Klyc024237.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- Zfa
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000025.1:2937366-2956874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.1e-06 0.00034 21.8 2.4 1 23 103 125 103 125 0.98 2 19 6.1 5.1e+02 2.3 4.8 2 23 159 181 158 181 0.93 3 19 0.089 7.4 8.1 2.3 1 23 188 211 188 211 0.94 4 19 3.8e-05 0.0032 18.7 1.4 1 23 214 237 214 237 0.93 5 19 0.0025 0.21 13.0 0.7 2 22 246 266 245 270 0.93 6 19 0.046 3.9 9.0 0.4 2 23 302 324 301 324 0.95 7 19 7e-05 0.0058 17.9 3.2 1 23 330 353 330 353 0.96 8 19 1.5e-06 0.00013 23.1 0.4 3 23 364 384 363 384 0.98 9 19 0.0014 0.12 13.8 2.9 1 23 390 413 390 413 0.97 10 19 0.00015 0.013 16.8 0.4 1 23 575 597 575 597 0.98 11 19 3.7 3.1e+02 3.0 0.9 2 23 602 624 602 624 0.91 12 19 0.056 4.7 8.8 0.9 2 23 631 653 630 653 0.95 13 19 0.0077 0.64 11.5 3.3 1 23 660 683 660 683 0.93 14 19 0.053 4.4 8.8 1.1 1 23 686 709 686 709 0.93 15 19 0.082 6.8 8.2 0.2 2 21 718 737 717 738 0.93 16 19 0.019 1.6 10.2 0.7 2 23 758 780 757 780 0.95 17 19 0.0011 0.092 14.1 3.1 1 23 786 808 786 809 0.96 18 19 0.0015 0.12 13.7 1.9 1 23 818 840 818 840 0.98 19 19 0.00037 0.031 15.6 0.8 1 23 846 869 846 869 0.97
Sequence Information
- Coding Sequence
- ATGGCAGATGTGCCTACAATAGAAATACGGACTTCctgcacaaaatataaaaacgagaGGAAAATCATGGATACTCCATGTTATGCTTGTTTGAGTGCTGACCGAAATCTGTACAAGTTATTTCAGTATAAAGATGTTTTCAATGTAATATGTAAGAACATAGATCAGGACACAAATTCAGAAGTATTCCTATGTTTCGAATGTTTGGCACTGCtcagaaatgtaaaaaaattccAACTCAAAGTGCAGACAGCACAAAACTTATTGAAGAACTGTCCGGAAGCTGATGTAGAGTCCGACCTTAACTACACTTGTGATCACTGCACTTTATCATTTAGAACAAAGGGAAATTTAACAAACCACTTGGCTTCACACACGTATGTCCTATGTTGTAAATTCTGTGACTACAAGTGCATCAGTACAGTACATATGTACTCACATGTAAAAAAAGAGCATACAACTCCAAGAAAAGTGCAATGTCTCCAATGTAAAGACACTTTTAAGACTACACGATCATTCTACAAGCACTATCACAACAATCACTACAAACAGAACAAAACATTCATTTGCGATTACTGCAACAAAAAGTTTTTGCAATATCGCACCATAGAACAACATATGTTCAGAAACCACACTGCCCATCCTTGTCCAAAATGCCCAAAGATCTTCAATAGGCCGTCGTTTCTAAAACAACACTACGAGCTGCGACACTTGGTGTCTCGCACAGAAGCTTCCTATTGCGTGAAGTGCGACCGACAGTTCGATAACAAGGCGAAGTTCCAGTATCACATTAGAACCACAGTGGCGCACCGAGATGAGAGGTCACTTGCATCCACCGTCGCGCACAAAAGAAAAACGAAAACCTACGACCCatCGCACAAATCGCCAAGTAAACGGCCAGTCCAGTGCCTCGCGTGCCCGAAAGTGTACTCGAAGCTTCAATATATGAGGAATCATTACAACAAAATTCACCTAGGAAAGACCAATTACAACTGCAACATCTGCGATAAGATGTGTATCAACAACACATCACTGAAGAACCACATAAAATACTATCACGAGGGACGCGTAAAGGAAAAAAACAAGATTTGCTCGGTGTGTGGAAAAGGATTTACAGCGAAAAAGAACCTTGTAAATCACATGCGCACGCACACAGGCGAGCGGCCATTCGAGTGTCCGCATTGCAAGTCCAAGTTTACGCAGAAGACCGCCATGATGACGCACGTcaagaaaatacacaaaaagCAAAAAAAGTTACCAAATTTTTCGATTCTATCTACTACAACAACTTGTGTACTTGATTGTAGTAAACCAGTAGAATATAGAGTGGATTTGGACACTAAACCAAATGTAAATTTAAGTGATATAAAAATAGAGAAGAAAATCAATGATGAGGATGATTTAGATGCTTTTGATTATGGCGATGATGATGTGACTAATATCATTGATCCTCCAGATATTCATGATGATGCAACGCCATTTGTGACTCTGAAGAAAAGTAATTTTTATCAAGAAATCAATGAAGAAAAAGTATTAGAAAGTTTGGGAGATAAATATCATGAACTTATTATAAAAACTGAACTAGATGAGAATGCAGGAGCACAAAAAAATGAACCACTAGAAAAGAAACAAGTTAAAAAAGAGAGAggtttaaaaaaggaaaaaagccACCCAAAAAGGATACATAATAGAAACCTGTACAAAATTTCTCAAAAACTCCAGTACAGTTGTGACTACTGCACTTTATCGTTCGTAAATAAAGCCCGCCTGGTGAATCATATAAAAGCGCACAGCTACATACGAAGTTGTGATGTGTGTGAATATAAGTGTATCAGCGAGTTTCTCATGTACAAGCATGTGGAAAACGAGCATGGGATCACTAGGGCGGTGCAGTGTGTACAATGTCAATCTAATTTCAAgCGGGCGATAGATTTCTACAAGCATTATCGCGAATACCATTACGAGCTCGATAACACATTTATTTGCGATTACTGCAATAAAAAATGCAAGACTCGAGGCATGATTGAAAAACACATATTCAATAACCACACCCCGCACCCGTGTACGGAATGCTCGCTGTCATTCATGGAGCCGTGGCGGCTCACACGTCACTACTCGCTGAAACACAGCGTGTTGCGAACAGAAGCTACGTATTGCGTGAAATGCGACCGACAGTTTGACAACCTGCCACAGTTCCAGTACCACCTCAACGCTTCAGTGGCGCACCGGGACGAGAGGAAACCACTCAAATCGGCAAGTAAGCAGCCGGTGCAATGCCTGGCGTGTCCTAAAGTGTACTCAAAACGCTACACGATGATGAACCACTATAACAAGACCCATATTGGCAAGTCGAGGTACCAGTGCGCGCGCTGCAATAAGttatTTATAAACAATACAAAACTGAAGGAGCACATACAATACCACCACGAAGGGCAAGAGAGGGAGAGAAAACATGTCTGCAACTTTTGTAGACGGGGATTTACTGCAAAGACGGTCCTCGAAAACCACATACGCACGCACACGGGCGAAAGACCTTTCGAGTGTGCGCATTGCGACGCCAAGTTCACACAGAGAACCGCCCTAGTGATGCACGTCAAGAAGATACATGTGACAGCGTGA
- Protein Sequence
- MADVPTIEIRTSCTKYKNERKIMDTPCYACLSADRNLYKLFQYKDVFNVICKNIDQDTNSEVFLCFECLALLRNVKKFQLKVQTAQNLLKNCPEADVESDLNYTCDHCTLSFRTKGNLTNHLASHTYVLCCKFCDYKCISTVHMYSHVKKEHTTPRKVQCLQCKDTFKTTRSFYKHYHNNHYKQNKTFICDYCNKKFLQYRTIEQHMFRNHTAHPCPKCPKIFNRPSFLKQHYELRHLVSRTEASYCVKCDRQFDNKAKFQYHIRTTVAHRDERSLASTVAHKRKTKTYDPSHKSPSKRPVQCLACPKVYSKLQYMRNHYNKIHLGKTNYNCNICDKMCINNTSLKNHIKYYHEGRVKEKNKICSVCGKGFTAKKNLVNHMRTHTGERPFECPHCKSKFTQKTAMMTHVKKIHKKQKKLPNFSILSTTTTCVLDCSKPVEYRVDLDTKPNVNLSDIKIEKKINDEDDLDAFDYGDDDVTNIIDPPDIHDDATPFVTLKKSNFYQEINEEKVLESLGDKYHELIIKTELDENAGAQKNEPLEKKQVKKERGLKKEKSHPKRIHNRNLYKISQKLQYSCDYCTLSFVNKARLVNHIKAHSYIRSCDVCEYKCISEFLMYKHVENEHGITRAVQCVQCQSNFKRAIDFYKHYREYHYELDNTFICDYCNKKCKTRGMIEKHIFNNHTPHPCTECSLSFMEPWRLTRHYSLKHSVLRTEATYCVKCDRQFDNLPQFQYHLNASVAHRDERKPLKSASKQPVQCLACPKVYSKRYTMMNHYNKTHIGKSRYQCARCNKLFINNTKLKEHIQYHHEGQERERKHVCNFCRRGFTAKTVLENHIRTHTGERPFECAHCDAKFTQRTALVMHVKKIHVTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -