Klyc007003.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000004.1:20754489-20776747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0029 0.24 12.8 0.1 1 21 480 500 480 501 0.94 2 11 0.00012 0.0099 17.2 4.6 1 23 521 543 521 543 0.97 3 11 0.00016 0.013 16.8 2.0 1 23 549 571 549 571 0.98 4 11 1.1e-05 0.00091 20.4 4.1 1 23 578 600 578 600 0.99 5 11 6.4e-06 0.00053 21.2 0.1 1 23 606 628 606 628 0.93 6 11 1.2e-06 0.0001 23.4 0.1 1 23 634 656 634 656 0.99 7 11 2.1e-05 0.0017 19.6 0.6 1 23 662 685 662 685 0.95 8 11 1.1e-05 0.00091 20.4 3.3 1 23 691 714 691 714 0.97 9 11 0.0003 0.025 15.9 1.3 2 23 721 742 720 742 0.96 10 11 2.9e-05 0.0024 19.1 1.1 1 23 748 770 748 770 0.97 11 11 0.0026 0.22 12.9 0.1 1 23 776 800 776 800 0.94
Sequence Information
- Coding Sequence
- ATGACGCTGTCCTGTTTTGTCTGCAACACGCTGGTTTCGCAGGCCAATGCCGGTGAACAGAAACATGTTAGAGAGTTTGCTGTTTCGGAGCTGTTCATAGAATATATGACTATAGATGAATCGGTGGCCAAACTTTTGACTGAGATTGTGGACAAACCGGTCACGGGTGGGGACACAACGTCCGCTATTATTTGTAAGCAGTGTCACAATATCTGCCAGGAATATGACAGCTCGAAAAAGAGaaTGCAAGAAATCAAAACGGAGATCACAAACGCATTCAAACTCACTCTAGCGCGACAGGGGTTAGAATACGATAAGTACCCCAAGAAAGTTTTCCCCACGACTCCTAAGAAACTTGTGTTGCCGAAGTCAAAATTGCAACCGCTACCACCAAACTATGTCATCGATGTAAGCAAGCTGCCGAAATCACTCAACACATCACCACCCACCGGTATAAACTTAAAATTCACCGTTGGCACCACCGTCTTCACCCAAACCATCCCCACCCAAAGCTCACCGCTAAAAACCCAAACAGTAACCACAGACAAAGCCGTAGAATCCAACATAGCTAATTCTCTATCATCCATACTGGGTACTAAGACTTCTACGTCGGTTTCTTCTAATACTTCTATGTTGACGTTTGAAGTTAATGATCTGCCTAAAGACTGGTTGAAAGATGGTGTCAAACGGGAATTGGTCGTTATGAGTAATgatagtgataatgataatgataatgatgatttgAATAATGATGAGCAGCCTATGGAGATTGATGaagAGTGTACAATAACAAAAATCCAAACTAAAGACAACGACCCACTCACAACACAACCGGACACAGAATCGAACAACGATAAACAATTGTTCGATGTGAGTCTGTTACCGATAAACAATGATGAGAATGAGACTAACGATCCTCTCATCGGCAAACTTGAGATCTTAGACGAACAACAGGATGATGAAACAGTGGAAGACGAAGAACTAATAATGCAAGATGAATCAGGATCTGTCATAAGATTTGTCGTCTCCGGTCACAAATTGGTGTACGAGAATGGCAGCTTACAGATAGCTGACGAAAATGCTGAACAAGGCAGTCAGGATGAGAACGGAGACGATTCGGCCGACGAGGCGCAGATAGAACTGCAGGTGTCTGGCGATGAGGAGACCGCCAACGCCATCATTGCAGCGGCTCAGGAACAAGgaGGGGCGTTTATAAAAGTGGGTACCGGCGAGATGTTCCGAGTGAAATCGGTCAAAAGTCAGCTGGAAGAGATGCCTCAAGTAAAGATGGTGGACGTACAGGGGAACCAGTTTCAATGCCTGCtctgcaataaaaataaagaagATAAAGAAACATCGGAGTCAGAAAAGAAATCTGTATTCGATACAGCGGACGAGACTATGCAACATCTGCGCAGCGAGCACGACGCCAGACTTTACATTTGCAACTTGTGTAAGAAGATCATACGTAGGAGAAGCGAGTACAATGCTCATATAGCGACGTGTTGCGTAAAAGAAGCTAAGAAAGTGGTAACTCCGAGCGAAGGGAAAGTCAAGTACCACGAGTGTCTGCATTGCAACAAGAGATTTACTTCCCGGACATTACTCACTGAACACCTAAACGTGCACACCGGAGCACGGCCGTACTCTTGCGCTGTTTGCGGGAAGACGTTCGCGTCAAAATATACGCATCAAGCGCATCTTAAGACGCATCAGGACCGCCCCCGCCCATACAAATGCAAGAAGTGTACGAAATCGTTCATGACGCAACAGAATTTGATGCAGCACGAGAAAACGCATTTAGGAATCAAGGACTTCGTCTGTAATATTTGTGgaaaagcGTTCGGAACCCAACATAACCTGGAAGTGCACGGCGTGGTGCATTCCAAAACCAAGCCTTATGAATGCTTTGAGTGCGGGAAGGCGTTCGCTAGAAGAGCCGAAGTTAAGGATCATATGAGGATACATACAGgCGAAAGGCCGTACGCTTGTGACGTATGCAGCGCGACTTTCACACAGAGATCCAATCTGAACTCACACAAACGCGCGACACATATGGACGACAAAAGATATGAGTGCAATGATTGCGGGAAGCGGTTCAAACGACGCAGACTACTAGATTACCACATAAAGGTGTGTCACACCGGCGAGCGTCCGTTGGAGTGCGGTGTGTGTCACGCGACGTTCGTGTACCCGGAGCACTTCAAGAAACACGCGCGCATACACAGCGGGGAGAAGCCCTTTGTTTGCGAGGTGTGCGGCAAGTCGTTCAACTCTCGTGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAACCTTACGAGTGTCTAGTGTGCGGCGCCGGGTACATGCGGAAACAGCTGCTCTACGCACACATGAACACCAGCGGTCATTTAGCTGAATCGATAGTTGTCAACCAACCGAGGGTCCAAAAAGTCAGAGAGAAAgACCCAACTGGGGAAAATAAGAAGACATACGAAGTTGTAAGTACACATACGAAGTTGTAA
- Protein Sequence
- MTLSCFVCNTLVSQANAGEQKHVREFAVSELFIEYMTIDESVAKLLTEIVDKPVTGGDTTSAIICKQCHNICQEYDSSKKRMQEIKTEITNAFKLTLARQGLEYDKYPKKVFPTTPKKLVLPKSKLQPLPPNYVIDVSKLPKSLNTSPPTGINLKFTVGTTVFTQTIPTQSSPLKTQTVTTDKAVESNIANSLSSILGTKTSTSVSSNTSMLTFEVNDLPKDWLKDGVKRELVVMSNDSDNDNDNDDLNNDEQPMEIDEECTITKIQTKDNDPLTTQPDTESNNDKQLFDVSLLPINNDENETNDPLIGKLEILDEQQDDETVEDEELIMQDESGSVIRFVVSGHKLVYENGSLQIADENAEQGSQDENGDDSADEAQIELQVSGDEETANAIIAAAQEQGGAFIKVGTGEMFRVKSVKSQLEEMPQVKMVDVQGNQFQCLLCNKNKEDKETSESEKKSVFDTADETMQHLRSEHDARLYICNLCKKIIRRRSEYNAHIATCCVKEAKKVVTPSEGKVKYHECLHCNKRFTSRTLLTEHLNVHTGARPYSCAVCGKTFASKYTHQAHLKTHQDRPRPYKCKKCTKSFMTQQNLMQHEKTHLGIKDFVCNICGKAFGTQHNLEVHGVVHSKTKPYECFECGKAFARRAEVKDHMRIHTGERPYACDVCSATFTQRSNLNSHKRATHMDDKRYECNDCGKRFKRRRLLDYHIKVCHTGERPLECGVCHATFVYPEHFKKHARIHSGEKPFVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVQKVREKDPTGENKKTYEVVSTHTKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -