Klyc026309.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- rst2
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000030.1:734815-757402[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.16 13 7.4 0.0 3 23 122 142 120 142 0.96 2 15 0.0029 0.24 12.8 2.7 1 23 256 278 256 278 0.98 3 15 6.4e-05 0.0053 18.0 0.3 1 23 284 307 284 307 0.96 4 15 0.29 24 6.5 3.9 1 23 312 335 312 335 0.93 5 15 0.0044 0.37 12.2 1.6 2 23 515 536 514 536 0.98 6 15 5.3e-05 0.0044 18.3 2.4 1 23 542 564 542 564 0.98 7 15 0.62 52 5.5 4.0 3 23 635 655 633 655 0.92 8 15 0.88 73 5.0 0.1 2 23 663 684 662 684 0.95 9 15 0.0021 0.18 13.2 2.6 1 23 690 712 690 712 0.96 10 15 0.00078 0.065 14.6 2.0 1 23 722 744 722 744 0.97 11 15 0.013 1.1 10.8 4.5 1 23 753 775 753 775 0.98 12 15 0.00019 0.016 16.5 0.9 2 23 824 845 824 845 0.97 13 15 0.015 1.2 10.6 4.3 1 23 862 884 862 884 0.95 14 15 3.2e-06 0.00026 22.1 0.7 1 23 890 912 890 912 0.98 15 15 6.7e-07 5.6e-05 24.3 3.1 1 23 918 941 918 941 0.98
Sequence Information
- Coding Sequence
- ATGACAAACGGATACCAATATCACGTAAAACTTGAACATGCCAACCAAAACATACCCAACATCCCAAACGTACCTAACATACCACCACCATATATGGGAACATACCCTGCACCATACCAGAATTATGAGAAACCTACCGTTGAACCGGAAAAAAGCTTAACAGATACTCAATTACTGCCAAGTCTGCCTTTCGAGACAAATGAAACGGAACCGGTAGAAAATCAAAACGTCGAAGAAGAAATCGACACCAAAGAGAATATCAAGCTGCTACCGCAACACAGAAAGCGAGttccaaagaaaaaaggcaaaactTCCAACTAttggaataaaaaaattgaagatAAAAACTTTCCATTCTACGGTTGCACCATATGCAACGTGAGCTACTCTTCTATACAAGAACTAGACGAACACGTGACGATTCATGAAGGAAGAATCACCAGTTACGATTTAAGAGTGCGGAATAAAATCAAACGGAAAGAGAAGATAAAACAACTTAAGAAGATAAAGAAATTAGGGAAATTGTTGAAGAAAGAGAAAGGTGGAAACAGAAAGAAGCCGGATATCAATTTGGAGGTTGAAATTAAACCCGAAGAAGGTTATATAGGAAAGGAAAAAGCCACAGAGTACACACAAAACACAGAGACCAACCAAGACACACCGGTCAAACAAAACACAACCGATGGGAACAAAGACAAGTCCGATGTGAAAACCAAAGGGAATAAGAAAGTGATTGAACCGGACGATCCGAGGTTGCTGAAGCTGTTCAAATGTTTTGCGTGTCAGAAACAGTTCTCGTTGAGCTATTATCTGCGGTTGCATGTGAGGTCGCATACAGATGAAAAACCCTACACGTGCGCGGAGTGCGGGCAGTCCTTCATCACTGCGAGCAAATTGGGGAGGCATAATAAGAGGATACATCTCGCCATAAGGTTCCAGTGCAGAATCTGCTATAGATTCTTTTCAAggtttGACATTTTAACCAAACATTTTGACAAGAAACATGCAGCGGATAAAATCGAAGGAGAACCTTACGatTTCAACGCTATCCTGCCATACCTAAAGGAGTTAGAGGAACAACTAAAAGAACAGTCCGAATCGAAACAAGAACCACTCAAAACCGAAAACCCCTGGGATGAAACACAGAATataaaaaccataaaaaaagATGACGAATGTAATGTAAAAGAAGGAAAAGCCGATCTGGAGTTTGGTGATACGAAAGCTGATTTGTATGATGATACGAAGGAGAATATTACGAATGAAATATGTTCAGTCACCGTCGTAGATAGTGATCCAATCATAAAAGAGGACAGAAATGACTTCAGTCTGCTGGTGGAGGACGTCAAAGTGGAGCCCTTTCCTGATGACGGAGATGACCATCGCGATGAGGATTATAGACCAGACAGTTGTTCAGACGACGACTACTTCCCATCCAACACGTGGGCGTCGTCGCCAGCGGAGCCCCCTCCGGCGTCCCCGGAGCGCCCGAAGCGGGGCCGGGGGGGCTCCCGGGGGAAGGATAAGAATAAATTCCCAATGCAGTGTGAATTGTGTGAGAAAATTATTAACTCGCACAGTTATTATAAGGTCCACTTGCGCACGCACAACGGCGAGCGTCCGTTCAAATGCTACATCTGCGGGCGCGGCTTCATCACCTCCAGCAAGATGCACCGACACGTGCTCACACACCCCGAATACAGAGACGGAGAAGAAGAGGCGAAAGGTGAGAATGAAGAAGAAATTGTGAAAGAAGAAGGTGGAGAAAATGAAGAAGTCaaacaagaagaagaaaacgGCAAAACTAAGAAGAAGAGGAAAAGCAAAAAAGACAAaacgacagctgtcaaactggCAAAAGAGAAGAAAGGCTACAAGAAGTACAGGAAACGACCGCACGCCTGCATCTACTGCAACAAGAGATTCCTGCATCTCGACACGCTGGAAGTGCACAAGAAAACGCACGACGGTCAAGTGGTCGTCTTAAAATGCAACTATTGCCTGGAAGAAATGGCCGACGAAGAAACGCTCAAAACTCATGAGGCGACTCACGAAGGCCCCAGACCGTATCTATGTACCGTCTGTAATAGGACATACACTAAGAAGGAAACTATGATATATCATCGCAAAACGCACTTAGAGGGCGGCACTAAGACCAGCGAGTACATTTGCGACGTTTGCTCCAAAAGTTTCAACGCACAGTGCAAGCTACAGCGGCACCTGGTATCACACAACACAGAAAAGTTTATTCTCCGTTACGAATGTCCCGTCTGCGCGCACATGTTCCACACGAAATATCACGTCAAGATGCATCTCGCGACGCATCAGAAGGAGGGgttaattCTAGAAGAGAACCGGAACGAGATTCTAGCGATGGTCCTCCAGAATGCTCGCAAGTTCCCGAAAAAAGACGACACCAACGTCAACTCCCTACCCGCCTTAATAACAGCCGACGACGAGCGAAGCCGCGTGTGCAACATATGCGGACAGGTATTCCAACACTTCTATTACCTAGAAGAACACCTCAAAAGCCACGGCTCCCTCATAGCAATCGAAGACGAAAACAAAACGGAAGAAAACAAACATATATGCCCCGTCTGCAACAAGGGGTTCAAACTACACTACTATTTGAAACTACACAGCTTCACTCACTCAAAAGAGCGCCCCTTCATATGCCAGCAGTGCGGAAAAGGGTTCATTACCAGGGGGAAACTTAAGAGGCATCTTGAGACTCATACGGGATTGAAAAAATACCAATGTCATATATGCTATAAGTTCTTCACGAGGCCGAGCTATCTGAGGATTCATGTGAGGACGATTCACGGCACGCAAGATTATAATTTTAGCAGCCATTTTCATTCTGAGCATAGTGTGTAA
- Protein Sequence
- MTNGYQYHVKLEHANQNIPNIPNVPNIPPPYMGTYPAPYQNYEKPTVEPEKSLTDTQLLPSLPFETNETEPVENQNVEEEIDTKENIKLLPQHRKRVPKKKGKTSNYWNKKIEDKNFPFYGCTICNVSYSSIQELDEHVTIHEGRITSYDLRVRNKIKRKEKIKQLKKIKKLGKLLKKEKGGNRKKPDINLEVEIKPEEGYIGKEKATEYTQNTETNQDTPVKQNTTDGNKDKSDVKTKGNKKVIEPDDPRLLKLFKCFACQKQFSLSYYLRLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRIHLAIRFQCRICYRFFSRFDILTKHFDKKHAADKIEGEPYDFNAILPYLKELEEQLKEQSESKQEPLKTENPWDETQNIKTIKKDDECNVKEGKADLEFGDTKADLYDDTKENITNEICSVTVVDSDPIIKEDRNDFSLLVEDVKVEPFPDDGDDHRDEDYRPDSCSDDDYFPSNTWASSPAEPPPASPERPKRGRGGSRGKDKNKFPMQCELCEKIINSHSYYKVHLRTHNGERPFKCYICGRGFITSSKMHRHVLTHPEYRDGEEEAKGENEEEIVKEEGGENEEVKQEEENGKTKKKRKSKKDKTTAVKLAKEKKGYKKYRKRPHACIYCNKRFLHLDTLEVHKKTHDGQVVVLKCNYCLEEMADEETLKTHEATHEGPRPYLCTVCNRTYTKKETMIYHRKTHLEGGTKTSEYICDVCSKSFNAQCKLQRHLVSHNTEKFILRYECPVCAHMFHTKYHVKMHLATHQKEGLILEENRNEILAMVLQNARKFPKKDDTNVNSLPALITADDERSRVCNICGQVFQHFYYLEEHLKSHGSLIAIEDENKTEENKHICPVCNKGFKLHYYLKLHSFTHSKERPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFSSHFHSEHSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -