Kina011323.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:5693743-5712337[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.016 1.5 9.8 0.8 1 23 210 232 210 232 0.98 2 12 3.3 3e+02 2.5 2.0 1 23 239 262 239 262 0.87 3 12 3 2.8e+02 2.7 4.7 1 23 266 288 266 288 0.95 4 12 0.00066 0.06 14.2 0.2 1 23 293 316 293 316 0.97 5 12 0.00082 0.075 13.9 1.3 1 23 322 345 322 345 0.95 6 12 0.21 19 6.3 0.4 3 21 361 379 360 384 0.92 7 12 0.001 0.094 13.6 0.1 3 23 431 452 429 452 0.95 8 12 7.8e-05 0.0072 17.1 1.2 2 23 462 483 461 483 0.97 9 12 0.022 2 9.4 0.3 3 23 491 511 489 511 0.96 10 12 9.5e-05 0.0087 16.8 2.0 1 22 610 631 610 634 0.92 11 12 0.0022 0.2 12.6 0.6 1 17 844 860 844 861 0.92 12 12 5.6e-05 0.0052 17.6 0.8 1 21 878 898 878 899 0.96
Sequence Information
- Coding Sequence
- ATGGAGAACAATATTATGATTAGAAATGAAAACATATGCAGATTGTGTTTGAAAGGAAACATACGAATGTGTTTTATAAAGAATACGTATTTACAAGATGTTTACGAAAAATTAACGAATGTTGAATTAAACTCAAGTTACATACAATCATTGTGCTACTTGTGCGTTAAGCGGCTGAAACATTGTCACAAATTAATTCAACAAGCTATTACAACGGATAAATTATTGAAAGATGCCCTGCAGTGCGGTGTTGAGATTAGTAATATAGAATGTACACAAATATTCAAATTATCCGTCTCTTCAACTATTAACATTTCGTTGGATCCAGTAGAATTTGAAATAAAAGAAGAGAATGGCAGGATAAAAGAAGAATTAAAAGACAGTAAAGAAGATGAAAGTAAGGATGCCGATAATATTTCTAGTCAAAATGAAGACGAAGTACCTTTGAAGAGTATAAGCTTGAAGCAACGTCTAGAAAGAAAATTGGATAATGCGGTGAAGATTAAGAAATTTAAAAAGTTCAATAAAGATACAAAAGTCGACGCCCAAGAACTGATCCTTGATGATGAACAGCAAATGATTGAAATGTTACAACGTTCGAAGTCATTAAATTATTTAAATTCTCCGTACAAATGTGATTTGTGCTACAAAGGTTTTTTAGATCCGACAGCGTTTGAGAAGCATAAGGAAAAACATGATGAGATAAGCGGTCCACACGAGTGTAAACTCTGTCACCTCAGATACTTGACAGTGAAGTCGCTAAGAGCTCACAGTGTGTCTGCACATTCGAGACGATATGCCTGTAACATATGCTCCCATCGATCTCATACCAAGCACCAGGCGAAAGCTCATGAACAATGGCATAAAGGACATACTTACCCCTGTAAGCCCTGCGGACGAGCTTTCAGTAAGCCGACGTCGTACCTGTCCCACGTGCGCAAGTGGCACTCGAGTGCGAGCGAGCACGTGTGTCGCGAGTGCGGGGAAGGGTTCGCGAGGAAGCACGGCCTGCTGATGCACGTCAGCAAGTCTCATCGCAGGGATAATAAATCTAAAGAAGAACCAACATCGGAAGGCTTTTGCGTCGAATGCAACATTCAGTTCTCATCGTCCGAAGCGAAAACGCGTCACGTTTTGATATCTAAGCGTCACGTCATCTTCAAAGATAACGATTCCAAGTGCTCGCTATGCGGCGCGAAGGTCCCGTTCGCCGGTCGCGCGGCGCACGCGCGGAGACACGTGCGAGCGCTCGCACCGACGCACGCACCGCGGCCGGCGCTGCTGCTCGCCTGCGAACAGTGTGAAGCAACGTTTCCGAGTCGAGCGAAACTTCAGAATCACGTCAAACGAATTCATCTAGGACTGAAGTATAATAAGAATATCGTGTGCGAAATATGCGGGAAGAAGTGTACTTCGAACGCCACACTGGGGTACCACCAGCGGCGCCACACGGGCGAGAAGCCGTACGGGTGCGAATCGTGCGCGTCGCGCTTCATCAGCCGCGAGCAGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTTGCGGGAACTGCTCAGCCAGAAGCCGGCGCTCAACAGGCACTACCGGGTGACTGCGCATCCACGCGCGCACGCACTCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAACTGCTTCAGCCAGAAGCGGCGCTCAACAGGCACTACAGGGTGAGTGACGCGAGACTGTGGGTGGAGGGTGAGGGTGAGGGTGAGGGTGAGACACTGGGTGGGGTGATGCGAGCAGCTGCGCATCCACGCGCGCACGCACTCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAACTGCTTCAGCCAGAAGCCGGCGCTCAACAGGCACTACCGGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGAACTGCTCAGCCAGAAGCCGGCGCTCAACAGGCACTACCGGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAACTGCTTCAGCAGAAGCCGGCGCTCAACAGGCACTACCGGCTGCGCTATCACGCGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTTGCGGGAATGCTTCAGCCAGAAGCCGGCGCTCAACAGGCACTACGGCTCGCATCCACGCGCGCACGCACTCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAACTGCTTCAGCCAGAAGCGGCGCTCAACAGGCACTACAGGCTGCGCATCCACGCGCGCACGCACTCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGAACTGCTTCAGCCAGAAGCCGGCGCTCAACAGGCACTACCGGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAACTGCTTCAGCCAGAAGCGGCGCTCAACAGGCACTACCGGCTGCGCATCCACGGCGCGCACGCACTCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAAATGCTTCAGCCAGAAGCCGGCGCTCACAGGCACTGACCGGCTGCGCATCCACGCGCGCACGCACTCCGGCGAGCGCCCCTACCGCTGCGCGCTCTGCGGGAACTGCTTCAGCCAGAAGCCGGCGCTCAACAGGCACTACCGGGTGAGTGACGCGAGACTGTGGGTGAGGGTGAGGGTGAGGGTGAGACACTGGGTGGGGTGA
- Protein Sequence
- MENNIMIRNENICRLCLKGNIRMCFIKNTYLQDVYEKLTNVELNSSYIQSLCYLCVKRLKHCHKLIQQAITTDKLLKDALQCGVEISNIECTQIFKLSVSSTINISLDPVEFEIKEENGRIKEELKDSKEDESKDADNISSQNEDEVPLKSISLKQRLERKLDNAVKIKKFKKFNKDTKVDAQELILDDEQQMIEMLQRSKSLNYLNSPYKCDLCYKGFLDPTAFEKHKEKHDEISGPHECKLCHLRYLTVKSLRAHSVSAHSRRYACNICSHRSHTKHQAKAHEQWHKGHTYPCKPCGRAFSKPTSYLSHVRKWHSSASEHVCRECGEGFARKHGLLMHVSKSHRRDNKSKEEPTSEGFCVECNIQFSSSEAKTRHVLISKRHVIFKDNDSKCSLCGAKVPFAGRAAHARRHVRALAPTHAPRPALLLACEQCEATFPSRAKLQNHVKRIHLGLKYNKNIVCEICGKKCTSNATLGYHQRRHTGEKPYGCESCASRFISREQLRIHARTHSGERPYRCALAGTAQPEAGAQQALPGDCASTRARTRRAPLPLRALRELLQPEAALNRHYRVSDARLWVEGEGEGEGETLGGVMRAAAHPRAHALGERPYRCALCGNCFSQKPALNRHYRLRIHARTHSGERPYRCALCGTAQPEAGAQQALPAAHPRAHALRRAPLPLRALRELLQQKPALNRHYRLRYHARTHSGERPYRCALAGMLQPEAGAQQALRLASTRARTRRAPLPLRALRELLQPEAALNRHYRLRIHARTHSASAPTAARSAELLQPEAGAQQALPAAHPRAHALRRAPLPLRALRELLQPEAALNRHYRLRIHGAHALGERPYRCALCGKCFSQKPALTGTDRLRIHARTHSGERPYRCALCGNCFSQKPALNRHYRVSDARLWVRVRVRVRHWVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -