Klyc018447.2
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000016.1:9001738-9023299[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.27 22 6.6 0.1 3 21 8 27 6 28 0.86 2 13 1 84 4.8 0.0 2 20 34 52 33 54 0.92 3 13 0.26 22 6.7 0.2 1 12 222 233 222 236 0.93 4 13 8.5e-05 0.0071 17.6 1.7 1 23 406 428 406 428 0.98 5 13 1.2e-05 0.001 20.3 0.8 1 23 443 465 443 465 0.98 6 13 6.8e-05 0.0057 17.9 0.4 2 23 518 539 517 539 0.96 7 13 6.8e-05 0.0057 17.9 0.4 2 23 552 573 551 573 0.96 8 13 0.0024 0.2 13.1 2.4 1 23 590 612 590 612 0.98 9 13 2e-06 0.00017 22.7 4.5 1 23 618 640 618 640 0.98 10 13 0.004 0.33 12.4 7.9 1 23 646 668 646 668 0.98 11 13 2.7e-06 0.00023 22.3 0.4 1 23 674 696 674 696 0.98 12 13 0.0019 0.16 13.4 0.4 1 23 700 722 700 722 0.98 13 13 0.00027 0.022 16.1 0.4 1 23 730 753 730 753 0.95
Sequence Information
- Coding Sequence
- ATGGGTGACACCGTTGTAAGGTGTCCTCTATGCTGCGACAGAACTTTTGATTCGAAGCCGGAACTTGTAGAACACTTGTCGATAATATTCGATAGTATAACCTGCCCGGTATGCAATACCAAGTGGGCTTCTGTCTCTCATCTCATTGATCACTTAACCTTAGATAATTGCCAAGCAGATGATGTAGTGCCAACTTTAAGTTTCGACATAAGTACCGAACCAGTAAATCACTCTAATGAAATTGTTAATAGTAGTCATACATTGGAAAACAACCAAATATTCATTGAAAATGATTCACAAGACAATCTAACCAATGCTCATCCCAACTCTATGAATACCATTGATGACGGGTCAGATACAGGGAAGATGTATGTAGAGTTTCTTAGCAAGCAGCTCGCAAAACCGTGCCTGCAAACTCAGGAGCTGAAGCTTGTAAAGGATGACGGAGGAGTCAGATATGTCTTTGTGAcgaatgatgatgatagcaCCAACCCTGGAATGGATCTCAACAATGCAGTGGTGACCAAACAGAACAATGATGGAACTATTTCATTGACTACCATACaagATATGAAAATGGAGTCAGTAGATCAGGACATTCAGGACCCTCTGATAAGCCAGGAGCAGGAGCCCCAAGGAGCGGCAGAGACGCGGGAGGAGATCTATAGCTGCAACACATGTGGAGTGTCATTTACGTCGGTGCTGGACCACATACAGAACTATCATAATGACCAGGATGTTGTGGTTGAAGAACCCATGGATGACATGGAAAACGGCACCAACGAGTACATCTCAGCGGATTTCCAAAGTCAAGCAGAGACCATTCTTCCAACCACCGAGGAGATGGTGAGGCAAGCTGGGCGCCGCATGATCACTGACACCGGGGACATTATTGAAGCACCCATGGTGTTGAAGTCATCTTCTATTTCCTTAGGTGCAGAGAAGCAAATGGTATCACATCCTCAGGTGAAGCAGGAGCTGGTTATAGACAACAAGGGTCCGCTGCAACCGCAGCCGCGACGCTACGTCGTCGTCGACAGCGTCGTCAAGGAGATCAAGAAACCTTCCGGGCAAGCGGGCCCGTACCACAAGGTGGTGATAAAAGAGATGACGCGGCCCAGCGGCGAGAAGGTGAAGATCTTCAACTGCATGTCCTGCCACATCTACGTCTCCTCACTCGAGGACTTCAAGTCCAGGCCTTGCCAAAACTTGAGGTATTCGTGCTCGCACTGTTCCGTGTCGTACGAGAACTCCAAATCCCTCTCCGCGCACATGAAGGTGCACAAAGCGAAACCACAGCTGGCGGTAGTGAAGACTCCCTCCCAGTTCGAGTGCGACCTGTGCAACACGGTGTTCCCCACCAACAAGTCGCTGAAACTACACACCAGGATGCACGATCCTATCAAGCGCCGCGAGATAGAGCCGCCCGTGGAAACCGCGGACGGCGAAGAGGTGTCCGGCGATAAGTTCCTCTGTTCTGTTTGCAACCGCCTCATTCCCATAGACTACCGCGCCGTACACCAGAAGTCACATAAGGGGGGCTCGGGGCTGAACTGCGCGATATGTAACAAGGAGTTCTACTCAAAAGAGTACCTCCAGATGCATATGACTGTACACATCAATGAAAAGTCACGTAAGGGGGGCTCGGGGCTCAACTGCGCAATATGTAACAAGGAGTTCTACTCAAAAGAGTACCTCCAGATGCATATGACTGTACACATCAACGAAAAGGCTTTAGAGAGTAAGAAGGACAGCAGGAGTTTGCCATACAGCTGTCTCTATTGCGAGCGTCAGTTCTCAAGACCGCACGAGAAAGTCAAACACGAGCGGATACACACAGGGGAGCGTCCTCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGCACGCACACCGGCGCGCGCCCCTACTCGTGCAAGCACTGCGGGAAGAGGTTCAAAGCGCACAGCGTGTACAACCACCACCTACTGACGCATTCTGAGGTGCGCGCGTATAAGTGCCCCTACTGCCCCAAGGCGTTCAAGACGTCCGTACAGCTGGCCGGGCACAAGAACTCGCACACCAAGCCCTTCTCGTGCCAGCAGTGTAATAGGCCTTTCGCATCTCTCTACGCGGTCCGCATGCACACAGAGACTCACGCGCGTCAGAACGGGCTCAAATTCTGTTGCACGTTATGCGGAGCGAGCTACGCGCGCGCCTTCGCCCTCAAAGACCACATGAAGGCGGCCCACGCTAAAGACGTCGAGAAGAATGAACTGGGTATCAACAGCAGGCTTTTGGCGGATAAGAAGGATGTAGATCCTGTCATCGTAACGAGCTACGCGCGCGCCTTGGCCCTCAAAGACCACATGAAGGCGGCCCACGCTAAAGTCGTCGAGAAGAATGAACTGGGTATCAACAGCAAGTTTTCCGTGGAGAAGAAAGATGCGGATCCTGTCATCACGACAATAGTGACGGAAGATTGGGAGGTTCAGGACGCCGTGGAGTCTCACGCCGACCTCACTGACGCCATCGCCAGCGATACGAAAACACTACATAATGATGTTGATATGCCCATGATAAATCCGAACTTCAACAACCAACTAGTAGTACCATAA
- Protein Sequence
- MGDTVVRCPLCCDRTFDSKPELVEHLSIIFDSITCPVCNTKWASVSHLIDHLTLDNCQADDVVPTLSFDISTEPVNHSNEIVNSSHTLENNQIFIENDSQDNLTNAHPNSMNTIDDGSDTGKMYVEFLSKQLAKPCLQTQELKLVKDDGGVRYVFVTNDDDSTNPGMDLNNAVVTKQNNDGTISLTTIQDMKMESVDQDIQDPLISQEQEPQGAAETREEIYSCNTCGVSFTSVLDHIQNYHNDQDVVVEEPMDDMENGTNEYISADFQSQAETILPTTEEMVRQAGRRMITDTGDIIEAPMVLKSSSISLGAEKQMVSHPQVKQELVIDNKGPLQPQPRRYVVVDSVVKEIKKPSGQAGPYHKVVIKEMTRPSGEKVKIFNCMSCHIYVSSLEDFKSRPCQNLRYSCSHCSVSYENSKSLSAHMKVHKAKPQLAVVKTPSQFECDLCNTVFPTNKSLKLHTRMHDPIKRREIEPPVETADGEEVSGDKFLCSVCNRLIPIDYRAVHQKSHKGGSGLNCAICNKEFYSKEYLQMHMTVHINEKSRKGGSGLNCAICNKEFYSKEYLQMHMTVHINEKALESKKDSRSLPYSCLYCERQFSRPHEKVKHERIHTGERPHSCEICGKSFRVSYCLTLHMRTHTGARPYSCKHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRMHTETHARQNGLKFCCTLCGASYARAFALKDHMKAAHAKDVEKNELGINSRLLADKKDVDPVIVTSYARALALKDHMKAAHAKVVEKNELGINSKFSVEKKDADPVITTIVTEDWEVQDAVESHADLTDAIASDTKTLHNDVDMPMINPNFNNQLVVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01501506;
- 90% Identity
- -
- 80% Identity
- -