Klyc018609.1
Basic Information
- Insect
- Keiferia lycopersicella
- Gene Symbol
- -
- Assembly
- GCA_029255805.1
- Location
- JARACZ010000016.1:11100460-11121840[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.1e-06 0.00042 21.5 0.6 2 23 86 107 85 107 0.97 2 18 0.00058 0.048 15.0 0.8 1 21 129 149 129 150 0.97 3 18 0.00047 0.039 15.3 1.4 2 23 158 179 157 179 0.97 4 18 0.0001 0.0083 17.4 2.9 1 23 185 207 185 207 0.99 5 18 2.6e-05 0.0022 19.3 0.0 1 23 215 237 215 237 0.98 6 18 7.4e-05 0.0062 17.8 2.5 1 23 243 265 243 265 0.98 7 18 2.6e-05 0.0022 19.3 0.0 1 23 276 298 276 298 0.98 8 18 0.00058 0.048 15.0 4.9 1 23 304 326 304 326 0.98 9 18 3.6e-06 0.0003 21.9 2.7 2 23 333 354 332 354 0.97 10 18 0.036 3 9.4 5.4 1 23 361 384 361 384 0.97 11 18 0.00073 0.061 14.7 1.0 2 23 534 555 533 555 0.97 12 18 4.6e-05 0.0038 18.5 0.1 2 21 564 583 563 584 0.94 13 18 8.9e-05 0.0074 17.6 1.3 2 23 592 613 592 613 0.97 14 18 0.0001 0.0085 17.4 2.1 1 23 619 641 619 641 0.98 15 18 2.6e-05 0.0022 19.2 0.4 1 23 648 670 648 670 0.98 16 18 0.00025 0.021 16.2 3.0 1 23 676 698 676 698 0.98 17 18 0.00028 0.024 16.0 1.3 2 23 705 726 704 726 0.97 18 18 0.0008 0.067 14.6 3.7 1 23 732 755 732 755 0.98
Sequence Information
- Coding Sequence
- ATGTCTCAATTGGAGCCGGTCATGGAACAAGAAGTGAGCCTCAACCCTGAGACCTTCAGTGAGGACGCGGACATTGATGTTAAACCTGATATAAAACCCCTGAAAGAATGCCGGGAAGATGAGGACTCAGCGGCACCAGGTTTTGCTTTGCTGGAGCCAGAAGTCCAGCTAAAAGTCCAGTCTGAGAAGAATATTGTAGCTCGGGATTCCATTACGGATGAAGGGAAAgAACGAAAATCGAACCGAATATCGCAAACATGCGATCAGTGCGGCGAAACGTTCAGCCGTAGATCTGCGTACGCGCTACACATGAAGTCACACGGCGCGGCGAGCGCAGTGAGTGACGACCGCCAAGTGAAGAGTGTCAAACTTAGCGACACCGAGTTCAAATGTCTCTTGTGCGAAAGAATATTCCCCAACCAGCTCAACCTCTTCCGGCATCAGAGGTTCTGCTCGGGGCTGATGTCTCTGACCTGCCAGGTCTGCTTCCAGCGGTTCAAGGGCAAGAATCTCCTCACCAGCCACATGAAGGTCCACAGCACCGAGAGACCGTATGAGTGTGATCTGTGTGGACAGCGGTTTAAGCATAACAGTTCTGCGTTACAACACCGCCGACGCCACACAGAAAAACCCGACAAGAAGTTCCCGTGCTCCGTCTGTCAAAAATCGTTCGCAGTGATCAACGCGCTGGAGGCTCACATGCGCATCCATACCAAGGAGAAGCCGTTCCCGTGCCCCGTGTGCGCGCGCGCGTTCTCGCACAAACACAACATGCAGACGCACCTGCTGAGGCACGATAAAGTGCTGCACTTGAAATGCGAGGAGTTCCCGTGCTCCGTCTGTCAAAAATCGTTCGCAGTGATCAACGCGCTGGAGGCTCACATGCGCATCCACACCAAGGAGAAGCCGTTCCCGTGCCCCGTGTGCGCGCGCGCGTTCTCGCACAAACACAACATGCAGACACACCTGCACAGGCACGATAGAGTGCTGCACTTGAAATGCGAGGTATGCCACAAAGAGTTCAACAGGGAATCGACCCTGAAATACCACATGCGCGTGCACTATATACACAAGAAGCCACATAAGTGCGGGTTCTGTCCCAAGACGTACTCACACGTCCAGGGTATCACGAGGCACTATAGGAAGAAACATCCCGACCGGGAGTACATTGCGGCTATGACAGACGCGGAGTTTGCTAATAAGgctTGGGAGTTGCACAAGAATCAGAACATGACTGGCAAAGAGTACAATAGTTCCTACATACTGCCGGAATTAGAAGAACCaaatactattattataaacGAAGAAGAACAAAACTTAGAAGATCCTCTGCCAGAACCGGAAATGGAAAAAATAGAGCCAGAAAAGGAGCCGCGGTCTGAATTGGAGCCAGTCTTGGAAGTTGAAGTGAAGGTAGAACCTCTCCCGGCATGTTCTTCGCTTCCTGAGCGTTCCAAAAATGAGGTGGTTCAGATAGATATCAAACCAGATATAAAACATCTAACAGAAAATGGTGATAATGAAGAATGTGGCCCTCTAAAATCTGATGCCGTGTCTGGAGCAGAAATCCAAGaaggAAATTCAGAACTAGTATCACAAACATGCGGCGTGTGCAGCCTGACGTTCACTCACGAATCCGCATACGCAATGCATATGAAGTCACACGAGGAGAACGGTGACGCGCGGCTACCCTGTAATAGGTGCCAAAAACCGTTTTCCGACCCAGCAAACCTGCTGCGCCACCAAAAGTACTGCACCGGGCAGCCGCCGGAGACTTGCTCAGTCTGCAACCAGACGTTCAGGAACGCCAAGTTCCTGCAGAGCCACATGACGGTGCACAGCACGGAGAAGCCTTACGAGTGCGATCTGTGCGGCCAGAGGTTCAAACATCAGAGCGCGCAAGCTCGCCACCGCCTCCGCCATTCGGAACCAGCGCGTCAGTTCCCGTGTTCGGTCTGCGCTAAATCGTTCCGCGTGCGTCACGCGTTGGCGCTACACATGCGCATTCACAACAATGACAGGCCGTTCCAGTGCGCTGTCTGTATGCGCGCGTTCTCGCACAAGTACAACATGCTCAGACACATGCAGCGACACGACAGAGTGGTGCACTTGAAGTGCGAGaTATGCCACAGAGAGTTCCCGCTAGAGTCACGCCTCAAATACCATATGAGGGTACACTACAAAGACAAGCCTTTCAAATGTAAGCTGTGTCCAAAAACCTACTCGAACACGCAAAATATCACGAGCCATTATAAGAAAAAACATCCCGATCATGAATATATACCACAAGTTACGGATACGGAATTTGCTAATAAGgcCTGGGAGATGCATAAGAATCAAAATGTAACCGACATAAAATATAATAGCTCCTATATTTTACCAGAAATCgtagaaataagtagtaaaaatgataataatgacgAAGAAATGTCAGAAAATCCCTTACCGGAACCTGAAATGGTGATTTTAGAAAGCAATGTCGTTAAAATAGAAGTTACGGAAGAAGTTAGTTAG
- Protein Sequence
- MSQLEPVMEQEVSLNPETFSEDADIDVKPDIKPLKECREDEDSAAPGFALLEPEVQLKVQSEKNIVARDSITDEGKERKSNRISQTCDQCGETFSRRSAYALHMKSHGAASAVSDDRQVKSVKLSDTEFKCLLCERIFPNQLNLFRHQRFCSGLMSLTCQVCFQRFKGKNLLTSHMKVHSTERPYECDLCGQRFKHNSSALQHRRRHTEKPDKKFPCSVCQKSFAVINALEAHMRIHTKEKPFPCPVCARAFSHKHNMQTHLLRHDKVLHLKCEEFPCSVCQKSFAVINALEAHMRIHTKEKPFPCPVCARAFSHKHNMQTHLHRHDRVLHLKCEVCHKEFNRESTLKYHMRVHYIHKKPHKCGFCPKTYSHVQGITRHYRKKHPDREYIAAMTDAEFANKAWELHKNQNMTGKEYNSSYILPELEEPNTIIINEEEQNLEDPLPEPEMEKIEPEKEPRSELEPVLEVEVKVEPLPACSSLPERSKNEVVQIDIKPDIKHLTENGDNEECGPLKSDAVSGAEIQEGNSELVSQTCGVCSLTFTHESAYAMHMKSHEENGDARLPCNRCQKPFSDPANLLRHQKYCTGQPPETCSVCNQTFRNAKFLQSHMTVHSTEKPYECDLCGQRFKHQSAQARHRLRHSEPARQFPCSVCAKSFRVRHALALHMRIHNNDRPFQCAVCMRAFSHKYNMLRHMQRHDRVVHLKCEICHREFPLESRLKYHMRVHYKDKPFKCKLCPKTYSNTQNITSHYKKKHPDHEYIPQVTDTEFANKAWEMHKNQNVTDIKYNSSYILPEIVEISSKNDNNDEEMSENPLPEPEMVILESNVVKIEVTEEVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -