Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000010.1:3865918-3870495[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.7e-07 4.8e-05 24.5 2.6 2 23 281 302 280 302 0.97

2 11 0.00049 0.041 15.3 7.6 1 23 308 331 308 331 0.97

3 11 8e-05 0.0066 17.7 0.1 1 23 340 362 340 362 0.98

4 11 0.00025 0.021 16.2 2.6 1 23 370 392 370 392 0.98

5 11 0.0005 0.041 15.2 2.8 1 23 398 420 398 420 0.99

6 11 0.0002 0.017 16.5 2.5 1 23 426 449 426 449 0.97

7 11 0.056 4.7 8.8 1.2 2 23 455 474 454 474 0.93

8 11 3.3e-07 2.7e-05 25.2 2.0 1 23 480 502 480 502 0.98

9 11 0.00029 0.024 16.0 1.8 1 23 508 530 508 530 0.98

10 11 8.9e-05 0.0074 17.6 3.1 1 23 536 559 536 559 0.97

11 11 0.0011 0.09 14.2 0.3 1 20 565 584 565 586 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.7e-07	4.8e-05	24.5	2.6	2	23	281	302	280	302	0.97
2	11	0.00049	0.041	15.3	7.6	1	23	308	331	308	331	0.97
3	11	8e-05	0.0066	17.7	0.1	1	23	340	362	340	362	0.98
4	11	0.00025	0.021	16.2	2.6	1	23	370	392	370	392	0.98
5	11	0.0005	0.041	15.2	2.8	1	23	398	420	398	420	0.99
6	11	0.0002	0.017	16.5	2.5	1	23	426	449	426	449	0.97
7	11	0.056	4.7	8.8	1.2	2	23	455	474	454	474	0.93
8	11	3.3e-07	2.7e-05	25.2	2.0	1	23	480	502	480	502	0.98
9	11	0.00029	0.024	16.0	1.8	1	23	508	530	508	530	0.98
10	11	8.9e-05	0.0074	17.6	3.1	1	23	536	559	536	559	0.97
11	11	0.0011	0.09	14.2	0.3	1	20	565	584	565	586	0.94

Sequence Information

Coding Sequence: ATGGCTAACGTAAAGAATAATAGTGGGAGGAGAGGACGTAAACCGAAATTACTGACCGGTGCTGGTGGTGTGGCAAAACATGTAAAAAACAGTAAGAACGGTCACAATCTCAGAAGTACCCCTTTCAATGATAATACTGATAATAAACCTGTTTTGTTAAATAAAGGTATAATCACTAGAAGCGGTCGGATAAGAAAGAAAAGCAAAGATAAACTTAAAGTCATGGATAATATACTGAAAAGTGAATTGATGATCGCTGATACCCGCAGCAAAAGGAAGAAGACACCGGACTCACCAACTAGCAACGGGAATAATAACAATGATATTGAAGTAAGCGACCAgaataatattgaaattaacGTCCCACTTATTCTGCCTCATCACACTGAAAGCAGTcccaaaaaaaataacaaaagaagtCCCAAAAATAATTCCACTTCGGACAACCAAAGCAACCTAGTTGGAAAGATAAGAGTGGCCAGAAACATATTTTCAGAATCTCAAAATGGGGTTGAAAAAGTTCCAAATGATTCTAACGATTATCTGTTGGGATCTAAAGAGAATGATCCTAAAATGACTATGGACCCCAATCTTAGAGATGATGTTTTAAGCAACATGAAAAGTGTTTTATCTCCAGATGATGAAATAATTCTACCAGAGAAAGAACCAAAGAAATATGCCAGGAAAAGGTCAAAACCAAATAGAAACCAAGTAAATAAttccaaagaaaataaaaaaaatgttaacaaaaataaagaaaaagttgAACCAACGCCTGACCCATCTAAAACCAAACAAGTTAGGCTGAGCAATGGAGTAGTTTTGACCTTGTCTTTAGTGCAATGTGACCATTGCCAGAAGTCTTTCAGCAACAAAGCATCACTAAGCAGACACATGCTGTCACACTTTGACTTGAGACGGCACCAGTGCAAACATTGCCCAAGGAAGTTCCGCTACCGAACCACTTTAAAACTTCACATACAACGGCGCCATCCTATTACAGAAAATGTAGAATTCTATGTCTGCCAAATCTGTGACAAGACTTTCCAACTTGAAGAAAACCTGGAATTGCATTTAGCGAGTCACATCAAATCTGAAACTAATAATTACAAGTGTCTGTACTGTGACAAAAAGTTCTCTTATCGCCTGTTATTGTTACAACATGAGAAATCTCACTTGGATACAGGCCGGTTCAAATGCTTCACTTGTGAAATGACTTATGACTCCCGCAGCAGGCTAACTCAGCATATCAAAACCCATTCAAAAGTCAAAGATTACATCTGCCAGTACTGTGGCAAAGAGTTCCAGAGACTGAATTCTATTAAGAGGCATGTAAGGGTGTGTCACGGTGGCCATACAATTAAGTGCCCTATTTGCTTCAAGGATTTAAAAGGTCATTTGACTGAGCACATGAGGGTGCATAATCAGAATCGCCCTCATGTTTGTCCTGACTGTGGCCAGCGTTTTACCCAGTCTACACAGTTGAAAGTCCACCGTCGATCGCACACTGGCGTCCGCCCGTACCCGTGTAGGATCTGCCACCGTCCTTTTGGACATTCCAATGCCCTGATGCTGCATGTCAGGAGGCACACTGGTGAAAAACCGTTCCCTTGTGCCATGTGCCATATGAGCTTCTCCCAGTTGCCTCACATGAAAAACCATATGAGAAAGATACACGGAAAAGACAGTGCATATAAGTGTCAGAAATGTGGGGAGTTCTTCAAGTTGAAAGCTGGATTGGAGAGTCATGCTAAAGACTGTACTGTGGGTGATAGAGTCTTGTCGTTTGAAGAACAAATCCAGGCTTCAGTGCAGATGGAAGAAGTCGAGATGGACTCGTCTATCAAGCTGTCCAAGATGCGTTTCCTCCTGGCTCTGCTCCTCACCATGATAGCATcaaaagaaaaactaaaatttctaGGTTTCAACAAGCGCCTGATAGACGATCTCCTCGTGGAGTCACTTGAGGCGATGGGTCATGCTCCTTGCAAGGACGAGGCCCTGAGTCCATACAAACGTCTGAAGACGAACGTGGAGATCCTACTCGGTGGTACCATCCCGAGCCACCAGATGGAGAAATTCAGGAGCGAAAATAAAAGCACGGAGGAACTGCTGGTTTTGCTGACTGATGAAAAGAAAATCGTGTAA
Protein Sequence: MANVKNNSGRRGRKPKLLTGAGGVAKHVKNSKNGHNLRSTPFNDNTDNKPVLLNKGIITRSGRIRKKSKDKLKVMDNILKSELMIADTRSKRKKTPDSPTSNGNNNNDIEVSDQNNIEINVPLILPHHTESSPKKNNKRSPKNNSTSDNQSNLVGKIRVARNIFSESQNGVEKVPNDSNDYLLGSKENDPKMTMDPNLRDDVLSNMKSVLSPDDEIILPEKEPKKYARKRSKPNRNQVNNSKENKKNVNKNKEKVEPTPDPSKTKQVRLSNGVVLTLSLVQCDHCQKSFSNKASLSRHMLSHFDLRRHQCKHCPRKFRYRTTLKLHIQRRHPITENVEFYVCQICDKTFQLEENLELHLASHIKSETNNYKCLYCDKKFSYRLLLLQHEKSHLDTGRFKCFTCEMTYDSRSRLTQHIKTHSKVKDYICQYCGKEFQRLNSIKRHVRVCHGGHTIKCPICFKDLKGHLTEHMRVHNQNRPHVCPDCGQRFTQSTQLKVHRRSHTGVRPYPCRICHRPFGHSNALMLHVRRHTGEKPFPCAMCHMSFSQLPHMKNHMRKIHGKDSAYKCQKCGEFFKLKAGLESHAKDCTVGDRVLSFEEQIQASVQMEEVEMDSSIKLSKMRFLLALLLTMIASKEKLKFLGFNKRLIDDLLVESLEAMGHAPCKDEALSPYKRLKTNVEILLGGTIPSHQMEKFRSENKSTEELLVLLTDEKKIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01501410; iTF_01337111; iTF_00178482;
90% Identity: iTF_01501410;
80% Identity: -