Klyc026452.2
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000030.1:2760012-2772434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.014 1.2 10.6 2.5 1 23 231 253 231 253 0.92 2 31 3 2.5e+02 3.3 0.3 3 23 280 300 279 300 0.96 3 31 0.0036 0.3 12.5 0.8 1 23 322 344 322 344 0.98 4 31 4.4 3.7e+02 2.8 0.6 1 23 381 403 381 403 0.94 5 31 5 4.2e+02 2.6 0.1 2 23 432 454 431 454 0.95 6 31 0.29 24 6.5 1.3 2 23 475 497 474 497 0.92 7 31 0.0025 0.21 13.0 1.7 2 23 503 525 502 525 0.95 8 31 0.008 0.66 11.4 1.4 1 23 530 553 530 553 0.93 9 31 0.6 50 5.5 0.5 2 23 556 578 555 578 0.95 10 31 0.0067 0.56 11.7 1.5 2 22 585 605 584 605 0.95 11 31 0.025 2.1 9.9 0.5 1 23 664 687 664 687 0.95 12 31 2.7 2.2e+02 3.5 0.0 3 23 716 737 714 737 0.94 13 31 0.45 38 5.9 0.2 3 23 761 783 759 783 0.94 14 31 0.0013 0.1 14.0 0.6 3 20 790 807 788 811 0.90 15 31 0.014 1.2 10.7 0.3 1 23 816 839 816 839 0.97 16 31 0.0072 0.6 11.6 0.2 2 23 845 867 845 867 0.94 17 31 8.8e-05 0.0074 17.6 4.9 1 23 871 894 871 894 0.97 18 31 0.0011 0.088 14.2 0.6 2 23 901 922 900 922 0.96 19 31 0.24 20 6.8 1.3 1 23 978 999 978 999 0.98 20 31 0.11 9.2 7.8 0.0 3 23 1022 1043 1020 1043 0.95 21 31 1 85 4.8 0.4 5 23 1066 1085 1065 1085 0.93 22 31 0.00081 0.067 14.6 4.1 1 23 1090 1113 1090 1113 0.96 23 31 0.0021 0.17 13.3 0.7 2 21 1124 1143 1123 1144 0.92 24 31 0.4 33 6.1 5.2 1 23 1192 1215 1192 1215 0.97 25 31 1.3 1.1e+02 4.5 0.4 3 23 1289 1311 1287 1311 0.88 26 31 0.013 1.1 10.8 1.1 3 23 1318 1338 1316 1339 0.94 27 31 0.00096 0.08 14.3 0.5 2 23 1345 1367 1344 1367 0.95 28 31 0.0023 0.19 13.1 0.8 1 23 1372 1395 1372 1395 0.93 29 31 0.00036 0.03 15.7 4.7 1 23 1399 1422 1399 1422 0.97 30 31 0.0045 0.37 12.2 0.4 2 23 1429 1450 1429 1450 0.96 31 31 0.02 1.7 10.1 1.3 1 23 1456 1478 1456 1478 0.96
Sequence Information
- Coding Sequence
- ATGAACTTCGACGAAATAGTTGTAAAGGAGAACCCGGGCCTGTGCCGGTGTTGTCTATCCGAAGGCTGCTACAAAGATTTGGGCACTGAATACACTTGGATGAACGAAAATGAGGTTTACGCCGATATGTTGCTGGAATGCTTCGATATTAGCATATCACAACACAATGATGGCCCGAATGGCAGCAACCGTCTCATCTGCGAAGTGTGCATCACACGACTGCGAGACGCCTGCAATTTTAAGAAGCAAGTCCTCGACTCGGAGAAGAAATTTGTGGACATGCTGGCTCGTGGCGAGTTCCAGCCTAAGATGATAATGTACCAAGCTACACCGATGAAAGCTGAACAACTGCTGGAAGAGCCCGCCGCTGATGATGTGGAGTACTTGGAGGACATGGATTTTGAAGATGACCTGCCCCTCAACCAACTGGAGCCGTCCGTGTCAGATGTCACCACTACTGCTGTCAAAGTCAAGGGCAAGCGGGGTCGTCCCAAAAAGACGACCTCTCCAGTCAAGACCGAGAAGAAGATGAAGGTCGCCAAACTGGAGTCCAAGCCGCAGACTTCTAAGGCAGTCGCTAAAGGTGAAACGCCGCTCACGTCAACCAAACGAAACAGACTGCTCAAACGGAACGCGACGATCATTCTAGAAAACACCACCGTACTACCTTTCAAATGGCACAGGCAGAATTATCTGTGCTTCTTTTGCCATGAACAGTTCAAAACTGCCTCAGAACTAAAGGAACACAAGGACGAACATAAAAAGTCTAGTATAAAATCTGCGGTGTCGTATCTGAGAAGAGATGAGAAAGTCAAGATTGACGTTACTGACGCAAATTGCAAGATTTGCTCGGAATCTTTGATGAATGTTGAGACAATTAAGACTCACTTGGAAAGCCACGGCAAGATCTTCGCCAAAGATATTTCTTTAGGAGTAATCCCGTATAAGCTATCAGACGATACGTTCCAATGCGCTGTTTGTAGTGAGCAATTCCAGTATTTCGTGAATCTAAACTCGCATATGAATCAGCATTACGGGCCGCGGAAATCGAACAGCGAATCCTCATCAATGCGACGACGCAATAACCTACAAATCATATTCAATAACACCTCGATCATACCTTTCAAGTGGCGCGGAAAATACCTATGTTTCTACTGCAGCAAAGATATAGGGGAATATAAGGAATTAGTCAGTCATACCAAATCTCACGGATCTTGTTCGACGGAAGACCATTCGCTGAAGGTTCTAAAAGGCGGTCAAAATATGGAAATTAAAATCGATGTTTCAAATATATCCTGCTCGCTATGCAAAGAGGAAGTTGCTTCTTTTGATGATATTGTGAATCATCTAACTACAGAACATAGTTTGAAGTACGATAGAGACGTAGACATGGCTATAGAAGAGTATAGATTAAAAGATCTTTGTTGTTTAGTTTGTAGcgaaaaattctcatatttcggttATTTAGTTTCACATGTTAACAATAATCATCCGAAAAATTGTCTGATTTGTGACAAATGCGAACAGAAGTTTAATAAAAAGAGAGACTTGTTCTCTCACATCAAAAACTATCATAGGGAAGGCGGTTACAAATGTGAATACTGCCCGCAAAGTTTCAACTCCTTAAATATActaagaaaacataaaataaatagacatTTGACAAGATGCGGTATATGCCATTTGAAACTACCCTCAGCTGCCTTGAAACAAAAACATATGACTATAGAACATCCTGACGATGATTCATTACAGTGTTATATCTGTTCCAAAGAGTTCCACACGAAACAGGGTCTCAAAATGCATTTACGTAAATGCAAAGGCGAAGAGGAATTTTACGAAATACTCAAAAAAGAGGACCTAGATTTAGACTTAGACCAAAACTACGAGAATCCAGTCAAGAAACCTAGTGTTAAGAAAATTCGTGAAAATATAGTAACAGTTATTAACATGTCCACAGCGATACCTTTTAATTTCTACAAGAATAAATTTAACTGCTTTTACTGCGCGAAAGACTTCGAAGACTCTGATACTATGAGAGAACATACAATCATGGAGCATCCTACATGCGATTCGAAAGAAAAATGTATTAGAAAATGCCGCGAGACCGTAGCTTGCGTAAAAATAGACATATCCTCCTTAGCCTGTAAAGTCTGTTTTGAATCCATGCCCGACTTAGACTCATTACTCGATCATTTGATTATAAAACACGACGCTTCGTATGACAAGTCGATAACTACATGCTTACAGCCTTACAGACTGATAAAAGACCACATGGCCTGTCCGAATTGCCCTGACGAAGTTTTCAGGTTTTTCGGCACGTTACTCAAACATATCAacaacaaacatacagacaataatattatttgtgtaTATTGCGGTCAAACGTTTCGACGCGATCAAAACCTACGCGTACACATATGGCGGCATCACAGGGACGGCCGGTTCAAATGCAACATCTGCGGCGCAGAATGTAATATCCCGTCAAGACTGTACATTCATATGGCGAAAGCGCATAATGTCAAAGCGGCGAAATGTCCACAATGCCCTGAGCAGTTCCCCACTCAATACTTACGACAAAAACATCTTATCGAAGCTCATGACAGCGGACACAAATGTACTTACTGTGGTAAACTTTTCACTAGAAACTCGTTCATGCGCGATCATATAAGGCGAACGCATTTGAAAGAGAAAAACGTTGAGTGCTCAATTTGCAGTATGAAGTTCTTCAACAACATTCTCTTGAGGAGACACATGGTGAAACACAGCGGGGAGAAGAATTTCCATTGTGATCTGTGTGGGGAAAGAAGACCAAATTTGTTCGCAGATGAATACGGAACCACGGAAGATATCAGTGCGCGAAGACGTCGGAGAAACCTACGAACAATATTCGAAAATACCACAATATACCCTTTCCAATGGCAAGACGGATTCACGTGTTTTGTCTGTGATATACCATGTGTACTTGACGAACTAAGAAAACATACCAAATCACATCCAACCAGTGAATTACTGAAAAAAGTAACGCAACTAGTAGTCAAAGTTGACGTATCTGATATTATTTGCGAAGTATGCGAAAGAGCTTTTCAAAATATCGATGATATAACTGAACATTTAAGTACCGAGCATTCGTTGAAATACGACAAACGCGTGAATATCGATATAGTACAATACAGGCTGAGAGATTTGACTTGTGTCTGTGAAGAAAAGTTCGATAGTTTCACTGCTTTAGAAAAACATTACAAAGAAACGCATCCGAGAATTGTGTTCAGTTGTCACAAGTGCACGCAAAGTTTTTCAAAGAAACAGTATTTAGAAGAGCATATTCAGGAGAAACATGACGTAGTTAAGTCTGAAGTGAAATGTCTAATATGTCCTAGTTGCCATAAAGTTTTTACATCGAAAAAAGGCTACAAGTTGCATATTTCCAAAATCTGCGTTCGTGTTGAGCCGAAAGATGAAATTATCACAGAAATAGCCGAGAAACGCCCAAATCTTAAGCTACTTAGGGAAAGCCTAGCAAATTTTCTAAACATGTGCAATGTTATGCCTTTCAAATTTTTCATGCAGAAATTCCGCTGTTTCTACTGCTCCAAAGACTTTCCCGATTGCGATATCCTAAGACATCACACCACAACGGAACATAATCACTGCGATCCTAAAAGCAGACTTATGAAACTTATCAAAGGGAATAGCATAACTATAAAAATTGATATAACCAATCTTAGCTGTAGAGTCTGCGGACAAAATGCGATTACTATAGAAGATATTATTAATCACTTAGTTGATATACATTCGGCTGATTACGACGATGCCTTAGTAGATGTTTTACAACCGTACAAACTTGTCAAAGAAAACATGCCTTGCCTACTCTGCCCCAACACGACTTTTAGATACTTTTCGAAACTTCTAGAACATATGAACGAATTCCATTCTAGAAACAAAATCATTTGTTCGTTTTGCGGACAGGTTTTCGGAAAGGATCCCAACTATAGGTCGCATTTGAAACGCCATCACAATCCAAATTCTCTAAAATGTAACGACTGTGATTTAGAGTTTGATAATTTATCGAAACTATCGAATCATCGCGCGAAATTACACGGAGAAAAATCTTACAAATGCCCTGAATGTTTCGAAACTTTTGGTACACAATACAAGCGTCAAAAACATCTCATAGACGCTCACGGCTCCGGCCACCAATGCACGTTTTGCGGGAAACTCTTCACTAGAAACTCTTTCATGAAAGACCATATAAGACGAACTCATCTGAAGGAGAAGAATGCAGAATGCTCCGTCTGCAAAGAGAAGTTCTTTGACAATATCCTGTTGAGGATTCACATGGTGAAACATGTTGGGGAGAGGAATTTCCATTGTGATGTTTGTGGAAAGACGTTCTTGTGGAAGAAGAATTTGAGAGGGCATATGGCGTCACATAAGTAA
- Protein Sequence
- MNFDEIVVKENPGLCRCCLSEGCYKDLGTEYTWMNENEVYADMLLECFDISISQHNDGPNGSNRLICEVCITRLRDACNFKKQVLDSEKKFVDMLARGEFQPKMIMYQATPMKAEQLLEEPAADDVEYLEDMDFEDDLPLNQLEPSVSDVTTTAVKVKGKRGRPKKTTSPVKTEKKMKVAKLESKPQTSKAVAKGETPLTSTKRNRLLKRNATIILENTTVLPFKWHRQNYLCFFCHEQFKTASELKEHKDEHKKSSIKSAVSYLRRDEKVKIDVTDANCKICSESLMNVETIKTHLESHGKIFAKDISLGVIPYKLSDDTFQCAVCSEQFQYFVNLNSHMNQHYGPRKSNSESSSMRRRNNLQIIFNNTSIIPFKWRGKYLCFYCSKDIGEYKELVSHTKSHGSCSTEDHSLKVLKGGQNMEIKIDVSNISCSLCKEEVASFDDIVNHLTTEHSLKYDRDVDMAIEEYRLKDLCCLVCSEKFSYFGYLVSHVNNNHPKNCLICDKCEQKFNKKRDLFSHIKNYHREGGYKCEYCPQSFNSLNILRKHKINRHLTRCGICHLKLPSAALKQKHMTIEHPDDDSLQCYICSKEFHTKQGLKMHLRKCKGEEEFYEILKKEDLDLDLDQNYENPVKKPSVKKIRENIVTVINMSTAIPFNFYKNKFNCFYCAKDFEDSDTMREHTIMEHPTCDSKEKCIRKCRETVACVKIDISSLACKVCFESMPDLDSLLDHLIIKHDASYDKSITTCLQPYRLIKDHMACPNCPDEVFRFFGTLLKHINNKHTDNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYIHMAKAHNVKAAKCPQCPEQFPTQYLRQKHLIEAHDSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDLCGERRPNLFADEYGTTEDISARRRRRNLRTIFENTTIYPFQWQDGFTCFVCDIPCVLDELRKHTKSHPTSELLKKVTQLVVKVDVSDIICEVCERAFQNIDDITEHLSTEHSLKYDKRVNIDIVQYRLRDLTCVCEEKFDSFTALEKHYKETHPRIVFSCHKCTQSFSKKQYLEEHIQEKHDVVKSEVKCLICPSCHKVFTSKKGYKLHISKICVRVEPKDEIITEIAEKRPNLKLLRESLANFLNMCNVMPFKFFMQKFRCFYCSKDFPDCDILRHHTTTEHNHCDPKSRLMKLIKGNSITIKIDITNLSCRVCGQNAITIEDIINHLVDIHSADYDDALVDVLQPYKLVKENMPCLLCPNTTFRYFSKLLEHMNEFHSRNKIICSFCGQVFGKDPNYRSHLKRHHNPNSLKCNDCDLEFDNLSKLSNHRAKLHGEKSYKCPECFETFGTQYKRQKHLIDAHGSGHQCTFCGKLFTRNSFMKDHIRRTHLKEKNAECSVCKEKFFDNILLRIHMVKHVGERNFHCDVCGKTFLWKKNLRGHMASHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -