Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000030.1:4063039-4069959[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0086 0.72 11.3 0.4 1 23 69 92 69 92 0.93

2 20 0.00052 0.043 15.2 0.3 1 23 189 211 189 211 0.98

3 20 0.014 1.1 10.7 0.9 1 23 216 239 216 239 0.96

4 20 0.041 3.4 9.2 0.5 2 23 247 269 246 269 0.95

5 20 0.00055 0.046 15.1 3.5 1 23 275 298 275 298 0.98

6 20 0.12 10 7.7 2.9 1 23 304 326 304 326 0.95

7 20 4.8e-05 0.004 18.4 3.4 1 23 332 354 332 354 0.99

8 20 0.00049 0.041 15.3 5.0 1 23 360 383 360 383 0.98

9 20 0.0098 0.82 11.2 1.1 1 23 473 496 473 496 0.94

10 20 0.038 3.2 9.3 4.9 1 23 566 588 566 588 0.98

11 20 0.0001 0.0086 17.4 0.2 1 23 592 614 592 614 0.98

12 20 0.00036 0.03 15.7 1.6 1 23 617 640 617 640 0.97

13 20 1.6 1.4e+02 4.2 2.5 2 23 648 670 647 670 0.91

14 20 9.3e-06 0.00078 20.7 1.1 3 23 679 700 678 700 0.98

15 20 0.00032 0.026 15.8 0.4 1 23 709 731 709 731 0.94

16 20 2.9e-05 0.0024 19.1 1.3 1 23 739 761 739 761 0.99

17 20 0.00083 0.069 14.5 6.5 1 21 766 786 766 787 0.93

18 20 0.024 2 9.9 3.4 1 23 946 969 946 969 0.91

19 20 0.1 8.7 7.9 0.0 2 23 1041 1062 1040 1062 0.94

20 20 0.47 39 5.9 0.8 1 23 1066 1089 1066 1089 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0086	0.72	11.3	0.4	1	23	69	92	69	92	0.93
2	20	0.00052	0.043	15.2	0.3	1	23	189	211	189	211	0.98
3	20	0.014	1.1	10.7	0.9	1	23	216	239	216	239	0.96
4	20	0.041	3.4	9.2	0.5	2	23	247	269	246	269	0.95
5	20	0.00055	0.046	15.1	3.5	1	23	275	298	275	298	0.98
6	20	0.12	10	7.7	2.9	1	23	304	326	304	326	0.95
7	20	4.8e-05	0.004	18.4	3.4	1	23	332	354	332	354	0.99
8	20	0.00049	0.041	15.3	5.0	1	23	360	383	360	383	0.98
9	20	0.0098	0.82	11.2	1.1	1	23	473	496	473	496	0.94
10	20	0.038	3.2	9.3	4.9	1	23	566	588	566	588	0.98
11	20	0.0001	0.0086	17.4	0.2	1	23	592	614	592	614	0.98
12	20	0.00036	0.03	15.7	1.6	1	23	617	640	617	640	0.97
13	20	1.6	1.4e+02	4.2	2.5	2	23	648	670	647	670	0.91
14	20	9.3e-06	0.00078	20.7	1.1	3	23	679	700	678	700	0.98
15	20	0.00032	0.026	15.8	0.4	1	23	709	731	709	731	0.94
16	20	2.9e-05	0.0024	19.1	1.3	1	23	739	761	739	761	0.99
17	20	0.00083	0.069	14.5	6.5	1	21	766	786	766	787	0.93
18	20	0.024	2	9.9	3.4	1	23	946	969	946	969	0.91
19	20	0.1	8.7	7.9	0.0	2	23	1041	1062	1040	1062	0.94
20	20	0.47	39	5.9	0.8	1	23	1066	1089	1066	1089	0.95

Sequence Information

Coding Sequence: ATGGTGGTGTGTAAACGAGGGGAAGTGTACATCAAAACCGAATTGGAAGATGAAGAGTTTGTTTTAGAAGCTATAGATGATTGTGAAGATGCAGTCAAACCAAGACGAGCTAAAGGAACGGTCTTAGAAAGACACAGGACCACAGTCAGAGAGATACTGCTGTGTTCCAACGCAACGCCCATACGAAGCAAAACTGGCATAGGGTACTCTTGCAGCTTCTGCGCACAACAGTTCCCTGACCCGAAAGACCTCAAAACGCATACCATTGAAACTCATAGCGTCGAAGAAAAAGCTAACTTTATGAAAGGAAAAGATTTGTCTAAATTCTACGTTAAAATGGACATAACGAAATTGAAATGCACTCTCTGTGATCTAGAAATAGCTACTGTTGAAGGAATTATGGATCATCTTAGCGAAGTTCATAAGAAAATTGTGTACAGTGAAGTCAAAAGCCAGATTTTGCCTTTTACGTTTGACGGAGAAGGCCTTAAATGTTTTGTTTGTAGGAATAGCGTTCATAACTTTAGAGTTCTAGTTGAGCATATGAACGTACATTATAGGAACTATATTTGCAAGGACTGTGACGCCGGTTTCGTCAGCCAGAGCATTCTGTTCCAGCATTTGAAGACTCATAAGATAGGGACGTTCAAATGTGATTACTGTACGAAAATATTCGAGACGCTGCTTAAGAAACGTGCACACGAGCGGGTCGTCCACACACACTCAAACGTCCTAAACAAATGCGGGTTTTGCTCGGAGACCTTCAAAGATTACTGGCAGCGGGAGAAGCATCTTGCCAGCGTCCACGGAATGGCCTCAGTCTACAAATGTCAAGCTTGCGACAAAACTTTCCAGCACCAGAAAGGTTTACGTATTCACACGAAACGCGACCACCTAATGGAGAGACCTCACGCATGCACACAATGCGAGATGAAGTTTTTTACAGGGAAAAAGCTTAAAGAGCATATGGTGAAACATACTGGACTCAGAGAGTTCCAATGTGAGGTGTGTTTGAAGTGTTACGGGCGGAAAAAGACCCTCAACCAACATATGAGGGTGCATGACGACTTCTGCAAGTTTAAGTGCAAGCATTGTGGCCAAGGGTTCGTTCATAGGACTAGTTATGTTGGGCATATGAGGTCGAAACATGGAGAGaggattagaatttatttaccaggttcaccacagcagcgaaGTGAGCCACATGTTGAGATCAAGAATTTAAAAGAAGATCCACAAGAACAAAACAACGCCTTAGAGCCAATGTTGATAATTGACGATGCCACTAACTCCTTAGACATGGCGGGTATCGAACTACCTAAAGAATCGGAAGCTTTGTTGAAAGTCAGATCGAATATCATTGAGGTCCTTAACAACTCTAACGCAACTCCTCTGaaaggacataatataaatGGTTTCGACTGTTTTTATTGCAGAGACAAATTCAAGACTCCAGCACAGTTGAAAGACCACATTTTGTACAACCACGAGTCTATTAAAAGTGAATTTATCAAAAGAGTTTCTTCAGGGTCGCTACTAGCGAAGCTCGACACTACTGGCTTAAACTGCTTGCTGTGTGCTGAAAACATCGACTATTTAGAAGACTTTATCTTACACTTGAAAAACGTTCACAAGAGAAACATGTTTCTGGACGTAAAAAACCAAATTTTCCCGTTCAAATTCCTTACGAACGAATTCAAATGTTGTATCTGCTTCAAAGTGATTAATAATTTTAGAAACTTATGTATTCATATGAATGCGCATTACAATAATTACGTTTGTGAAATATGTAAAATGGGATTTGTAAACAGACATGGACTGGTGAACCACATGGCTGTCCATAAGCAGTATAACTGTACATATTGCCCGAAGAAATTCGATACGCAAAGAAAAGTGCTAACGCATGAAAGGACCGTCCATACGCGTCCTAACTATCTGAATAAATGTGCACAGTGCAACCATGGTTTCAGGAATCATGCTGACAAGGTGAAGCATGTTACATTAGTTCATGGATTGGGCAGTCTCAAAAATCTTTGTCAGAAATGCCCCAAGTCTTTCAGATCTGCAACCAGCCTTCTCACACACATGAAGACCGAGCATCCCATAAAAGCTAAGCGGCCTAAGTACCCTTGCTCAGATTGCGATCAGATATTCGTCAACCGCAAGGAATTGTACAAGCATTCTCTGGAACACTTTAAACTTGGCCAACCGCACTTTCAATGCGAAACATGTTCCAAATTGTTCAGAGAGTCTATCAGCCTCGAAAGACATATGAGATCTCATGAAAAAAGGAATTTTAATTGTGAACATTGCGGGCGAAGCTTCGTTCACAATCGCAGCCTGCGGAAACACAAATGCAAGGCTAAGTCAACGTTTCGTCGAGATCTACTAAAGGAGAAAAATTCGCAGAACGATAGGTCTCAGAATTTAGAGGAAGTTTTGCAACGAGAACAACACTTGAAGGATGCTGTTACAAGTGGCTTATCGCAGCCAAAACTTAGACGAAGAAGACGAGTTAAACGAGTAGCACAGAACAGAACTGACATGATGACTATTTACGGAGCTTCAATTCGGGTACgtTCAACCAGGGCATCTAAACGACGCGACTCCTCATCAGATCAAATAAAACTGAAGAAAGGCAACTTTTCGTCTTTCATAGCCATCAAGCCGGCAAACGTGGAGAAAAAGAAACCGAAAAAGATAGAAAAGACGCCACCTGAACCAAACGTGAAGAAAAACATCTGTATCACAGAATTGGACCTACAGTTTGAAAACATAAACACCATTTTGCGTTGTTCAAACGCAACGCCTATTAGGGGTTACCAGGATAAAAAATACTCGTGCTCCTACTGCAAACATCAATACGAAAACCCGCgaactttaaaaaaacactCCTTAGAATCCCACGCGAATGATTCCCCGTCATTTTTGGACATCAAAACTCTCTCAAGATTCATTGTCCATATGGACATAAGCTACCTCAAATGTACTCTATGCGATGACCGAATCTACCTCAACTTGCAAACTTTGGTTGAACATTTAAAATCGGAACATTACGAGAATTTTTACGTcgatataaaaaattacatcgtcccatacaaattcgtGGATGTAAGGTTGACGTGCGCAGAATGTGGTGTGCAATTTGACGATTTTTTGGATTTACAAAGTCATACTATAGGACACAGCAGGAATTATAAGTGCGAGTTTTGTGACACGTATTTTTTGAACCGAAGTATGGCTATCGAGCATAAAAAGATGGCACATAATGTTTcgcaaaaaatatga
Protein Sequence: MVVCKRGEVYIKTELEDEEFVLEAIDDCEDAVKPRRAKGTVLERHRTTVREILLCSNATPIRSKTGIGYSCSFCAQQFPDPKDLKTHTIETHSVEEKANFMKGKDLSKFYVKMDITKLKCTLCDLEIATVEGIMDHLSEVHKKIVYSEVKSQILPFTFDGEGLKCFVCRNSVHNFRVLVEHMNVHYRNYICKDCDAGFVSQSILFQHLKTHKIGTFKCDYCTKIFETLLKKRAHERVVHTHSNVLNKCGFCSETFKDYWQREKHLASVHGMASVYKCQACDKTFQHQKGLRIHTKRDHLMERPHACTQCEMKFFTGKKLKEHMVKHTGLREFQCEVCLKCYGRKKTLNQHMRVHDDFCKFKCKHCGQGFVHRTSYVGHMRSKHGERIRIYLPGSPQQRSEPHVEIKNLKEDPQEQNNALEPMLIIDDATNSLDMAGIELPKESEALLKVRSNIIEVLNNSNATPLKGHNINGFDCFYCRDKFKTPAQLKDHILYNHESIKSEFIKRVSSGSLLAKLDTTGLNCLLCAENIDYLEDFILHLKNVHKRNMFLDVKNQIFPFKFLTNEFKCCICFKVINNFRNLCIHMNAHYNNYVCEICKMGFVNRHGLVNHMAVHKQYNCTYCPKKFDTQRKVLTHERTVHTRPNYLNKCAQCNHGFRNHADKVKHVTLVHGLGSLKNLCQKCPKSFRSATSLLTHMKTEHPIKAKRPKYPCSDCDQIFVNRKELYKHSLEHFKLGQPHFQCETCSKLFRESISLERHMRSHEKRNFNCEHCGRSFVHNRSLRKHKCKAKSTFRRDLLKEKNSQNDRSQNLEEVLQREQHLKDAVTSGLSQPKLRRRRRVKRVAQNRTDMMTIYGASIRVRSTRASKRRDSSSDQIKLKKGNFSSFIAIKPANVEKKKPKKIEKTPPEPNVKKNICITELDLQFENINTILRCSNATPIRGYQDKKYSCSYCKHQYENPRTLKKHSLESHANDSPSFLDIKTLSRFIVHMDISYLKCTLCDDRIYLNLQTLVEHLKSEHYENFYVDIKNYIVPYKFVDVRLTCAECGVQFDDFLDLQSHTIGHSRNYKCEFCDTYFLNRSMAIEHKKMAHNVSQKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -