Klyc026553.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- zfy1
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000030.1:4089188-4092616[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0093 0.78 11.2 0.8 3 23 86 107 84 107 0.90 2 22 1.9 1.6e+02 4.0 0.3 2 23 131 153 130 154 0.93 3 22 0.055 4.6 8.8 4.0 2 23 176 197 175 197 0.96 4 22 0.0016 0.13 13.6 0.1 1 23 201 224 201 224 0.95 5 22 0.005 0.42 12.1 0.4 2 23 230 252 229 252 0.94 6 22 0.029 2.4 9.7 2.1 2 23 262 284 261 284 0.94 7 22 0.0025 0.21 13.0 5.4 1 23 299 322 299 322 0.96 8 22 7.3e-06 0.00061 21.0 1.4 1 23 328 350 328 350 0.97 9 22 0.036 3 9.4 2.3 1 23 356 379 356 380 0.94 10 22 9.3e-05 0.0078 17.5 0.2 1 23 386 408 386 408 0.92 11 22 4.1 3.5e+02 2.9 0.1 3 23 491 512 489 512 0.88 12 22 0.0058 0.48 11.9 0.6 2 23 536 558 535 559 0.94 13 22 0.12 10 7.7 3.8 2 23 581 602 580 602 0.96 14 22 0.021 1.7 10.1 0.1 1 20 606 625 606 629 0.90 15 22 6.5 5.4e+02 2.3 4.8 2 23 635 657 634 657 0.93 16 22 0.21 18 6.9 2.6 2 23 667 689 666 689 0.91 17 22 0.0011 0.093 14.1 5.2 1 23 704 727 704 727 0.96 18 22 4.9e-05 0.0041 18.4 1.3 1 23 733 755 733 755 0.97 19 22 0.064 5.3 8.6 2.8 1 23 761 784 761 785 0.95 20 22 0.0025 0.21 13.0 0.7 1 23 791 813 791 813 0.90 21 22 3.1e-06 0.00026 22.1 2.1 1 20 819 838 819 841 0.94 22 22 0.0012 0.1 14.0 4.9 1 23 847 870 847 870 0.98
Sequence Information
- Coding Sequence
- ATGTGGGTTAGGTATAGCATTTCCACCACTAGTGGTAAACGACCAGAATTCAGTGAAATAGCAACTGAAAAAAAGGTAAAGTTTGAAGAAGTAACTGTTAAAATGGAAATCGGAGAAATTTCTGCACCGGTGGAGGTGAAAAGTTTGAATCCGAAAATTAATTTAGAATTGCTGAGTTGGCGAGTGGCCGTGAGGAGTTTGCTGGGCAGCTCCAACGCCACGGTGATACGAAACTACACCGATAAAGGCTATGGGTGCGGCTTCTGCCCTGAGCAGTTCCGAGATCCTGCTGAACTGAAAAAGCACAGCCACAACACACATAAAGCGGAAACATTCAAAGGCGATAGAGTTCAGGCACGATTCTTTGTGAAAATGGACACAACCGACTTAAAATGCAGTCTCTGCGAGGGACAATTCGCAACAATCGAACAAATCATCACACACCTCAACGAAAGTCACCACAAGAATGTTCTACCTGAAATCAAAAGTCTGATTATGCCATTCAAATTCGAAAATAACGAGCTGCGATGCTGTGAATGTTCAAAGATCTTCAACGCATTTCAAGCGTTACAAAACCACATGCATTCACATTACAGCAACTACATTTGTGACGTTTGCTCTGCTGGTTTTATTACACCAAAATCActtcaaaatcataaaaaagCTCTACACTTGGCTGAGTCCATTAAATGTAATGGTTGCTCAAAAGTTTTTATCTCGCGTGAAAAAGCGAGACAGCATGAATTAAAAGTTCACAAAAAGGATAAACGATACCTAACAAGCATGTGCAGGTTATGCAACGAACGCTTTAAAACTTATGATTTAAAGAAAAAGCATTTGAAACAAGCACACGGAGTTGTCGTAGGCGCTAGCGCTGTTGCAGATCCGGAAAAATTCAAATGCCGTGCATGCGACAAATGTTTTTCTAAAAAGGCCAGTTTGCGTTACCATACGGAGAGATTCCATATGATGTTAAAAGAGCATAAGTGCTCGGATTGCGATAAAGAATTTTATACTTTAGCCGATTTAAAAGTTCACATGGTGAAACATAGCTCAGAGAGGAAGTACAGTTGCGACTCTTGTCCAAATATTAGATTTAAGACATCTAAAGACTTGAGCTTGCACATAAAGAGGCACCATTTGATGGAACGTCCGCATGCGTGCCCGGAATGCGACATGAAGTTTTTTAGACCTGGCGAGCTTAGAGCACATATGCCTACGCACACTGGTCTTCGAGAGTTCAaatGTAAACGACCAGAATTCAGTGTAATAGCAACTGAAACAGAGGTAAAGTTTGAAGAAGTAACTGTTAAAACGGAAATCGACGACGAAGTTGATGTACCGGTGAAAGTGAAAAGTGTGAACCAGAAAACTAATTTAGAATTGCTGAGTTGGCGACTGGCCGTGAGGAGTTTGCTGGGCAGCTCCAACGCCACAGTGATACGCAACTACACCGATAAAGGCTATGGGTGCGGCTTCTGTGCCGAGCAAATCCGAGACCCTGCTGAGCTGAAAAAACACAGCCAAGACATGCATAAAGCTGATACGTTCATAGGCGACAAAGTTCAGGCACGATTCTTTGTTAAAATGGACATAACTAACCTAAAATGCAACCTATGCGAGGAAAACTTTACTACAGCCGAACAAATCATCACGCATCTTAACGAAAgtcatcataaaaatattttacctgatATCAAGACACTAATTATGCCATTCAAATTCGAAGATAACGACCTGCGATGCTGTGAATGTTCAAGGATTTTTAACGCTTTTCAAGCGTTACAAAACCACATGCATTCACATTACAGCAACTACATTTGTGACGTTTGCTCTGCTGGCTTCATGACACCAAAATCACTTCAAAACCATAAGGGAGCATTGCACGTAGTCGACTCCGTTAAATGCAATTGCTGTTCAAAAGTTTTTATCTCTCGTAAAAAGGCGAGACATCATGAATTAAAAGTTCACAAACAGGATAAAAGATACTTGACGTGCATGTGCAGATTATGCAATGAACGATTTAAAACTTATGCTTTAAAGAGAAAGCATTTAGAAGAAGTACATGGTGTTGTCGTAGGTGTAGGCGCTGTCGTAGATCCGGAAAAATTCAAATGTCTTGCGTGCGACAAATGTTTTTCTAGAAAGGCCACATTACATGCCCATACGGAGAGATTCCACATGATGTTAAAACAGCACAAATGTACGGAATGCGACAAGGAGTTTTATTCTTTACCCGAACTGAGGGAGCACATGGTGAAGCATAGTTCAGAGAGGAAGTATAGCTGCGAAACTTGTCCGAAcactaaatttaaaacaattagaTCCTTAAGCTTGCATATTAGAAGGCATCATTTGATGGAACGTCGGCATGCGTGCCCCGATTGCGACTTGAAATTCTTTACTACCGGAGAACTTAAAACGCATTTGCCGACACATACTGGTCTGAGGATATTTAAGTGTGACATCTGCCACAAGGCATTCAGTAGACAGAAAACTCTGAGACAACACATGCCGATACATTTGAATGAAAGAAGGTTTAAATGTGATCATTGTGaacaaacgttcgcgcaaaaaGTCTGCTGGAAAGGGCACATGCGTTCTAAACATGGCGAAAGAGTCTAA
- Protein Sequence
- MWVRYSISTTSGKRPEFSEIATEKKVKFEEVTVKMEIGEISAPVEVKSLNPKINLELLSWRVAVRSLLGSSNATVIRNYTDKGYGCGFCPEQFRDPAELKKHSHNTHKAETFKGDRVQARFFVKMDTTDLKCSLCEGQFATIEQIITHLNESHHKNVLPEIKSLIMPFKFENNELRCCECSKIFNAFQALQNHMHSHYSNYICDVCSAGFITPKSLQNHKKALHLAESIKCNGCSKVFISREKARQHELKVHKKDKRYLTSMCRLCNERFKTYDLKKKHLKQAHGVVVGASAVADPEKFKCRACDKCFSKKASLRYHTERFHMMLKEHKCSDCDKEFYTLADLKVHMVKHSSERKYSCDSCPNIRFKTSKDLSLHIKRHHLMERPHACPECDMKFFRPGELRAHMPTHTGLREFKCKRPEFSVIATETEVKFEEVTVKTEIDDEVDVPVKVKSVNQKTNLELLSWRLAVRSLLGSSNATVIRNYTDKGYGCGFCAEQIRDPAELKKHSQDMHKADTFIGDKVQARFFVKMDITNLKCNLCEENFTTAEQIITHLNESHHKNILPDIKTLIMPFKFEDNDLRCCECSRIFNAFQALQNHMHSHYSNYICDVCSAGFMTPKSLQNHKGALHVVDSVKCNCCSKVFISRKKARHHELKVHKQDKRYLTCMCRLCNERFKTYALKRKHLEEVHGVVVGVGAVVDPEKFKCLACDKCFSRKATLHAHTERFHMMLKQHKCTECDKEFYSLPELREHMVKHSSERKYSCETCPNTKFKTIRSLSLHIRRHHLMERRHACPDCDLKFFTTGELKTHLPTHTGLRIFKCDICHKAFSRQKTLRQHMPIHLNERRFKCDHCEQTFAQKVCWKGHMRSKHGERV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -