Basic Information

Insect: Keiferia lycopersicella
Gene Symbol: -
Assembly: GCA_029255805.1
Location: JARACZ010000030.1:4080302-4088567[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 37 6.9 5.8e+02 2.2 2.8 3 19 77 93 75 98 0.93

2 37 0.89 74 5.0 0.2 2 23 248 270 247 270 0.94

3 37 0.22 18 6.9 8.7 2 23 293 314 292 314 0.96

4 37 0.0038 0.32 12.4 0.1 1 23 318 340 318 340 0.97

5 37 0.031 2.6 9.6 2.1 2 23 346 368 345 368 0.91

6 37 0.15 13 7.4 1.1 2 23 376 398 375 398 0.92

7 37 0.035 2.9 9.4 5.0 1 23 405 428 405 428 0.97

8 37 0.018 1.5 10.4 1.2 1 23 434 456 434 456 0.95

9 37 3.4e-05 0.0028 18.9 6.4 1 23 462 484 462 484 0.98

10 37 3.6e-05 0.003 18.8 9.4 1 23 490 513 490 513 0.98

11 37 0.6 50 5.5 0.5 3 21 591 609 589 612 0.89

12 37 0.19 16 7.1 0.2 2 23 639 661 638 661 0.94

13 37 0.007 0.58 11.6 0.1 1 23 709 731 709 731 0.97

14 37 0.012 0.99 10.9 0.3 2 23 737 759 736 759 0.88

15 37 0.061 5.1 8.6 2.3 2 23 767 789 766 789 0.96

16 37 0.21 17 7.0 1.0 2 23 797 819 796 819 0.96

17 37 2.5e-05 0.0021 19.3 1.7 1 23 825 847 825 847 0.98

18 37 1.5e-05 0.0013 20.0 1.9 1 23 853 875 853 875 0.99

19 37 2.2e-05 0.0018 19.5 8.3 1 23 881 904 881 904 0.97

20 37 3.2 2.7e+02 3.2 1.7 3 22 979 998 977 1000 0.88

21 37 0.016 1.3 10.5 0.5 2 23 1026 1048 1025 1048 0.94

22 37 0.027 2.2 9.8 0.1 1 23 1096 1118 1096 1118 0.97

23 37 0.045 3.7 9.1 2.1 1 23 1123 1146 1123 1146 0.92

24 37 1.3 1.1e+02 4.5 4.9 2 23 1154 1176 1153 1176 0.92

25 37 0.00038 0.032 15.6 4.7 1 23 1183 1206 1183 1206 0.98

26 37 0.00032 0.026 15.8 2.0 1 23 1212 1234 1212 1234 0.98

27 37 0.0026 0.21 13.0 7.3 1 23 1240 1262 1240 1262 0.98

28 37 7.6 6.4e+02 2.1 3.4 1 13 1268 1280 1268 1281 0.90

29 37 1.5 1.3e+02 4.3 0.5 3 23 1358 1379 1356 1379 0.90

30 37 0.36 30 6.2 0.0 2 23 1405 1427 1404 1427 0.95

31 37 4.8 4e+02 2.7 3.7 2 23 1450 1471 1449 1471 0.96

32 37 0.0015 0.12 13.7 0.1 1 23 1475 1497 1475 1497 0.97

33 37 0.01 0.85 11.1 0.8 1 23 1502 1525 1502 1525 0.93

34 37 0.25 21 6.7 0.2 2 23 1533 1555 1533 1555 0.90

35 37 0.22 19 6.9 7.4 1 23 1561 1584 1561 1584 0.98

36 37 0.00047 0.039 15.3 2.6 1 20 1590 1609 1590 1612 0.92

37 37 3.4e-05 0.0029 18.9 3.1 1 23 1618 1641 1618 1641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	37	6.9	5.8e+02	2.2	2.8	3	19	77	93	75	98	0.93
2	37	0.89	74	5.0	0.2	2	23	248	270	247	270	0.94
3	37	0.22	18	6.9	8.7	2	23	293	314	292	314	0.96
4	37	0.0038	0.32	12.4	0.1	1	23	318	340	318	340	0.97
5	37	0.031	2.6	9.6	2.1	2	23	346	368	345	368	0.91
6	37	0.15	13	7.4	1.1	2	23	376	398	375	398	0.92
7	37	0.035	2.9	9.4	5.0	1	23	405	428	405	428	0.97
8	37	0.018	1.5	10.4	1.2	1	23	434	456	434	456	0.95
9	37	3.4e-05	0.0028	18.9	6.4	1	23	462	484	462	484	0.98
10	37	3.6e-05	0.003	18.8	9.4	1	23	490	513	490	513	0.98
11	37	0.6	50	5.5	0.5	3	21	591	609	589	612	0.89
12	37	0.19	16	7.1	0.2	2	23	639	661	638	661	0.94
13	37	0.007	0.58	11.6	0.1	1	23	709	731	709	731	0.97
14	37	0.012	0.99	10.9	0.3	2	23	737	759	736	759	0.88
15	37	0.061	5.1	8.6	2.3	2	23	767	789	766	789	0.96
16	37	0.21	17	7.0	1.0	2	23	797	819	796	819	0.96
17	37	2.5e-05	0.0021	19.3	1.7	1	23	825	847	825	847	0.98
18	37	1.5e-05	0.0013	20.0	1.9	1	23	853	875	853	875	0.99
19	37	2.2e-05	0.0018	19.5	8.3	1	23	881	904	881	904	0.97
20	37	3.2	2.7e+02	3.2	1.7	3	22	979	998	977	1000	0.88
21	37	0.016	1.3	10.5	0.5	2	23	1026	1048	1025	1048	0.94
22	37	0.027	2.2	9.8	0.1	1	23	1096	1118	1096	1118	0.97
23	37	0.045	3.7	9.1	2.1	1	23	1123	1146	1123	1146	0.92
24	37	1.3	1.1e+02	4.5	4.9	2	23	1154	1176	1153	1176	0.92
25	37	0.00038	0.032	15.6	4.7	1	23	1183	1206	1183	1206	0.98
26	37	0.00032	0.026	15.8	2.0	1	23	1212	1234	1212	1234	0.98
27	37	0.0026	0.21	13.0	7.3	1	23	1240	1262	1240	1262	0.98
28	37	7.6	6.4e+02	2.1	3.4	1	13	1268	1280	1268	1281	0.90
29	37	1.5	1.3e+02	4.3	0.5	3	23	1358	1379	1356	1379	0.90
30	37	0.36	30	6.2	0.0	2	23	1405	1427	1404	1427	0.95
31	37	4.8	4e+02	2.7	3.7	2	23	1450	1471	1449	1471	0.96
32	37	0.0015	0.12	13.7	0.1	1	23	1475	1497	1475	1497	0.97
33	37	0.01	0.85	11.1	0.8	1	23	1502	1525	1502	1525	0.93
34	37	0.25	21	6.7	0.2	2	23	1533	1555	1533	1555	0.90
35	37	0.22	19	6.9	7.4	1	23	1561	1584	1561	1584	0.98
36	37	0.00047	0.039	15.3	2.6	1	20	1590	1609	1590	1612	0.92
37	37	3.4e-05	0.0029	18.9	3.1	1	23	1618	1641	1618	1641	0.98

Sequence Information

Coding Sequence: ATGGCGTCTGACACAGTTAAGTTTGAGGAAGTAACTATCAAAaccgaaatcaaagaaaaagcAAAATCACCAGCAGTAAAAGATAAAGTAAAATCACCAgcagtaaaagaaaaaagagagaacaagaaaaagaatttAGAATTACAAAGTTGGCGAGCGGCTGTCCGGACCTTGCTGGCCAGCTGCAACGCTACAGCGATTCGGAACCACACCGATAAAGGTTACGGGTGCTGCTTCTGCCGCGAACAGTTCCCAGACCCTGCCGAGTTGAAAACGCACTGTGCCAATAACCACAAAGACGACATTTCCAAATTCAAAGGCGACAAGGAACAGGCAAAATTCTTTGTCAAAATGGACATAACCAACTTGAAATGTAAACGTCGAGAATATGGTGAAAACGCATCTGAAAAAGAGGTTAAGTTTGAGGAAGTTGATGTAAAATTTGAATCTAAAGACAATGTAAACGCATGTGTACCGGTAaacaaggaaaaaaaaataccgaacgCAAATTTGGAATTGCAGAGTTGGCGAGTGGCCGTGAGAAGCGTGCTAGCCAGCTCCAACGCCACGGTGATACGGAACCACACTGACAAAGGCTATGGATGTTGCTTCTGCCGTGAGCAGTTCCTAGAGCCCGCCGAATTAAAAACACATTATGATAAACACACTGCTGACATCCCAAAATTCAAAGGCGTCAAGGAACAATCAAAATTCTTTGTCAAAATGGACATAACAAACTTAAAATGCAATTTTTGCGTACAAAACTTTAATACCATCGATGAAATCTTAACGCATCTAAACGAAATCCatagtaaaaatatattgccTGAAGTTAAGACGCTAATTTTACCATTCAAATTTGATAGCAACGAGTTGCGATGTTGTGAATGCTCTCAGACTTTCCACACATTCCAAAATTTACAATCACACATGCATTCCCATTACAGTAATTATATTTGTGACGTTTGCTCTGCCGGTTTTGTGACTAAGAAATCGCTTCTAGTTCATAGAGCTTCGCACGAGACCGGCTCCGTCAAATGTAGTTATTGCTCAAAAGTCTTCGACTCCCAACATAAAGCCAAACAGCATGAGTCGTACGTCCACAAAGAGACTGTACCCAGATCCGTGTGCAGATTTTGCAACGAGCGCTTCAAAAGGTACACTGCCAAACAAAAGCATTTAGAAGAAGTACATGGCGTAGCACCAATGAGCTTCAAATGTCTTGCGTGTGACAAATTGTTTGccagaaaacatctgctgcatGCGCATACGAAGCGGTTCCATTTGATGCTGAGACCACATAAATGCATAGAATGTGGTATGGGATTCTTCTCCTCATCAGAGATGAACCAACACATGGTAAAGCATACTTTACAGAGAAAATACCATTGTCAGATCTGTCCCAAGTCGTTTTGCCATAGAGCAGCTCTGAACCGACACAGACGCATACATAACGACGATTTACGGTTCAAATGTGAGCACTGCGGGCACATGTTCGTCACGAAAACTAATTTGAAACGGCACATGTGTAAAAAACACAGTAAAGAACGAGCATGCACTGAAAAGACATCTGAAACTAAGATTGAGTTTGAGGAAGTAACTGTCAAAAATGAAATCAGGGCCGAAGTTGATGCACCGGTAGtcgtaaaaagaaagaaaaaggtACCCGATAGAAATTTAGAACTGCAGAGCTGGCGAGTGGCCGTGAGAGATTTGCTGGCCAGCTCCAACGCCACGACGATACGGAATCACAACGATAAAGGTTATGGGTGCTCCTTCTGCCGCGAACAGTTCCAAGACCCTGCTGAACTGAAAACACACAGTTCTGATAAACATACGGCCGCGGAAATTGCCAAATACAAAGGCGTTAAGGAACAATCTAAATTCTTCGTAAAAATGGACATAACAAACTTGAAATGCAAATTATGCGAACAAAGTTACAACTCAATCGAACAAATCATAACGCACTTGAACGAAATTCATAGCAAAAATGTGTTAGTGGATATTAAGAAACGTATTTTACCATTCAAATTCGACAGTAACGCGCTTCGATGCTGCGAATGCTTACAGACTTTCCACGCATTTCATAAATTACAAGCTCACATGCATTCCCATTACAGCAACTTCATCTGTGACATTTGCTCTGCCGGTTTCGTTACTCTGAAAACACTTCTAGTGCACAGAGCTACACACGAGACCGCGTCTGTTAAGTGTAGTTATTGCCCAAAAGTCTTTGACTCCCAGAATAAAGCGAAACAGCATGAATCTGCTATCCACAAAAAGTGTGCTCCAAAATCTGTATGCAGGTTTTGCAATGAACGCTTCAAAACGTACAACGAAAAACAGAAACATTTGCAAAAGGTGCACGGTGTAGCCCCAATAAGTGTCAAATGCCCTGCGTGTGACAAGTGGTTTGCCGGGAAGCATTTGTTGCTTACACACACTAAGAGATTCCACTTGATGCTGAGGCCGCATAAATGTACCGAATGTGGCATGGGATTCTTCTCCTCCTCAGAGCTCAACGAGCATATGTCAAAGCATACTATGGAGAGAAAATACCGGTGTAAAATATGTCCTCAGACGTTCTATTACAGAGCAGCTCTGAGCCGACACAAACGTACACATTCCGATGATTTGCGATTCAAGTGTGACCACTGCAATCACACTTTCATCACAAAAAGTAACTTAAAACGACACATGTTTAAGAAACACTGTAAACGACGAGTCGCCGAAAAGACatctaaaacaaaagttaagttTGAGGAAGTAAGTGTCAAAGAGGAAACCGATGAGGCAGTTGtcgcaaaaaatataaaaaagaaactcaACGTGAATGCGAATGTAGAATTGCAATGTTGGCGAGTGGCCGTGAGGAGTTTGCTAGCTAGCTCGAACGCTACGGCGATTCGGAATCACAGCGATAAAGGCTATGGGTGCTGCTTCTGCCGCGAACAGTTCCAAGACCCTGCTGATCTGAAAACACACAATTCTGAAAAGCACACCGCTGACATCGCTAAATTCAAAGGGGTCAAAGAACAATCCAAATTCTTCGTTAAAATGGACATTACTAACTTAAAATGCAAAATCTGCGAGAGCGAATTCGCAACAATCGAACATCTAATTACGCATCTAAATGAACAACATAGCTTAGACATATTCCCTGATATCAAAAGATTGATTTTGCCATTTAAATTCGATAGTAAAGAGCTATGTTGCTGCGAGTGCTGGCAAACGTTCCACACATTCAAAGTCCTTCAGGAACACATGCATTCCCACTATAGCAATTACATCTGTGACGTTTGCTCATCCGGATTTGTTACTAGAAACTCTCTCATACTGCACAGAGCGTCACATGAAACAGGATCCTTCAAATGCACGTACTGCTCAAAAATCTTTGACTCTCAACAAAAAGCTAGAATGCACGAAACCAAAATGCACGAAAACGCTGCCCCGAAATGCGTTTGCAAGTTCTGCAACGAACGGTTCAAAGACTTTCGCAAAAAGCAGAAACATTTAGAACAAGTGCATGGTGTAGCCACCACGAGTTACAAGTGTAAGGCCTGCGACAAATCGTTTTCCTATAAGAACACTTTGCGTTACCACACGAAGAGGTATCATCTCATGCTAAGACCGCATAAATGCAAAGAGTGCGGTATGGATTTCTTCACTGCTTTCGAGTTGAGCCAGCATATGATAAAACATTCCCCGCGAAGCCATTACCGTTGCGATATCTGTCCTAAGACATTTTGTCGGAAACAGTCTCTGAAATGCCACAAGAGAATACACTCCGATGATATGCGTTTCAAGTGTGAACACTGCGGCCACTTGTTTGTAACCAAATGTGTACGAGGAAAACTTACGAGAAAAAGACGGGCTTTGCAAACTGATATTGAAGACACAGCAATAAAGGCTGAATACTACGAACTACAACCGGAAAAGAGAGGAAAGAAAAGCAGCATAGACATGGCTAAATGCTTCTATGATTTGTACAGGCTAAGAACAGCCGTTCGTGAGATATTGACAAGTTCAAATGCAACAGTATTGCATGGGCACAGTGATAAAGGCTACGGTTGCAGCTTTTGCGGGCAATACTTCCTAAAACCGTACGATCTAAAGCAACACAATCTCCAACTTCACagcaaaaacataaaaacatttcTCAAAGGCAAGGAACACTCCAAGTTTTTCGTCAAACTGGACATTACCGATCTACAGTGTAATATTTGTAACCAGGGCATTAGCAACATTGCAGAGATGATCGATCATTTAAATAGCGATCACAACAAGAAAATACACGTGGATGTGAAGAAAGTAATCTTCCCATTCACGTTTCACGGCAACGAGTTGCGCTGCTCGGATTGCATGGAATTATTTTACACATTCAAAGCCTTACATGAGCACATGCATTCTCATTACAGCAATTACATTTGCGAAGTCTGCTCAGCTGGTTTTGTGACGAAAAGTTCACTTCTGTTGCATTTGACATCTCATGGGACTGGATCCTTTCAGTGCTCGCGTTGTCcaaaagttttcgatacaccgcaGAAGAAAAAGAATCACGAAGCGAAAGTACATGACGAGAAGGCTCCTAAAAATGTCTGTAGAATATGCAACGAACGTTTCAAAGAGTACTACGCTAAAGAAAAACATATAGCGGATGTTCACGGCATCAAAGCTGATTACAGATGTGAGGAATGTAATAAGACATATCACTGCAAAGCGCATCTACAAGGACACATCAAGAAGAATCACTTGATGATGCGTCCGCACAAATGTATGGAATGTGATATGAGTTTCTACACGTCCAATGACTTGAAGAAGCATATGCCAAAACACACGGGCTCGCGAGAATTTAAATGTACAGTATGTTCAAAGACTTACGCGAGAAAGACTACAATGAAACAGCACATGCGGGTCAAACACGGCGTGAACGAGTAA
Protein Sequence: MASDTVKFEEVTIKTEIKEKAKSPAVKDKVKSPAVKEKRENKKKNLELQSWRAAVRTLLASCNATAIRNHTDKGYGCCFCREQFPDPAELKTHCANNHKDDISKFKGDKEQAKFFVKMDITNLKCKRREYGENASEKEVKFEEVDVKFESKDNVNACVPVNKEKKIPNANLELQSWRVAVRSVLASSNATVIRNHTDKGYGCCFCREQFLEPAELKTHYDKHTADIPKFKGVKEQSKFFVKMDITNLKCNFCVQNFNTIDEILTHLNEIHSKNILPEVKTLILPFKFDSNELRCCECSQTFHTFQNLQSHMHSHYSNYICDVCSAGFVTKKSLLVHRASHETGSVKCSYCSKVFDSQHKAKQHESYVHKETVPRSVCRFCNERFKRYTAKQKHLEEVHGVAPMSFKCLACDKLFARKHLLHAHTKRFHLMLRPHKCIECGMGFFSSSEMNQHMVKHTLQRKYHCQICPKSFCHRAALNRHRRIHNDDLRFKCEHCGHMFVTKTNLKRHMCKKHSKERACTEKTSETKIEFEEVTVKNEIRAEVDAPVVVKRKKKVPDRNLELQSWRVAVRDLLASSNATTIRNHNDKGYGCSFCREQFQDPAELKTHSSDKHTAAEIAKYKGVKEQSKFFVKMDITNLKCKLCEQSYNSIEQIITHLNEIHSKNVLVDIKKRILPFKFDSNALRCCECLQTFHAFHKLQAHMHSHYSNFICDICSAGFVTLKTLLVHRATHETASVKCSYCPKVFDSQNKAKQHESAIHKKCAPKSVCRFCNERFKTYNEKQKHLQKVHGVAPISVKCPACDKWFAGKHLLLTHTKRFHLMLRPHKCTECGMGFFSSSELNEHMSKHTMERKYRCKICPQTFYYRAALSRHKRTHSDDLRFKCDHCNHTFITKSNLKRHMFKKHCKRRVAEKTSKTKVKFEEVSVKEETDEAVVAKNIKKKLNVNANVELQCWRVAVRSLLASSNATAIRNHSDKGYGCCFCREQFQDPADLKTHNSEKHTADIAKFKGVKEQSKFFVKMDITNLKCKICESEFATIEHLITHLNEQHSLDIFPDIKRLILPFKFDSKELCCCECWQTFHTFKVLQEHMHSHYSNYICDVCSSGFVTRNSLILHRASHETGSFKCTYCSKIFDSQQKARMHETKMHENAAPKCVCKFCNERFKDFRKKQKHLEQVHGVATTSYKCKACDKSFSYKNTLRYHTKRYHLMLRPHKCKECGMDFFTAFELSQHMIKHSPRSHYRCDICPKTFCRKQSLKCHKRIHSDDMRFKCEHCGHLFVTKCVRGKLTRKRRALQTDIEDTAIKAEYYELQPEKRGKKSSIDMAKCFYDLYRLRTAVREILTSSNATVLHGHSDKGYGCSFCGQYFLKPYDLKQHNLQLHSKNIKTFLKGKEHSKFFVKLDITDLQCNICNQGISNIAEMIDHLNSDHNKKIHVDVKKVIFPFTFHGNELRCSDCMELFYTFKALHEHMHSHYSNYICEVCSAGFVTKSSLLLHLTSHGTGSFQCSRCPKVFDTPQKKKNHEAKVHDEKAPKNVCRICNERFKEYYAKEKHIADVHGIKADYRCEECNKTYHCKAHLQGHIKKNHLMMRPHKCMECDMSFYTSNDLKKHMPKHTGSREFKCTVCSKTYARKTTMKQHMRVKHGVNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -