Klyc029754.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Keiferia lycopersicella
Gene Symbol
-
Assembly
GCA_029255805.1
Location
JARACZ010000040.1:1703056-1718412[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.3e-09 6e-06 26.8 0.0 1 40 623 662 623 664 0.93

Sequence Information

Coding Sequence
ATGACGACGTCGATCCCCCCTCCGATCCTGTCTAATTGTATCGTATTCATCGTCACTAAACGCAGGACTACGGTGACGACGCCGGGCCCCTCTTTGACTCTGCCTACAGCGTTCAGGTGTCAGTTGTGGGCCAAGTACTTATTCCCTGGTAGAGATGATGTCAGCTCTATTGAATTTCAAAACAAGTTGTACAATGAGCACAAAATGTTGTGTTCAAAACACTTCAAAGATGAAGACTTCAGAGACGGTGCCAGAAGACGATACTTGATCAGAACTGCTGTTCCaattgatgatgatGTTCACCAACAAGTTCCAGTCTTTGTACCGGACCATGATTATATACAACAACAACCACAAGCTAATGTTGCTAGTACTTCTGGCCAAACCAAACATGGAACTGAACCTATGAGCTGCAATGAGCCTGTATTGAAAGTGCTGAAGAGATTTTCACAAACATTGAAGCCTGCGGACAATGAATTTGTTTTGATGTTTGACGAAATGTCACTACGCAAACATTTGCAATATGAAAGTAAAAGTGACATTATTGAAGGCTACCAAGATCACGACACTCAAGGCAGATCAGAAAATGTTGCTGCCTATGCATTAGTGTTTATGATTAGCGGAATTAGACTGAGAGTAAAACAGCCGATTGCTCATTATTACTCCAGCAGTTTTTCAACTGCAGATAGACTAGCTGTTCTTATAAAGAagGTTCTACATCACTGTGCAGAAGCTGGAGTGAATATTGCAGCGACAGTCTGTGACATGGATGGTGTGAACAGAAGAGCACTGTCTATCTTGGGCGCATCTACAGAGCGCCCATACATTACAATCGGGAACAAAGAAATTGTGACCATGTATGACACACCACATCTCCTGAAATGCTTCAGGAATTGTTTTATTAAATATGATATTGAATGCCCTACAAGTATAAATTCTACTGGCAAGACAGGCAAAGGTGTTGCTAAATGGAGCCATATTAAACAGTTCCATGAAATGGACAAAGCGAACCCAAACTTTGTATTTGCACCATGTTTAAAAGAGGACCACTTAAATCCAAATTCAAAGCAGAAGATGAAGGTTAATCTGGCAGCCCAAGTCTTGAGCCATTCTGTTGCAGCAGGAATGTTTGCAAAAATATCTAACgGTCTGTTAACTACAGAAGCCACAGTGACGGCAAATGTTGTTTCTAATATGGACACACTATTTGATGCTCTCAACAGCGATTCACCCGAGCCGCGTCGAGGGAAGCCGCACGCAACGAATATGAGCGCTTCGAGtccttataaaaaaatcttctcaGATATGAGGaacttttttacaaatataaaattcaTTGGAATTACTCGAAAACCACCATCACAGGAAGGATGGATAATGACCTTAAATGGAATGGAAAGGCTGTGGCGTAATTTAACCCTCAAGCATCCAACCATCAAAAGTCTTGCCACGCGAAGAGTGCAACAAGATGCATTGGAAAATCTTTTTGGGTGCATCCGTGGCAACTGTGGGTCCAACACTAATCCCACTTGTGGTCAATTTGTGGCAGGCCTTAAAACCGCAATTTTAAGCAAATTGGCTCACATGGGAACGACAGGCAACTGTGAGACTGATAATAATGTGATTATCAATAACTTTGACACATTATTATCAGTATCGCAACCTGCACACGTACCACATGCTGAATCTTCTTCCCCCCCTGGCATCAACATTCCTGACACCCTCTCATTTGAAGTAGATGAGGGGATGTCTGAAAATACTTCTGAAGTTCAAGCATGTGCGTATGTGTGCGGGTTTGTTGTGAAAGCTCTCCCATGCAAGGATTGTGAaATGTCTACGACAAACCCCAAACAGAAAACGACATATACTGAAGAATCTCTTCAGTTGGCATTAAAGGACATTCGTGATAACGGAGCAGGTATCAGGGAGACATGTAAAAAATACGGTATTCCTAGAACAACTGTCCAGGACCGTCTCAGCGGAAAACGTTCTGATGCTATAAAAAGACATGGACCTGACCCAATACTTGGAATTCTAGGAGAACAAAAAGTGGTTGAATGGCTGCCGAACCCTTTCAAAGATGATCGTCCTGGCCAGAAGTGGTACACGAACTTCCTCAAAAGACACCCAGAGATATCACTTCGATCTGCAGAAGGTATCAACAAAGCTCGCGCAAGGGTGACTGAAGAATCTATAAGACTGTGGTTCCGCGAACTGGAAACATATCTAGATCAAGAAGGGCATTCGGACATACTTCAAGACCCTGATAGAATTTTCAATGCTGACGAAAGCGGGTTTTCACTCTGCCCAAAGACAGGAAAAGTTCTTGGGCCCAAAGGATACCGCAATTTGTACCAAGTTACATCAGGCAACGAAAAAGAAAACCTTACTGTGATGCCAGCATTTAACGCAAGTGGTCAACAGGCCCCACTACTGGTGGTTTTTCCCTACATGCGCCCACCAAAACCTGTGAGCGATAGCGTGCCACTTCATTGGACTATAGGAAAAAGTGAAACTGGGTGGATGAAAAGCGATACCTTTATCGAATACATCACTAATGATTTCAATACATGGGTTGAATCAAACAATATCAAGAAGCCTATTTTCCTACTAGTCGACGACCACAGGGCACACATGTCCTTGGTGTTGAGCGCTATGTGTGAAGAGATGGAACCGGTTCACAACGAAATATCTAAAGCTCTGAAAATAGACAAAGACCAGGGGCCGTCTTTTGCATGTACAGAATTACCAGACTCAACCAAGACTGCAAGTGAATCTCTagctgaaaaaataattttgacatcTGATTTACCTACAAGTACTCCAGAAAAGAAAATGACCAAAACTGCTGCAGAAACAGTTCGACACTCGGACCCAAGAACTAAAATGGAATCTGATGATTGTAACGTGAACTCAGAAGGAGCATCTTTTGAACCAAAAGTTAACTTGCCCGTATGTGCGCCCAATAAATCAAATGAAAAAGAAGTGTCGGAAAATGAAGATGATATTTTAACGTTTGGTGTCACTAGTAATCAGAAGGAAGATACGGCACCGTTTTTACTGGACGATGTGTTCATGATGCCTAACATTCTAGAACGTTTAAACACTTCTCAATTCATTCCATCAATAGTTACATCTACAAATAAGAAAAATTCTATTGACCCAAACGAAGTGtttacaaaacatttatttttacctcAGCCGTTAgaaaaatcaaagaaaaatgtATCTAAACTTCGTATGCCTGCTTCGATATCTAGCAGAAAGTGGCGAGAGTATTATGAAGTAAAGGAAAAAGCTTAA
Protein Sequence
MTTSIPPPILSNCIVFIVTKRRTTVTTPGPSLTLPTAFRCQLWAKYLFPGRDDVSSIEFQNKLYNEHKMLCSKHFKDEDFRDGARRRYLIRTAVPIDDDVHQQVPVFVPDHDYIQQQPQANVASTSGQTKHGTEPMSCNEPVLKVLKRFSQTLKPADNEFVLMFDEMSLRKHLQYESKSDIIEGYQDHDTQGRSENVAAYALVFMISGIRLRVKQPIAHYYSSSFSTADRLAVLIKKVLHHCAEAGVNIAATVCDMDGVNRRALSILGASTERPYITIGNKEIVTMYDTPHLLKCFRNCFIKYDIECPTSINSTGKTGKGVAKWSHIKQFHEMDKANPNFVFAPCLKEDHLNPNSKQKMKVNLAAQVLSHSVAAGMFAKISNGLLTTEATVTANVVSNMDTLFDALNSDSPEPRRGKPHATNMSASSPYKKIFSDMRNFFTNIKFIGITRKPPSQEGWIMTLNGMERLWRNLTLKHPTIKSLATRRVQQDALENLFGCIRGNCGSNTNPTCGQFVAGLKTAILSKLAHMGTTGNCETDNNVIINNFDTLLSVSQPAHVPHAESSSPPGINIPDTLSFEVDEGMSENTSEVQACAYVCGFVVKALPCKDCEMSTTNPKQKTTYTEESLQLALKDIRDNGAGIRETCKKYGIPRTTVQDRLSGKRSDAIKRHGPDPILGILGEQKVVEWLPNPFKDDRPGQKWYTNFLKRHPEISLRSAEGINKARARVTEESIRLWFRELETYLDQEGHSDILQDPDRIFNADESGFSLCPKTGKVLGPKGYRNLYQVTSGNEKENLTVMPAFNASGQQAPLLVVFPYMRPPKPVSDSVPLHWTIGKSETGWMKSDTFIEYITNDFNTWVESNNIKKPIFLLVDDHRAHMSLVLSAMCEEMEPVHNEISKALKIDKDQGPSFACTELPDSTKTASESLAEKIILTSDLPTSTPEKKMTKTAAETVRHSDPRTKMESDDCNVNSEGASFEPKVNLPVCAPNKSNEKEVSENEDDILTFGVTSNQKEDTAPFLLDDVFMMPNILERLNTSQFIPSIVTSTNKKNSIDPNEVFTKHLFLPQPLEKSKKNVSKLRMPASISSRKWREYYEVKEKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-