Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 9.6e-12 6.2e-09 36.3 0.1 4 36 87 120 84 126 0.88

2 2 1.6e-08 1e-05 26.0 0.1 2 37 142 177 141 185 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	9.6e-12	6.2e-09	36.3	0.1	4	36	87	120	84	126	0.88
2	2	1.6e-08	1e-05	26.0	0.1	2	37	142	177	141	185	0.89

Coding Sequence: ATGGAGCTGAACGGTCTGAAGGAGTACGAATTTTTGTCAATCAATGGGAAGCAATTGTTATTGTATCAGAACTACACGTATTCGAAGCAAGGTGCGCGCTTCGTTCGGTACTGCACCAGGAGGCAAAGGGGAAAATGTCAGGCTAGAATCAAATTGAATCACAGCGGGAGGATTCTGTTCGCCGAGACCGATCACAACCATCCGCCGCCGCAGTTAATGAGAGCAGAGCATCTTCGACGGGGTAGATGGGCGGAGAAAAAGTTACAAGCAGCTATGGACGCTGTACGGCTTGGACAGCTGTCGTCGCACGCCGCGGCGAGACGCTATGGCATTCCTCAGAGTACGCTACACGACCATTTGGTCAGCGGATCAACTAGAATACGAATGGGACGACCCGCTCGTCGCAAACGTGGCAAATGGTCTGAGAAACAGTTACAAGCCGCTATGACAGCTGTGATGCTTGGGGAGCTGACCGTGTATGCTGCAGTGAAACGCTACGGCATCCCTCGGAGCACGTTACGAAATCACTTGCTCACCGGGAGCCTACACAAACAAATGGGCAAACCGCCTGTGTTGACTGAACAACAGGAAGAAAAACTTATCAAAAGGATTATGAAACATATTTATTTCTCCCTGGAATTCATAAAAACACCACAACACAAGAACCCTCTGCTGCTGCTACAGAAACACACGTTCGCGCAGACCACCAAGGACCGGCGCTACTGGAACTGCAGTAAGAAACACACCCTCAAGTGTCCAGCGAAACTTCGCTTCGACGAGAATGACATCCTGGTGCATTACCAGCTGAACCACAATCATGCGCCCCCGAAGATGATCAAAACCTCTGCTGGACACTACTATTTCGTACGAACGAAACAGTAG
Protein Sequence: MELNGLKEYEFLSINGKQLLLYQNYTYSKQGARFVRYCTRRQRGKCQARIKLNHSGRILFAETDHNHPPPQLMRAEHLRRGRWAEKKLQAAMDAVRLGQLSSHAAARRYGIPQSTLHDHLVSGSTRIRMGRPARRKRGKWSEKQLQAAMTAVMLGELTVYAAVKRYGIPRSTLRNHLLTGSLHKQMGKPPVLTEQQEEKLIKRIMKHIYFSLEFIKTPQHKNPLLLLQKHTFAQTTKDRRYWNCSKKHTLKCPAKLRFDENDILVHYQLNHNHAPPKMIKTSAGHYYFVRTKQ

Sequence clustering based on sequence similarity using MMseqs2