Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000030.1:2385233-2389498[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.32 27 6.4 0.0 2 23 2 24 1 24 0.91

2 15 1.9 1.6e+02 4.0 0.1 2 23 98 120 97 120 0.94

3 15 1.6e-05 0.0013 19.9 0.3 1 23 124 147 124 147 0.97

4 15 0.016 1.3 10.5 2.2 3 23 179 200 177 200 0.95

5 15 0.0075 0.63 11.5 4.0 1 19 207 225 207 230 0.91

6 15 0.018 1.5 10.3 0.7 2 23 269 291 268 291 0.92

7 15 0.0072 0.6 11.6 0.0 2 23 426 448 425 448 0.93

8 15 0.0069 0.57 11.6 1.1 3 23 519 539 519 539 0.98

9 15 8.8e-05 0.0073 17.6 0.1 1 23 543 565 543 565 0.97

10 15 0.0061 0.51 11.8 0.1 2 20 573 591 572 593 0.94

11 15 0.015 1.3 10.5 0.5 1 23 600 623 600 623 0.89

12 15 0.0024 0.2 13.1 2.7 1 23 630 653 630 653 0.95

13 15 0.012 0.96 10.9 2.4 2 23 659 680 658 680 0.94

14 15 2.4e-05 0.002 19.4 0.2 1 20 686 705 686 708 0.94

15 15 0.0002 0.016 16.5 2.6 2 23 715 736 714 737 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.32	27	6.4	0.0	2	23	2	24	1	24	0.91
2	15	1.9	1.6e+02	4.0	0.1	2	23	98	120	97	120	0.94
3	15	1.6e-05	0.0013	19.9	0.3	1	23	124	147	124	147	0.97
4	15	0.016	1.3	10.5	2.2	3	23	179	200	177	200	0.95
5	15	0.0075	0.63	11.5	4.0	1	19	207	225	207	230	0.91
6	15	0.018	1.5	10.3	0.7	2	23	269	291	268	291	0.92
7	15	0.0072	0.6	11.6	0.0	2	23	426	448	425	448	0.93
8	15	0.0069	0.57	11.6	1.1	3	23	519	539	519	539	0.98
9	15	8.8e-05	0.0073	17.6	0.1	1	23	543	565	543	565	0.97
10	15	0.0061	0.51	11.8	0.1	2	20	573	591	572	593	0.94
11	15	0.015	1.3	10.5	0.5	1	23	600	623	600	623	0.89
12	15	0.0024	0.2	13.1	2.7	1	23	630	653	630	653	0.95
13	15	0.012	0.96	10.9	2.4	2	23	659	680	658	680	0.94
14	15	2.4e-05	0.002	19.4	0.2	1	20	686	705	686	708	0.94
15	15	0.0002	0.016	16.5	2.6	2	23	715	736	714	737	0.94

Sequence Information

Coding Sequence: ATGGTTTGCGTATATTGTCGCGACGGATACGAAGATCCCGCCGACTTTAGGCGGCATATGGACGAAGAACATCAAAAGTTTAATCCTGAAACGGTTTTCCACACATTTCAAAAAGGCTATATTAAAGCGGATTGCACTGATCTGCGTTGTCGTATCTGTAATAATAATGAACAATTCGAGAGTATAGATTGCATTGCTGAACATTTAGTAAGCGATCACAAGAACCTAAAAGTCTTAGACCTAAGCGAAGAAATAGCGCTGCAGCCGTTCGTCTTGTATAAGGATAAAATTGAATGCGTGATTTGCAGTCTAAAAGCGGTCTCAGTGCGAGCGATGAGCAGACATATGATGATGTCTCACTACACGAAATATACCTGTGAGACTTGCGGGAGGTCCTATGCTGAAAATGTCAATTTGATGAGACACGTGCAAAAGGAGCACTCTGGTGAACAAACAAAGTGTAGGAAATGTAAACAACCTATCGTAacacccaaggaacatatggaAGAATCCCCGGCTTGCATGCCGTACTGGTGTGTGAAATGCGGTGAACGGTTCCCTAGTAGTCATCACAAAAGGGAACATATGGTTCGAGTGCATGGGGCCGCAACCACAACTTATAAATGTCAGCATTGTCCAAAAGAATACAATTCGGCCACGTCTTTGAAAGATCATTGCATAAGTAACCATGGCTGGAAGCCAGTCCAACACCAGCTAGACGCAATAGGCCTCGCAAGACAGAACGCTGAGATACTCATCACGTACACGACAGCTTATCCGTTCAGGCTTCCACGAGAGGATATCGTCTGTGTTTATTGTTGCGAGAGCTTTGAGGACCCCTCTGCTTTCCGCCACCACATGGAAGCTGAACATCAGTCTTTCAGAGCTAAAAACGCTTTCGAACACCTGAAATACGAAGGCTACATTAAAGTAGATTGTACAGAACTTCGCTGCCGACTTTGTAGTATTAAGTGCGAAAGCTTAGAGTTATCCGCCAAGCATTTAGTGCAAGAACACGGGCAACCTATGGATCTCAATCATGAAATAGGTCTGCAACCCTTCGTCATGTTCAAGCATAAATTGGTTTGCGCGCTTTGTGATCACAAAGCATTATCTATTCGAAGCGAAGATTGTAGATCATCTGATAAGAGAAGGCAGCAAAATGACCGAAGCCTTTCTTTTGTTTTAGACAACGATGCACTGGCTCGGCACAACGCGCGCCTCATAATAGAAAACGCCACGGCTTACCCGTTCCGACTGCCCGAGAGCAAGGTCGTGTGCGTCTTCTGTTACGAAGCGTTCGAAGACCCAAGCCTCTTTCGACAACACATGGAAGAAGAGCATAAAAATTTCAAATCGAGCACAGCGTTCGTTCACATACATGAAGGCTATATAAAAGTCGATGTCACTGATCTTCGCTGTCGAATTTGCGAAACTCAAAAATCAAACCTCGATGAGATCGCTAACCACCTAAAAGGTTATCACGGCCTAACtattaattttggttttgaaCTCGGATTGCAACCGTTCGTGATAGAAAAGGACAGGTGGTGGTGTGCGATATGTACcgaaaaatttaataatttgcGTTCGCTCAGTCGACACACTGCTAAACATTTCTCGAGGTATACCTGTGAGACGTGCGGAAAGTCATATCCGACTGCTAGTGCTATCAAAGTACACGAACTGAGTCACCAAGACTTAACGCACAGAAAAGTTTGCAGACGATGTCGAAAAGGGTTCGACTCCGCTGAGCAGCTCCGTGTCCACATGGAGGAATCGAAGCGATGTTGCATGCACGTCTGCAATATATGCGGCGCAAGGTTCGCCACGTggatcttgaaacaaaatcacaaaaccGAAACGCACGCCATACCAAAGAAAACCTACTCCTGTTCAGAGTGTGACAAGGTGTTCGATAACCCCGACTCTTGTAGGACTCACTTTAAGATATTCCATACTGACAACTACTTGCAATGCTCCTGTTGTGGCATGAAGTTCGTCACCGAGTACAGATTGAGGCGTCATATGGTCTCCCACACTGGCGAGAAGGATTTCACGTGTCCTGTTTGCACGAAAGCGTTCCCTAGAAAGTCTACTTTGGACCAGCACATGTGGATACACAGAGCTGTCAAGAAATGGCAGTGTCAGACTTGTGACAAACAGTTCAACCAGAGGGTCAGTTGGAAGACGCATATGAAAGCTCATCATCCGGATCAGTGCAATTTTTAG
Protein Sequence: MVCVYCRDGYEDPADFRRHMDEEHQKFNPETVFHTFQKGYIKADCTDLRCRICNNNEQFESIDCIAEHLVSDHKNLKVLDLSEEIALQPFVLYKDKIECVICSLKAVSVRAMSRHMMMSHYTKYTCETCGRSYAENVNLMRHVQKEHSGEQTKCRKCKQPIVTPKEHMEESPACMPYWCVKCGERFPSSHHKREHMVRVHGAATTTYKCQHCPKEYNSATSLKDHCISNHGWKPVQHQLDAIGLARQNAEILITYTTAYPFRLPREDIVCVYCCESFEDPSAFRHHMEAEHQSFRAKNAFEHLKYEGYIKVDCTELRCRLCSIKCESLELSAKHLVQEHGQPMDLNHEIGLQPFVMFKHKLVCALCDHKALSIRSEDCRSSDKRRQQNDRSLSFVLDNDALARHNARLIIENATAYPFRLPESKVVCVFCYEAFEDPSLFRQHMEEEHKNFKSSTAFVHIHEGYIKVDVTDLRCRICETQKSNLDEIANHLKGYHGLTINFGFELGLQPFVIEKDRWWCAICTEKFNNLRSLSRHTAKHFSRYTCETCGKSYPTASAIKVHELSHQDLTHRKVCRRCRKGFDSAEQLRVHMEESKRCCMHVCNICGARFATWILKQNHKTETHAIPKKTYSCSECDKVFDNPDSCRTHFKIFHTDNYLQCSCCGMKFVTEYRLRRHMVSHTGEKDFTCPVCTKAFPRKSTLDQHMWIHRAVKKWQCQTCDKQFNQRVSWKTHMKAHHPDQCNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -