Klyc024164.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- Znf711
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000025.1:1954399-1973896[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00033 0.028 15.8 3.0 1 23 303 325 303 325 0.98 2 11 0.0043 0.36 12.3 1.4 1 23 332 354 332 354 0.97 3 11 0.15 13 7.4 0.4 1 23 358 381 358 381 0.96 4 11 0.1 8.6 7.9 7.1 1 23 388 410 388 411 0.96 5 11 2.2e-06 0.00018 22.6 0.2 2 23 417 438 417 438 0.97 6 11 8.5e-05 0.0071 17.6 4.7 1 23 444 466 444 466 0.98 7 11 0.00086 0.071 14.5 3.2 1 22 472 493 472 497 0.92 8 11 0.00057 0.048 15.0 3.2 1 23 505 527 505 528 0.94 9 11 0.00012 0.0099 17.2 0.1 1 23 534 557 534 557 0.97 10 11 1.1e-05 0.0009 20.5 2.2 1 23 566 588 566 588 0.98 11 11 0.00014 0.012 16.9 0.2 1 23 594 617 594 617 0.96
Sequence Information
- Coding Sequence
- ATGGATAATTATGTGTTCCCAAATACCAGTGACGTAAAACCAGACGTCGAGCCGTCTACGACAATTTGCCGGTCCTGTTTATCGACGGGAAAACGCTCTTTCAATGTCCTCCAATTCAAGGCATATTTCCTGGATTTAGCTGGCATAAATGTGTCTGAGTCGGACGGTCTACCGCAATGGCTGTGCCTGGAGTGCGCCGCCGTTCTACAGAAAGCTGTCAAGTTCAAATACAAGATGATAAAGGCAAACAACTTGTTGTACGATTACTCCAGCCGATGTGCCCCTTTCCCCATAGATGCCCAAGACCAGGAACTCTCCAAGTATGCGAGCCCACTGCTGGCCACCACTCACACACTCTGCTTTGATAATGCTAAGGGGAGGATGGGCTACCATAAAACATTGGAGCATGTGAAGGAGCTATATAGATCAGAACTCGACACTATAGTGGATGTACCGTTGGAAATGCCCACGTCCGGCAAACATGAGTACAGTAGCAATTCGTTTGACAATGTCAAAGAGGAGGGTGGATTCTCGGACTACGAGGACAATATTACACTTGAGGAATATAGATCAAATGTAACGAAATTGACAGAAGAAGATATAATCACAGAGGATGATCTAGCGAAACTTCTAGAAGTAAGCGAAGATATGCAGAAGGAGGAGAAGGAGACGGATGTCAGGAAGAAGAAGAGTAAGAGAGAGGAGAAGAACAGAGATGGGGTCAAGAAGAAAAAGAACAGCGAAAAACTACCAAAAGTGGACACGACAGAACTAATAGAACCAAAATGCTCGTTACGGAGCAAACCCGCGGAGCTCGACCCTAGCAAGATAAGGGTCGTCATGTTGGACCCTGAGGAACAAGTCAAACAGAGagaggaGGAGAGCAAGGCGAGTATGAAGTTCCCGTTCCAGTGCCATCTGTGCTTCAAAGGGTTCAACTTCGAGGCCAAACTGCAGAACCACATGGCCAAACACAAACCGTCGCGCGGTCAGTTCGAGTGCAAGCTGTGTTCCATGTATTTCCCCACGCAGTACAGCTACACcgtgcacacatacatacacacacgacGATATGAATGTGTCAAATGCGGCCGACGTATGATAGACCGATATTCCATACTGGACCATTACAAaatACAACACGAAGGATTAGTGACTATGTATAcgtgccatctgtgcggaaaagTTTCCAATAACAACAAAACGCACAGAGGTCACATGCGGAACCACCACTCGGGCGAGCGGCCATCTTGCGACCAGTGCGGCAAGAGCTTCATCAACAAGGACTCCCTAGCTGAACACATACAAATCCATCAAGGCATAAAGAACTACTCCTGCGGCACTTGCGGCAAACGGTTCCGAACTAGGACTCAGATCAAACATCATCAGCTCAAACACAGCGACGCGAGGGACCACTACTGCGTCGAGTGTGATACTAGGTTTAAATCAGCGCACAGCTTGCGGCAACATCTGCAGAAGAGCGTCAAGCACAAAGACAAGCACAGTATGAAgtTCGCGTGTGACAGGTGTGACAAGCGTTTCGACACGCAGGCGAGGCTGCAGCACCACGTGTCCATACACCACGAGGGCATACGACCGCACAGATGCGAAGTATGCGGCGCGACTTTAGCAACCCCGGGGTCCCTGAACAAACACTTACAGTCGGTGCACGGCGGGCGAAGACCGGCGCCCAAACATGTATGCCACCAGTGCGGGAAGGCGTTCAGAGGCAAGAGCGTGCTAGTGAACCACGTGCGCACGCACACAGGCGAGAAGCCGTTCGAGTGCGCGGAGTGCGGACGCAAGTTCGCGCAGCGCACCGCGATGCGGACGCACGTCAAACTGGTGCATCTCAAGTTCCGGAGAAGCGCCAAGATCAAACCAGAAATCCTGATGGAGCCCTCTGAGCCGGCCAACGCTGTCAAGATCGACCTGTTCCCCAAACAGGAGCCCGCTCTGCCCTTCGACACGTGGCGCCCTCTGCAAGGAGAAGTCTACTTCACTATACAACCTTAA
- Protein Sequence
- MDNYVFPNTSDVKPDVEPSTTICRSCLSTGKRSFNVLQFKAYFLDLAGINVSESDGLPQWLCLECAAVLQKAVKFKYKMIKANNLLYDYSSRCAPFPIDAQDQELSKYASPLLATTHTLCFDNAKGRMGYHKTLEHVKELYRSELDTIVDVPLEMPTSGKHEYSSNSFDNVKEEGGFSDYEDNITLEEYRSNVTKLTEEDIITEDDLAKLLEVSEDMQKEEKETDVRKKKSKREEKNRDGVKKKKNSEKLPKVDTTELIEPKCSLRSKPAELDPSKIRVVMLDPEEQVKQREEESKASMKFPFQCHLCFKGFNFEAKLQNHMAKHKPSRGQFECKLCSMYFPTQYSYTVHTYIHTRRYECVKCGRRMIDRYSILDHYKIQHEGLVTMYTCHLCGKVSNNNKTHRGHMRNHHSGERPSCDQCGKSFINKDSLAEHIQIHQGIKNYSCGTCGKRFRTRTQIKHHQLKHSDARDHYCVECDTRFKSAHSLRQHLQKSVKHKDKHSMKFACDRCDKRFDTQARLQHHVSIHHEGIRPHRCEVCGATLATPGSLNKHLQSVHGGRRPAPKHVCHQCGKAFRGKSVLVNHVRTHTGEKPFECAECGRKFAQRTAMRTHVKLVHLKFRRSAKIKPEILMEPSEPANAVKIDLFPKQEPALPFDTWRPLQGEVYFTIQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -