Klyc024236.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- znf711
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000025.1:2924487-2936467[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.012 0.99 10.9 3.6 1 23 255 278 255 278 0.94 2 15 0.00016 0.013 16.8 3.2 1 23 281 304 281 304 0.96 3 15 0.091 7.6 8.1 0.2 3 21 314 332 313 337 0.92 4 15 2 1.6e+02 3.9 0.2 2 23 354 376 353 376 0.94 5 15 1.2e-05 0.00097 20.4 5.2 1 23 382 404 382 405 0.95 6 15 0.0044 0.37 12.2 1.8 1 23 414 436 414 436 0.97 7 15 0.00029 0.024 16.0 1.1 1 23 442 465 442 465 0.97 8 15 2.3e-05 0.0019 19.4 0.9 1 23 515 538 515 538 0.98 9 15 0.12 10 7.7 4.5 3 23 544 565 543 565 0.96 10 15 0.44 37 5.9 0.8 2 23 572 594 571 594 0.95 11 15 0.23 19 6.8 0.8 2 20 599 617 598 619 0.92 12 15 0.085 7.1 8.2 0.1 1 23 625 648 625 648 0.95 13 15 0.00049 0.041 15.2 1.7 1 23 654 676 654 677 0.95 14 15 2.5e-05 0.002 19.3 2.3 1 23 686 708 686 708 0.97 15 15 0.0013 0.11 14.0 1.0 1 23 714 737 714 737 0.96
Sequence Information
- Coding Sequence
- atGGATATTCTGTGCTTTGCTTGCCTTAGTGCTGACAGAAAACTACACAAGTTACAGCAATACAAAGACGTTTTTATAGTTCTATGTAAAAACATAATCCAGGGCAAGAATCCTAAAATATCTCTATGTTTTGAATGTTTGGCGTTTCtcagaaatgttaaaaaattccAAACTAAAGTGCAGAAATCACAAAACATATTGAAGAGTTACAAACAGTATGGTGTTGAGaTCAATGTAATGAATAGTTTATCAACACTGTCCACATCACAAGCTGGTAAATTTGACTGTAGTAGCACAATAGGCGAAGACCTTAGTGATACAAAACCAGCCTTAGTTCTAGATataaaagaagaagaggaatATCATAATGAATTTGACTTCAATGATTTTAATTATCATGATGAACCTCTGATAGCAGCGAAAATTGATTACCCATCAGAAAGTTATTTAGATGGAACAATACTTGATACTAAAGTAATCATAAATGATAACGAAGGAAACAGTATTAAAAACGaaactatttttaaacatgAACATACAGAACCGAAAGTTGAAAAAGCCTTAAATGGACAAATAACAGAAAATGATAAGAATGACTTTGAAAGTGACTCCTTTTTCTTGTCGTCTagcaaaaaagttataaaaaaggaaaaacaCAAATCTAGAAGAATCAACCTTCATAAAGATAAGTCGAAAGCTATTAGACATTTAGGAAACTCAGAATCAAACACATACAAGCGGGAATTCAAGGTGAATGATGCATTTATTTGTGACTACTGCAACAAAAAGTGCAGGACTCGTCGTATGATAGAAAATCACATATTTGTTTTCCACACACGTCATCCATGTACGAAATGCTCAGTCGTGTGCAACACCCCGTACAACCTACGGAAGCACATCAAACGCGCGCACACCGTGTCGCGCACGGAGGCCGCCTACTGCGTCAAGTGCGACCGCCAGTTTGACAACGTGCCACAATTCCGGTCGCATCTACAGAATGCACTTGCTCACAGAGACGAGAGGAAGAGAAACGAGCGGCCCCCCAACGCGCGGCCGGTGCAATGCCTGGCGTGCCCCAACATTTACGCGAAGCGGTACTCCATGATGAACCACTACAATAAGGTGCACGTCGGCAAGACCCGTTACCACTGTGCTGATTGCGATAAGaTGTTTACGAATAATACGAATCTGCAATACCATATCAAGTACCACCACGAGGCGCGCGTCAAAGAGAGAAAGCACATGTGCACTATTTGTGGGCGAGGATTTACTGAAAAAAGGATAATGGAGAACCACACGCGCACGCACACAGGCGAGCGGCCTTACGAGTGTCCGCATTGCGACTCCAGGTTCGCGCAGAAGACCGCCATGATGACGCACGTCAAAAAGATACACGTGAAGGGCAAGACACCAGATGTATTCCTATGTTTCGAATGTTTGGCATTGCTCAGAAATGTTAAGAAATTCAAGGAGAAAGTGCAGACATCACAGAATACATTAAAAAGCATCAAACAAGACGAGGGTGAGGCTGACAAGATTCATTACACCTGTGAATACTGCACTTTACCTTTTAAAAGTAAAGTCCTACTCAAAAGCCACATAAACAGTAGCCACAGATACTTAAGATGCTGTAACATCTGCGGATATAAGTGTATTAGTAAGACTCAAATATACAAACACGTTAATAAAGAGCATTCTTCTATGAGGGCAGTGCAGTGTCTCGAATGTAATGCGAAATTCAAGAGCACCCCAATTTTCTACAGACACTACCGCAAAGAACATTTAGTGATACTAATTTGCGACTACTGCAATAAAAAATGTGATGGCCGTCGCGCGATGGAAAATCACATATTCAAACCTGAGAAAGAGACTTACCTATGTCCCGCGTGTCCGAACGTGTACGCGAAGGCTTATTCGATGAAGAACCATTACAACAAAGTGCATGCCAAAAAGGCGCGGTATAATTGCGCAGACTGCGATAAGATATTTCTTAACAATTCCAAACTCAGGGACCATATACAATACCACCACGAAGGCAAGGAGAGGGAGAGAAATCACATTTGCACCATTTGTGAACGAAGATTTACTCAAAAGCAAGTGCTGGTAAAGCACATACGCACGCACACAGGCGAGCGCCCGTTCGAATGTCCGCATTGCGACTCCAAGTTCGCACAGAAAACCGCCATGCTGACGCACGTCAAAAACATACACGTGAAGAGGGAACTCAAAATGCAAAGCCAAAGctaa
- Protein Sequence
- MDILCFACLSADRKLHKLQQYKDVFIVLCKNIIQGKNPKISLCFECLAFLRNVKKFQTKVQKSQNILKSYKQYGVEINVMNSLSTLSTSQAGKFDCSSTIGEDLSDTKPALVLDIKEEEEYHNEFDFNDFNYHDEPLIAAKIDYPSESYLDGTILDTKVIINDNEGNSIKNETIFKHEHTEPKVEKALNGQITENDKNDFESDSFFLSSSKKVIKKEKHKSRRINLHKDKSKAIRHLGNSESNTYKREFKVNDAFICDYCNKKCRTRRMIENHIFVFHTRHPCTKCSVVCNTPYNLRKHIKRAHTVSRTEAAYCVKCDRQFDNVPQFRSHLQNALAHRDERKRNERPPNARPVQCLACPNIYAKRYSMMNHYNKVHVGKTRYHCADCDKMFTNNTNLQYHIKYHHEARVKERKHMCTICGRGFTEKRIMENHTRTHTGERPYECPHCDSRFAQKTAMMTHVKKIHVKGKTPDVFLCFECLALLRNVKKFKEKVQTSQNTLKSIKQDEGEADKIHYTCEYCTLPFKSKVLLKSHINSSHRYLRCCNICGYKCISKTQIYKHVNKEHSSMRAVQCLECNAKFKSTPIFYRHYRKEHLVILICDYCNKKCDGRRAMENHIFKPEKETYLCPACPNVYAKAYSMKNHYNKVHAKKARYNCADCDKIFLNNSKLRDHIQYHHEGKERERNHICTICERRFTQKQVLVKHIRTHTGERPFECPHCDSKFAQKTAMLTHVKNIHVKRELKMQSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -