGGCCGCGTATTCTGGTGCGCTGGTTGCGGGCGACGTTACGCGTCTCGCTCGGGACTCGAAGCGCACTCGCGCAGTGGAGTGTGCGGGCCGCCACCGCCCGTGCCGCCGGGGCAGGACGGTGTGACACGATCCTGCCGCGGCCAAGAGCTGGACGCGGGTCTAGTGATGCGCTCTCGCACGCACACTAGCACACCGACGCACACATGCGGCGTGTGCGCACACGCGTTCAGGACACTGTCGATGCTGACCGAGCACGTCCGCGTGCACAGCGGGGAGAGACCTTATCCTTGTGATATCTGCGGCGTCGCCTTCCGCAGATCCACTGCAATGCGTAATCATCGCCTAATTCACTCTGGGGTCCGCGCGTGGGCGTGCATGAGGTGTCCTAAACGCTTCCGCATCAGATCCGACTTGAGGACGCATTTGAGGCTCAAACATCCTACCAAACTGTATGTCATTGAAGTCCCAGGGTCGAACCCCACACCCGAAGAAGTGATGGAATGTCTCACCGCGAATGATATTCCACATGAGAAAGTTATCGAGATCACCAAAATGACTTTTCCCAAGAACATGACAAGCGTGGTGCCGAGCGGTCCGCGCGCGCTGGCGATGTTGTCGCACGTGCCGCGGACGCAGGTCGCCTGCAGCCTCGCCAGCCCTGAGAAGCCTTTCGATCTGCAACAGCACGTGTCGGtggcgcggcgcgggcgcggcatCTCCAAAAACCCAAGAAAACCGAAAATACTGCAACGAGGTGGCAACACACAACTCACGCCCATTACCTACTCGCTCAATGTCCCTACTAGTCAGgACTTATCAGACTTGAATATGCAACTTCTGCTAAGAGATGGCGTGCTGGTGAATGGCAACCAAATGGTGCAATTGCAACTTAACGATTATAACtgttga
- Protein Sequence
- MSEAPPLMLCLEKADGQEVSLQIHPTDDFHTFLIKARSLVGYEVDINSLTQNQPVNLSDNVYQFLLNSEHVLNSQMNKPVLSNNEDLYILDDGTQIRASQIHFDNEDPPVDLTAERIPFVKYNDALDDVEYENTAEVENKMFNIVESPVRYSNDVTIPFRLLTANPLKQSNANFKSGFEAQFTKYLEVKHQIKTYATLNTVTNRNKSPRSLIRENFKSYDHNYQRNNDDYNRYTREDILNMFKDAPVSAAPIESQGNHLTERRRHSRKSDPTRLVHKNFPKPISYVDVDGVLIAESESQNCFICSKFVNSHEKLYLFDNEDQKLHRSSPQKKLSTQLKIICEQCLENDFKSSRKTPNQSLNPDEYLVIKNNQQYIVEKINGQLNFDKNNVAPKANTEQSHVTMNGSIEVVKDEVISEEVKTQTQLKTHDNSVVNNGLKAHSSDVEIIENEPEFDDIDNLEEADEEVIEFLGKYQCDDSEIKELKCRFCAIIFGEISEVIEHGYVHKHEMDDGAVFPCPLCDYGYADFKWLKGHLKAAHGKTAQVKTEIPSEDSKPEDEVKKELPENASSSPVAKRTRSATRASDNETQKEIRIISFLETPDKQQGSETLEQKFEIKMEVKQEALDSSDEEIWIVQAADDADKQAEANKLKCYNCSEVFTSAESLSSHACRRGRKQKSVLESPRDDSNKKPRKKKGKEPSSDPQIVTCHNCNESFTSKVRLKFHMQFHESTILLTADGEYTCTECDDTKFPTETALFDHVHFQHHKQRNWQCPIASCGKTFYLRATLTKHSRTHTDTRRYVCGTCGKRFFDKQTLDEHGVTHLRIKPFQCHICMKQLTRRSRLRMHLRAHEEELCPNLVLVCAVCSRAFRDHNDAQEHVTRSPECIEQFTKEMKAEECTTVQLSPTSGLVRHTVQIVESPKLSKPIRREASGPEAKQLLSAVPEEALPIIRCVEIEKAFRCEYCEEVFYCEKGLNEHRVIHKGVKNPFTCHICKVTFATYSRCTTHKTTHGFYKRSLAATIRDTNATKQDVATSCTGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHASDNLSYKCNQCDISFVNSWSLSYHRKKQHTKNELENVATSTSKPKEKEGYKIPCRDCDEVLPNKTALYKHRKKAHSDMTLGFNNNSNDNNTVGPSVFDCDGRVFWCAGCGRRYASRSGLEAHSRSGVCGPPPPVPPGQDGVTRSCRGQELDAGLVMRSRTHTSTPTHTCGVCAHAFRTLSMLTEHVRVHSGERPYPCDICGVAFRRSTAMRNHRLIHSGVRAWACMRCPKRFRIRSDLRTHLRLKHPTKLYVIEVPGSNPTPEEVMECLTANDIPHEKVIEITKMTFPKNMTSVVPSGPRALAMLSHVPRTQVACSLASPEKPFDLQQHVSVARRGRGISKNPRKPKILQRGGNTQLTPITYSLNVPTSQDLSDLNMQLLLRDGVLVNGNQMVQLQLNDYNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -