Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000030.1:2422977-2426040[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.021 1.7 10.1 0.7 2 23 30 52 29 52 0.94

2 16 0.00073 0.061 14.7 0.2 1 23 76 98 76 98 0.97

3 16 4.3e-05 0.0036 18.6 0.5 1 23 102 124 102 124 0.98

4 16 0.00013 0.011 17.1 0.1 2 23 130 152 129 152 0.96

5 16 0.0034 0.28 12.6 0.3 3 23 160 181 160 181 0.95

6 16 0.0001 0.0086 17.4 4.2 1 23 188 211 188 211 0.97

7 16 1.8e-05 0.0015 19.8 2.8 2 23 218 239 217 239 0.97

8 16 0.021 1.7 10.1 0.9 1 23 355 378 355 378 0.96

9 16 0.11 9 7.9 0.2 3 23 404 425 402 425 0.95

10 16 0.19 16 7.1 0.0 1 23 449 471 449 471 0.95

11 16 0.0003 0.025 15.9 0.2 1 23 475 497 475 497 0.98

12 16 0.0059 0.49 11.8 1.4 1 23 502 525 502 525 0.95

13 16 0.022 1.9 10.0 0.4 2 23 532 554 532 554 0.92

14 16 0.082 6.8 8.2 6.4 1 23 561 584 561 584 0.96

15 16 0.00027 0.022 16.1 4.4 3 23 592 612 591 612 0.96

16 16 2.7e-05 0.0023 19.2 0.6 1 23 618 640 618 640 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.021	1.7	10.1	0.7	2	23	30	52	29	52	0.94
2	16	0.00073	0.061	14.7	0.2	1	23	76	98	76	98	0.97
3	16	4.3e-05	0.0036	18.6	0.5	1	23	102	124	102	124	0.98
4	16	0.00013	0.011	17.1	0.1	2	23	130	152	129	152	0.96
5	16	0.0034	0.28	12.6	0.3	3	23	160	181	160	181	0.95
6	16	0.0001	0.0086	17.4	4.2	1	23	188	211	188	211	0.97
7	16	1.8e-05	0.0015	19.8	2.8	2	23	218	239	217	239	0.97
8	16	0.021	1.7	10.1	0.9	1	23	355	378	355	378	0.96
9	16	0.11	9	7.9	0.2	3	23	404	425	402	425	0.95
10	16	0.19	16	7.1	0.0	1	23	449	471	449	471	0.95
11	16	0.0003	0.025	15.9	0.2	1	23	475	497	475	497	0.98
12	16	0.0059	0.49	11.8	1.4	1	23	502	525	502	525	0.95
13	16	0.022	1.9	10.0	0.4	2	23	532	554	532	554	0.92
14	16	0.082	6.8	8.2	6.4	1	23	561	584	561	584	0.96
15	16	0.00027	0.022	16.1	4.4	3	23	592	612	591	612	0.96
16	16	2.7e-05	0.0023	19.2	0.6	1	23	618	640	618	640	0.99

Sequence Information

Coding Sequence: ATGACCGAGAACCATACAATTGAATCGCTTAAAAAAGTTGTGGAAGGCAAAAAAGATGACATTTTCAAAGTCGACGTGGGTAAAATGACTTGCAAAATTTGTTCGTTTAATTCTAAGGATCTTATAGAATTAAAACGACATTTGAAAGACGAACACAACAAAAATATAGACCCTGATCTTAAAGACAACATGATTCCGTTCAAAATTGATAGCGGGACGGAATCATACGATTGCGTTCTCTGCAAAGAAAATTTTAGGAGAATACCTACGCTGATATCTCACATGAAAGTTCATTTCAATAACTACTCTTGTGAAATCTGCGGTTCTGGGTTCATAACGCTGACTCATCTAAAGAATCATTTGCTGGTGCACAAAAATGGAAATATACCCTGCGATGTATGCGGCAAGGTCTTTACTACAAACCGCTCTAAGGGTATACACCTTCGAACAGTGCATTTGAAACAGTCGCACTGGGGTTGTCCGATGTGTCCCGAGCGCTTCTCGTCGTACTATACCCGAAATAAACATATCCAGGACGTCCATAATGTATTCACAAAAGTACACAAGTGTTTGCAATGTGATAAGTCTTTCAACCTCAAGGGTCATTTGACGATCCACACCCGATCTGTTCATCTAAAAGAGAAGAACGTTGAATGTGACATCTGTCAGAAGAGATTCTTCAGCAACAAGCACTTGAAGCAACACATGGTGACACACACCAGAACGGAAAAAACAAGACCGCCGACGAAGATTGTGCCTTTATTCCAAGTGGCATACGACAGGAGTCTTTGTAGACCTCTTGGGACGTTGTTTGACTTCGGTAAACTGAAAACAGCAAGACAGAAACAGGAACAGAAAGATTTTACACCTTCCAGAAGTGTATCACCATTAAATTGTGATTCGCCGTCGATACCGCCTGAAAATTTAAATTCCGCTCCACCTACACTCCCCATAGCTGTCCGCATCCAAAAATCTAAGACGAAAGCACCAGACGTCAGGCAGAATGTCCTAACAGTTTTCGAATTTTCGACCGTTTATCCTTTTATTTATGGCAACAATAAGTTCAAATGCTTCGTGTGTTCCCAACCGTTTTTAGAAACATCCTTGCTTCGAAAACACATGAATGAGAGTCACACGTTCGCACCGCTTAAAAGGCTTGTAAACAATAAGCGAGAAAACATTCTTAAGGTAGATGTCAGTGAATTAGCCTGCAAAATTTGTTCATACGCTCCTAAAGATTTTGTGGAACTGAAACGACATCTGAAAAGCGAACACAACAAAAATATAGACCCTGAACTACAAGACAATATGATTCCGTTCAAAATTGACGGCGGGAAGGAATCCTACGACTGCGTTATATGCCAAGAAAGCTTTATCAAAGTCCGCATACTGGTTATCCACATGAGCGTGCATTTCAATAATTACTCGTGCGAGATTTGCGGCTCCGGGTTCATGACGTTACGTCTTCTAAAGAAGCATTTAGAGGTCCACGAGAACGGCAACTTCCCCTGCGATAGATGCAGCAAAGTATTTACGACTACCCACAAGAGGGCTTTGCACATACGGGGAGTACATTTGAAGCAGTACCCCCGCCGTTGTCCCATGTGTCCTGAGCGCTTCAATTCGAACTACCGCCGAACCATACATCTTCAGGACGTACACAATGTATCAACGAGAGTGCACAAGTGTCTGCAATGTGGACGTGCCTTCAACCTGAAGTACCATTTGATATGCCACACGCGGTCCGTTCATCTGCAAGAGAGGAATCAGGCGTGTGACCTCTGCCATCAGAGGTTTTGCAACAAGGAGACCTTGAAGAGACACATGGTGATACACACCGGCGAAAAGAATTATAAGTGCGAAGTCTGCGGGATGGCGTTTTTGAGGAGGAAAAACCTGAAGGATCATTTGAGATTGCATGATATTGTATAG
Protein Sequence: MTENHTIESLKKVVEGKKDDIFKVDVGKMTCKICSFNSKDLIELKRHLKDEHNKNIDPDLKDNMIPFKIDSGTESYDCVLCKENFRRIPTLISHMKVHFNNYSCEICGSGFITLTHLKNHLLVHKNGNIPCDVCGKVFTTNRSKGIHLRTVHLKQSHWGCPMCPERFSSYYTRNKHIQDVHNVFTKVHKCLQCDKSFNLKGHLTIHTRSVHLKEKNVECDICQKRFFSNKHLKQHMVTHTRTEKTRPPTKIVPLFQVAYDRSLCRPLGTLFDFGKLKTARQKQEQKDFTPSRSVSPLNCDSPSIPPENLNSAPPTLPIAVRIQKSKTKAPDVRQNVLTVFEFSTVYPFIYGNNKFKCFVCSQPFLETSLLRKHMNESHTFAPLKRLVNNKRENILKVDVSELACKICSYAPKDFVELKRHLKSEHNKNIDPELQDNMIPFKIDGGKESYDCVICQESFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHENGNFPCDRCSKVFTTTHKRALHIRGVHLKQYPRRCPMCPERFNSNYRRTIHLQDVHNVSTRVHKCLQCGRAFNLKYHLICHTRSVHLQERNQACDLCHQRFCNKETLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHLRLHDIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -