Klyc005885.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Keiferia lycopersicella
Gene Symbol
-
Assembly
GCA_029255805.1
Location
JARACZ010000004.1:1918479-1939380[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00037 0.031 15.6 1.7 1 23 428 450 428 450 0.96
2 20 0.0038 0.31 12.5 0.6 1 20 456 475 456 478 0.94
3 20 2.6e-05 0.0022 19.2 5.6 1 23 497 519 497 519 0.98
4 20 0.00023 0.02 16.3 4.7 1 23 525 547 525 547 0.99
5 20 4.6e-05 0.0039 18.5 5.3 1 23 553 575 553 575 0.97
6 20 1.4e-05 0.0012 20.1 7.3 1 23 581 603 581 603 0.97
7 20 1.2e-06 0.0001 23.4 3.5 1 23 609 631 609 631 0.97
8 20 0.00013 0.011 17.1 6.7 1 23 637 659 637 659 0.97
9 20 0.00013 0.01 17.1 6.5 1 23 665 687 665 687 0.97
10 20 6.1e-07 5.1e-05 24.4 1.9 1 23 693 715 693 715 0.98
11 20 1.1e-05 0.00096 20.4 7.9 1 23 721 743 721 743 0.98
12 20 5.4e-05 0.0045 18.3 6.6 1 23 749 771 749 771 0.98
13 20 5.6e-06 0.00047 21.4 5.2 1 23 777 799 777 799 0.98
14 20 1.1e-05 0.00088 20.5 6.4 1 23 805 827 805 827 0.97
15 20 0.00032 0.027 15.8 6.3 1 23 833 855 833 855 0.97
16 20 3.8e-06 0.00032 21.9 6.0 1 23 861 883 861 883 0.98
17 20 7.1e-05 0.0059 17.9 7.8 1 23 889 911 889 911 0.97
18 20 1.3e-06 0.00011 23.3 4.2 1 23 917 939 917 939 0.96
19 20 0.00068 0.057 14.8 0.3 1 23 946 968 946 968 0.96
20 20 0.032 2.7 9.5 5.4 1 23 978 1000 978 1000 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAGCACCACAACATGAACACGGGTGGTGGCCAACCTCCTGGAAATTCCGAGTCGCAGAACCAGAGGGTTCAGGCCGGTcagcagcagcaacagcagGCCAGCTTGACCCCTACGACTTCTGCCACGGATTTACGAGTGAATACAGCGGCGGTGAACGTCGCTTTGTCTAGTGTCGCCAAGTACTGGGTGTTCACGAATTTATTCCCCGGACCGTTGCCTCAAGTGTCCGTTTATGGACTGCCCACAGGAACCAGGATTGAGAATGGGAAACCTGTTCagGACCTGGGACAAGCACACGCTAGCATTCTCAATGGTGATCCAAACATTATACTTGGCCACCATGGTGGTCAGCAAACAGTTGCGGTTTCTGCATCTGGACAGCAGATTCCGGTCTCCCAAATTATTGCACAAGCCCAGGCTGGACAAACACATGAAGCTCTTGTGGCGCACAACCCGCAGCAAGAGATGAGCTCCCAGCAGCCATCAAACTCTGGTACCCAGGTCACCGTAACCGGGAACCAGCAAGGACACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGGCATCATTCACAACAACACATAATGCAGCAACAGCTTATGGCCACCACTCGCCCTGAACATAGTAATCAACAGATTCAACTGACTGTGAGCGAAGACGGCATAGTGACGGTGGTGGAGCCGGGCGGCGGCAAGCTGGTGGACAAGGAGGAGCTGCACGAGAGCATCAAGATGCCCGGCACCGACCACACGCTCACCGTGCACCAGCTGCAGCAGATTGTTGGACAACAGGTACTAGACAGCGTAGTACGCATCGAGCAAGCCACCGGCGAGCCAGCCAATATCTTAGTGACGCACAATCCTGACGGGACCACCTCCATAGAAGCCAGCGCCGGTGACAACCTCATAGTGAAAGGAGAAAAAGAGACGGCCAAGATGGAGACCGCCCAGTTCGCGATACCCGCCGAAATCAAGGATATCAAAGGGATTGATTTGAAGAGTGTGGGCGCGATGGGCATGGAGGGCGCTGTGGTGAAGATctcggcgggcgcgggggccgACCACGACCTGCACGCCATGTACAAGGTCAACGTTGAAGACCTCTCACAGCTGCTAGCGTATCATGAGGTCTTCGGGAAATTGAATGCAGAGGGGCAGCCGCAAAATAAAGTAATAACAGAGGTAGAGGTAGAAGCGGGCACGAGCGCCGCCATGGAGGAGTCGTCTCCCGGCCACCACGCCTGCGACCTCTGCGGGAAGATATTCCAGTTCCGTTACCAGTTGATAGTCCACCGGCGTTACCACGGGGAGAGCAAGCCCTACACTTGCCAAGTGTGCGGCTCCGCTTTTGCCAACCCTGTGGAGTTGAGTCGGCACGGGAAATGCCATATGGCAGGCGACCCGGCGGAGCGGCACGCCAAGAGGATGACGCAGGACAAGCCCTACGCCTGCACCACCTGCCACAAGACCTTCTCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGCGAGACGCCTTACAGATGCCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCGCATACGAACGATACGCCCTTCCGATGTACGCTCTGCGGCAAGTCCTTCACGAGAAAGGAACACTTCACCAACCACATTCTGTGGCACACTGGCGAGACCCCCCACCGCTGCGACTTCTGTTCTAAAACGTTTACCCGCAAGGAGCACTTACTGAACCACGTGCGCCAACACACAGGCGAGTCGCCGCACCGCTGCAACTTCTGCTCCAAGTCGTTCACGCGCCGGGAGCACCTCGTGAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACCAGGAAGGATCACCTCGTGAACCACGTCCGGCAGCACACGGGCGAGTCCCCCCACAAGTGCACCTACTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACGAACCACGTGCGGCAACACACCGGGGAGTCCCCCCACCGGTGCTCCTTCTGCGCCAAGAGCTTCACCCGCAAGGAGCACCTCACCAACCATATCAGACAGCACACGGGTGAGACTCCGCACAAGTGCACGTACTGCCCTCGCGCCTTCTCGCGGAAAGAGCACCTCAACAACCACGTGCGCCAGCACACCGGCGACGCGCCCCACACCTGCTCCTACTGCAACAAGACATTCACCAGGAAGGAGCATCTCGTCAACCATGTCAGGCAACACACCGGCGAGACCCCGTTCAAGTGCACGTTCTGCGCGAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACGTGCACCTGCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCAGCCGCAAGGAGCATCTCACCAACCACGTCAGGATACACACGGGCGAGTCGCCACACCGATGCGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGCGACACGCCGCACGCCTGCAAGATCTGCCAGAAGCCCTTCACCAGGAAGGAGCACCTCATCACGCACATGAGATCGCACAGTTGCGGCGAGCGGCCGTACAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACCAGAAGGGGCAGGGCGGCCCTCGACCCTTCCGCTGCGACATCTGCTCCAAGGACTTCATGTGTAAAGGTCACCTGGTGTCGCACCGGCGCACGcacggcggcgcggcggcggagGGCGGCGAGCAGCCCGCCGACGCGGAGGAGTGCGGCGACGCCGTCAAGTGCGAGAAGGAGCCCGTGGACCGCAAGCCCGACATCAGAGTATCAACAGAAAGCAGGCCTACTGAACAAGTGACTGTCGCGACGCATCAGAATACGACACAAACGACCGTTATGCAAATAACAAGTCAGCAAGTAGTGCGCGCTGGCGGCGTAGGCGTGCCCGTGAGCGCGGGCGGGGTGAGCGGCGCGAGCGGGTCGGGCGCCGTGGTAGCCACGTTCAGCCACGCGCCCGCCCCGCACCCcgcgcacccgccgcacgccgCGCACCACACCGGCCCCGCGCTCGCCCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPEHHNMNTGGGQPPGNSESQNQRVQAGQQQQQQASLTPTTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHHGGQQTVAVSASGQQIPVSQIIAQAQAGQTHEALVAHNPQQEMSSQQPSNSGTQVTVTGNQQGHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMATTRPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHESIKMPGTDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDNLIVKGEKETAKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGAGADHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQNKVITEVEVEAGTSAAMEESSPGHHACDLCGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANPVELSRHGKCHMAGDPAERHAKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCTLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCSFCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGDAPHTCSYCNKTFTRKEHLVNHVRQHTGETPFKCTFCAKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKICQKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGQGGPRPFRCDICSKDFMCKGHLVSHRRTHGGAAAEGGEQPADAEECGDAVKCEKEPVDRKPDIRVSTESRPTEQVTVATHQNTTQTTVMQITSQQVVRAGGVGVPVSAGGVSGASGSGAVVATFSHAPAPHPAHPPHAAHHTGPALAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00356648;
90% Identity
iTF_01403663;
80% Identity
-