Kina005928.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3834781-3839081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.2e-06 0.00047 20.8 3.1 1 23 281 303 281 303 0.98 2 12 5 4.6e+02 2.0 0.3 5 14 377 386 375 389 0.87 3 12 0.043 3.9 8.5 4.2 2 23 406 428 404 428 0.89 4 12 9.9e-05 0.0091 16.8 1.3 1 23 432 454 432 454 0.98 5 12 0.00017 0.016 16.0 0.6 2 23 476 498 475 498 0.94 6 12 0.0032 0.3 12.0 2.0 1 23 502 525 502 525 0.97 7 12 0.77 70 4.5 0.7 2 23 548 570 547 570 0.89 8 12 1.5e-06 0.00013 22.6 1.9 1 23 580 602 580 603 0.96 9 12 0.0026 0.24 12.3 1.2 2 23 619 640 618 640 0.96 10 12 0.005 0.45 11.4 0.8 1 23 646 668 646 668 0.94 11 12 0.46 43 5.2 3.3 1 22 674 695 674 698 0.90 12 12 0.005 0.46 11.4 0.2 2 23 748 769 747 769 0.96
Sequence Information
- Coding Sequence
- ATGGAATTTCAAAATACAATTTCCTATGAACCCAATGAAGTTAATCAAATGCAACTAACAGATAATCTCAATATTAAAGAAGAGGAAGATATAACAGTGGATATTAAACCCGAAAACGATGAAAATGACACCAACGATAATCCATTTGAAAACATCCAAGTCGAAATTAAACAGGAGTTCATAACACCTAATTACGAACCAGATAAACAAATCCCATTATCAGATATCTGTAAGGATGCTGAAATTCTGAACACTGTATTGCAATTACAAAATGAAATCAACGAATCAATATTACCGAATACAGATAATGATATTAAAACGGAAAGCCAAGAAGAAGGTATAGGGTATGAATATCCGAGTGTTGACGAGGAAAGCATGGATAGTGAAGAAGCACAAGCCTTAAATAATGTAGAAGCGTGTTTACAAGATGAAATTGAAATAAAAAATGAAATGTATGAGGACACTCCAAAAGAAAATTTTGAAAAAATTATCAAAGAAGAAATGGATTTAGCAGTAACAGAAACTCATTTGATCTCAAATAAAGTAATCAATACAACATCGACTATCACAAATCCTCAAGATGGAGTAATACAGTCACAAACCACAAAAACTTTAGTTATGGAAATTCATCCAATGGTTCAAGGTATCAATGTTTCATCATTGGGTCGAATGGGAAATCCTGAAGAAATACTACCAACTTCTTACAGCAATGATGATAACCTAACGATGGAGTATCAAGACTCATTCCAATTAAATTCTATAACTGGTAATGTATTATCGCTAGAACAGGAAGCCTATGGTTTGTTGAAGGCAGATCGCTGTGATGTAAACGACAAGCCATTCAGCTGCAGTAAGTGTGATAAATCCTATAAAAAATCGAGATACTTGAAAGATCACATGCAAGTCCATAGAGCCATTGAAAACAGAGCCATGGGATTTATTAAAGGTCTTAAAACGAGGATGGAAAATATGAAGAAACGTATATGTAATGATCTTAAGAAAGACGTGAAAAAAGATATCAATGAACATTCATTTGAGAACAAAAAGGCTCGAACGGAAAGATTAGAGAAGAGAGCGCGGATTAAGGAAGAAGTTACTTTAAATATGAAGAAGGAAGGCTACGAGTGTACATGCGGGCAGACATTCAAACGTAAAACTAGAATGCTGTCTTGTTTAAGATCTCACGACGTGTACACGGACACCGAGTCTTGCTTTTCTTGTATATCGTGCACCAAACAGTTCAAAGACAAACAGGAGTTGACGTTACATCGTAAGCGTCTGCATCGCAAACGATTTCCTTGTAAATTCTGTCCAACCGATTATAGCACCAGAAAAGATTTGTTCAAGCATCTTCAAATACACCAAAAAGTTCAGTTGATGGAGTACAAAGTTATATCAGAAGTGGTTAAAGGGAAACAAAAACTAAAATGTTTTATGTGTTCCAAAACATTTTCGGAGCTATCGGAGTTAAAATCGCACGTGATGGAGGATCACGATCAACCCTATATTTGCCCACACTGCAAGAGGACGTTCCCAAAAATTATCGATTTCGGAAATCATACAAAAACATACCATCCAGAAGTCGAAGGCCAATCCGTCTTGGACGTCCTCGAAGCCTTTTCGAAATTGGTACAAGCTTGGAAATGCGAGGAGTGTAGCTTACAGTTTCACGAAGCTGACAAATTTGCAATGCATCAAGTCGAGAAACATAGTCCAGAATTGAAGGCGAAAGATCAATTCCAGTGCCCCGATTGTCGAAGAGTTTTCGTTAGCCAAAAGGGTTTGACGTCTCACAGAAGAATCCACCACAATACAGGCAGCACCGAGGAAACTGAGGCTATCGAACAGGGCGTTATGTGTGTCGAATGTCGGAAAATATGCAAAGACATGAACGCTCTAACTTCACACATGCGCCTACACTCTCCAGAACGGAAATATCCCTGCAAATTTTGCGATTTTCGTTTCTCGACACCGGAGAAGAGGAAAGTCCACGCTGAACTGCACACGGGAGATATGAAATTCGTCTGTTTCATATGCGAGTATCAGTGCAGTTCGGAGAATCGTCTGAAACAGCACAAAATGTCATTGAAACACGCGAACATGAAGGAGTTTCTGGTGACGGGCAAGCCGTTAGTCGAAGAACAGTCCACTTCCAAGGAGACGAAACACGAAGACAAATACGTTAAGAAGAGGAAGCATAGTAGAAGCACGCAATCTTCACCAGAGGACGCAGCGACCTCGACGTGTGAAGTCTGCGGGGAAAAGTTTCCAAGTGAAGGAAAAATGCTGGAACACAAACAATCTCACCCCTTCATTGAATTCCCCAATGAAGACACGCCTACTAGAATATTCTTTAAGTAG
- Protein Sequence
- MEFQNTISYEPNEVNQMQLTDNLNIKEEEDITVDIKPENDENDTNDNPFENIQVEIKQEFITPNYEPDKQIPLSDICKDAEILNTVLQLQNEINESILPNTDNDIKTESQEEGIGYEYPSVDEESMDSEEAQALNNVEACLQDEIEIKNEMYEDTPKENFEKIIKEEMDLAVTETHLISNKVINTTSTITNPQDGVIQSQTTKTLVMEIHPMVQGINVSSLGRMGNPEEILPTSYSNDDNLTMEYQDSFQLNSITGNVLSLEQEAYGLLKADRCDVNDKPFSCSKCDKSYKKSRYLKDHMQVHRAIENRAMGFIKGLKTRMENMKKRICNDLKKDVKKDINEHSFENKKARTERLEKRARIKEEVTLNMKKEGYECTCGQTFKRKTRMLSCLRSHDVYTDTESCFSCISCTKQFKDKQELTLHRKRLHRKRFPCKFCPTDYSTRKDLFKHLQIHQKVQLMEYKVISEVVKGKQKLKCFMCSKTFSELSELKSHVMEDHDQPYICPHCKRTFPKIIDFGNHTKTYHPEVEGQSVLDVLEAFSKLVQAWKCEECSLQFHEADKFAMHQVEKHSPELKAKDQFQCPDCRRVFVSQKGLTSHRRIHHNTGSTEETEAIEQGVMCVECRKICKDMNALTSHMRLHSPERKYPCKFCDFRFSTPEKRKVHAELHTGDMKFVCFICEYQCSSENRLKQHKMSLKHANMKEFLVTGKPLVEEQSTSKETKHEDKYVKKRKHSRSTQSSPEDAATSTCEVCGEKFPSEGKMLEHKQSHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00695997;
- 90% Identity
- -
- 80% Identity
- -