Klyc001326.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- L
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000001.1:10994158-11000722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.81 67 5.1 5.8 1 23 3 25 3 25 0.97 2 16 1.1e-05 0.00091 20.4 4.1 1 23 31 53 31 53 0.99 3 16 3.4e-05 0.0028 18.9 0.1 1 23 59 81 59 81 0.98 4 16 3.8e-05 0.0032 18.7 0.1 2 23 96 118 95 118 0.95 5 16 3.6 3e+02 3.1 0.2 3 23 142 164 140 164 0.79 6 16 0.39 32 6.1 0.0 3 23 225 245 224 245 0.97 7 16 0.18 15 7.2 0.0 2 23 259 280 258 280 0.91 8 16 0.0011 0.089 14.2 0.3 1 23 288 311 288 311 0.94 9 16 0.042 3.5 9.2 0.1 1 23 316 339 316 339 0.92 10 16 0.0028 0.23 12.9 0.4 1 23 393 417 393 418 0.96 11 16 0.00026 0.021 16.1 0.1 2 23 475 496 474 496 0.96 12 16 0.075 6.2 8.4 0.0 1 23 504 526 504 526 0.97 13 16 4 3.3e+02 2.9 0.6 2 23 534 555 533 556 0.92 14 16 0.22 18 6.9 0.3 1 23 769 791 769 791 0.94 15 16 0.0045 0.37 12.2 0.1 1 20 799 818 799 821 0.95 16 16 0.13 11 7.6 0.3 1 23 828 850 828 850 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTCAGATGCGAGTTCTGTTCGCGGCTGTTCAAGCACAAGCGGTCCCGCGACCGCCACGTGAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCGCACTGCGAGTCAGCCTTCTCCAGGAGCGATCACTTGAAGATCCACATGAAGACTCACGACAATCAGAAGCCGTTCCAGTGTACGGTGTGCAACCGTGGCTACAATACTGCGGCTGCTCTGACGTCACACATGCAGGGCCACAAGCGGGACCGGGACCGCGACCCGGACCGACGACGCGCGCTCAGGTGTCTCCGCTGCGGGGAAGGCTTCAGGAGACCTGACTTGCTGCAGGCGCACATGGTCACAGCTCACGGTGTAGACACAGCTTCATTGACACCTCCAAGACGCATAGCCTCGCAACCGCCGGCGACTCTCCTCGCCTGCATGTACTGCACTCGAGACACCTTCACGAGTATGGAGCAACTGCAACTTCACGTTAGAGCCGCACACTCGGCATTGTTAAATGGGGAAGCTCCGCCGACGGTCGATCAGCCGCTACCGACAGATCTCAGTCGGAGAGGCGCTGAAGAAATAAAGCGGTCAGCTTCAGCCAATGAGAGTCCTTCGATCAAGCGTTGTCGGTCGGGTTCAGGAACGCCGCAAACAGCCCTCTCTCCGAGCACCCTACTTTGTAATCAGTGTGATGCTGCCTTACCCGACTTTGAAGCTTTCCGAGCCCATTTAAAAGGTCACTTGGAAGAAGGAGGTGAATTGGGAAGCTCGAGCCCAGTGCCGTGTCTGCACTGCGGTGCCACGTTCGCGGACGCAGCGGCTTCCGAGCGTCACCTGACTGCGCACTACCTGGCGATGTCTTGTGAATACACCTGCCACAGCTGCGCGCGCAGTTTCCCGGCTCCTGACGATTTGCAGAAACACTTGCTGGATCTACATGCTCATCATTTGTACCGGTGCTCTCTTTGCAAAGAGATATTCGATTCTAAAGTGGCTATTCAGGTACACTTTGCTGTGGCTCATAGCGGGGAAAGTAAAGTGTGGATGTGCCGAGGCTGCGGCGCTAGTGGAGGAGCCATGCGTTCAGAAGCTGAAGGTGCAGCTCACGTGCTATCGAGACACGCCGCCCGCTGCACTTGTGGCGCTGTCATATCGGGTCCTAGGGCCCGTTCACACCGCGCGTATAGGTGCCCAGTGCCGACCTGCACCGACACGTTTGCTGTGCAATATCTGCTGGAGCGACATATGCAAGCGCACCATGCCATGCCGCAACCGGTCATAAATGGTGACATAAGCAGGACAAAACGTTCCGAGAACAACAATACAAGTGAGGGTCCCGACGGTGCCTGTTCTCCTTGCAACACTGTGCCTGATAACGGCCCGATTCCTACTGAAGATCGTCGTCGTAAGAACGGGGCTGTGGCCTTGCAATGCGCTTACTGCGGGGAACGGACCAGGAGTCGTGCAGAATTGGAGGCTCACACTCGAGCACATTCAGggtcggcggcggcgcggcacaAGTGCCTCATCTGTGACGAGGTGCTGCCTTCAGCTGCTGTACTGGCTGAACACAAGCTCACGCATTGTAAGGTGGTAGCCGGCGACACGTGCGCCCGTTGCCGCGCGAGGATCCCCAACGAGGAGTCGTTTTTGAGCCACATGGCGCGCCACCACCCCGCGCTGCCAGCCCCCTGCGTCGTGTGCCGGCAGACCCTCGCCTCGGAGCCCGAGGCTCGCCTGCACGCCAGCCCGAGGCTCGCCTGCACGCCAGGTGAGCGTCACAACCAGGAGTCCTTCCTGAGCTACATTGCGCGCCACCAGCCCCCTGCGTCGTGTGCCGGCAGACCCTCGCCCTGGAGCCGGAGGCTCGCCTGCACGCCAAGTGAGCGTCACAACCAGGAATCCTTCCTGAGCCACATGGCGCGCCACCAGCCCCCTGCGTCGTGTGCCGGCAGACCCTCGCCTCGGAGCCCGAGGCTCGCCTGCACGCCAGGTGAGCGTCACAACCAGGAGTCCTTCCTGAGCTACATTGCGCGCCACCAGCCCCCTGCGTCGTGTGCCGGCAGACCCACGCCTCGGAGCCCGAGGCTCGCCTGCACGCCAGGTGAGCATCACAACCAGGAGTCGTTGCTGAGCCGAACCCTACTTACTACAGATAAGGCGACGTTCCACCTGCGCGTGACTGAGGACGAGCAACGCTGCGCGATTTGCTTGCGAGCGCTGCCGGTGGGGGGCGTGGGGGAGGGCGCTCGCGCTTGCGCCGCTTGCTACGCTCGCCACGCGGCCCCCAGGGCGCCTGCGCACGGCGACCACGACTGCAGACTGTGTCGGCGCGCGCTCGGCTCCCCTACTACACTGCAGGCGCATCTCATCGAGCACACGTTCGCAGGTATCGGCGCATTCACCTGTTACCTGTGCTCCGCAGTGTTCACTAGCGCCGCCGGCCTGCAGCGCCACTTACCGGAGCACGCCTCCGCCCCAAGGCCTTACGACTGCGGCCGGTGCGGCCTCAAGTTCTTCTTCAGAGCCGAACTGGATAACCACGCCTTCGTCCATCTAGAGGAAGCAGAGATCGCGCAAAGAGCGTTCTATGAGGCCTACGCTAGAGGCGCCGCGTCCGCCTGGGCTGCCCTAGCCCCGCCTGAACCGCCGCAAGTAACCACTCCTACCACAATCGAAATTCCAGTCAAACAAGAAATAGAAATCAAGGAGGAGAAGACTGAGGAGTATATAGAGGTGTCGTCTCCTCCTCCTCCCGCTCCTGCCTCCCCGCCCGCGGCCCCCTCCCCGCCGCCCGTCGTCAAGCAAGAGAAACCGGATGAAGACTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDRDPDRRRALRCLRCGEGFRRPDLLQAHMVTAHGVDTASLTPPRRIASQPPATLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEAPPTVDQPLPTDLSRRGAEEIKRSASANESPSIKRCRSGSGTPQTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGSSSPVPCLHCGATFADAAASERHLTAHYLAMSCEYTCHSCARSFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWMCRGCGASGGAMRSEAEGAAHVLSRHAARCTCGAVISGPRARSHRAYRCPVPTCTDTFAVQYLLERHMQAHHAMPQPVINGDISRTKRSENNNTSEGPDGACSPCNTVPDNGPIPTEDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGSAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARIPNEESFLSHMARHHPALPAPCVVCRQTLASEPEARLHASPRLACTPGERHNQESFLSYIARHQPPASCAGRPSPWSRRLACTPSERHNQESFLSHMARHQPPASCAGRPSPRSPRLACTPGERHNQESFLSYIARHQPPASCAGRPTPRSPRLACTPGEHHNQESLLSRTLLTTDKATFHLRVTEDEQRCAICLRALPVGGVGEGARACAACYARHAAPRAPAHGDHDCRLCRRALGSPTTLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPPQVTTPTTIEIPVKQEIEIKEEKTEEYIEVSSPPPPAPASPPAAPSPPPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- -
- 80% Identity
- -