Kina016587.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- PACC
- Assembly
- None
- Location
- HiC:10474008-10481563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.9e-06 0.00018 22.2 0.4 1 21 166 186 166 187 0.95 2 18 0.67 61 4.7 1.3 3 23 193 213 192 213 0.95 3 18 0.007 0.64 11.0 0.4 2 23 219 241 218 241 0.92 4 18 8e-05 0.0074 17.1 2.5 1 23 246 268 246 268 0.99 5 18 4.9 4.5e+02 2.0 2.2 1 20 271 290 271 292 0.90 6 18 0.00022 0.02 15.7 0.8 1 23 304 327 304 327 0.95 7 18 0.047 4.3 8.4 3.8 1 23 333 355 333 355 0.96 8 18 0.88 80 4.4 0.4 1 23 389 412 389 412 0.92 9 18 7.7e-06 0.00071 20.3 1.0 2 21 536 555 535 556 0.94 10 18 1.7 1.5e+02 3.5 0.0 3 23 563 584 562 584 0.93 11 18 1.6 1.5e+02 3.5 3.2 1 23 589 612 589 612 0.94 12 18 0.00016 0.015 16.1 0.8 2 23 618 639 617 639 0.96 13 18 0.76 69 4.6 1.6 2 21 643 662 643 663 0.91 14 18 4.9e-05 0.0045 17.8 2.0 1 23 689 712 689 712 0.95 15 18 0.00024 0.022 15.6 0.5 1 23 718 740 718 740 0.95 16 18 0.053 4.9 8.2 0.1 1 23 746 768 746 768 0.97 17 18 0.0028 0.26 12.2 0.8 1 23 774 797 774 797 0.94 18 18 1.8e-05 0.0017 19.1 3.2 2 23 804 826 803 826 0.95
Sequence Information
- Coding Sequence
- ATGACACGTCAAGTGGATGTTAAAGCTCTAGTATCACATGTTATTCGTGGTGACGGTGTAAATAGGTGCCGAATATGTATGGGAGATACATCTGAAGGACAAGTACACTTGAGTGATACGGTATTAATGGATGGAGAGAAGCCTGTAACGCTCTCTGAACTGCTGGAAACCGTCACTGGAATCCAGGTTGACGTGGAAACCGAGGTACCCGCTGGCGTGTGCGGCCACTGCACAAACAGCGCCATCGCTGCGTGGCAGTTCAAACAGCTTATCCTCGAATCAGATAAACATTGGAGAAAAGCTGGTCTCTTACTATCAAAATTACAAGTGCAACCCGCAACCAAAGATAAAACTATCTTCATTGGTTGCAACACTCTCATAAGAGACAACATTGAGAATAAAAACCTACCTGAAGCTGTAGATAGGCTCAATTTATTAATCGGAAAAAATAAGAAAAAGAGAACGAAGTTCAAGAAAAATCGTAAAAGTAACGTATACAAGTGCAAGGATTGCGGTAAAGATTTTTCAGTGCCTTATTATCTGAATCGTCATTTGTTGAACACAAGAAAACGTGCTTGCAATTTGTGCGGTAAAATTCTTCCAAAACATCGTCTCGCTAAACACTTAAATAAAAATCACGGTAAATTAGTCATAAGTTGTAATATTTGCGAGAAATTGTTCGACGAATCCTTCGAATTGGAACGTCATAAGTTATTATTTCACGGAAAGGACTCTTTTCAGTGTAAAACGTGTAAGAACGGCTTCAAGAATGAGAGATCTCTCCGTGCCCATATGTATACCCACACTTTATTCAATTGCTTATCATGCAACGCTAGCTTTGAGAATCGGAAGTGTTACGCGTATCACAAGGCACGCTGCGACGGTTCGAAACGTGCAGCTGAAGGGATCTACGAGTGCCATGATTGTGGTAGTATATACACGAAGAAACCGTCTTTAAGGGTCCACATAATTCAGAAACATTTGAATATACTGCCTTACGTTTGCCAAACTTGTGGTAAACGTAGTTCAACTAAAAACCACCATAAAGCACATGAGCTTATCCACAAAACGGAGCGTAAAGTTTACGAATGTTACTGTGGTGCTAAATTGCTAACAGAGGTAGGGTTCAACATGCACCAAAGGATACATTCTGGGGAAAAGCCTTACGAGTGTGGTGTGTGTGGGAGCAGATTTCTATCAGCTTCTAGAAGGCTGGATCACATTAAACGAAAACATAGAAGTAAAGAATTAGCACATGGTTGTAGTCATTGTGAAGCGAGATTCTTACATGAGGAAATTTTATTTCCAAACGGGTTGTGTGTTTCTTGTACGAGTGTCGCGGTCGCATCGTACGAGTTCAGAGTGTTTGTTCGTAAAGCAGAAAAGTTATGGACGAATTGCATTAATTCCCTCGAAACCCTCCCAACATTGACCACTTCCTTTAAATCATTTTATGCGATCATACGAGAGAATTTATTAATTCATAATGTTAATAACTTCGATGGGGATGCAAAAGATTTATTAGATCACTTAACGAATCGATTCGTAAAGAGAAAGATATTAACAGAGAGGAAACCGAGACATCCAAGGGCTGGACCGGCATGTAGTTGCACAGATTGTGGTAAGAGCTTCATAAGCCCGTATTACTTGAATATGCATTTAAGGAACAGCGGCCAAAAAGAGGCTTGCTGGTTGTGTGGTGCCATGGTGACGAGAGGAGTTGAAATGAGCGCGCATATGACGAATATACATAAAACTGAAATGTTTTTGTGTACCCAATGTCCATTACTTTTCAAAAGTGAGTTAGAACGTAAGAGGCATGTAAAGAAATGTCATGGACCAGGTGTTTTGACGTGCAACGATTGTGGGAGAACATTTCAGAGGAAGGGATCTTTCGACGTTCATTCGCAAATGCACGCAGTGAGGACTTGTAGGGCTTGTGGTGTGCAATTTACGAACCGAGGCTGTTACAGAGAACATAGATCGAAGTGCGAACCCAACGCGAAACCTGACTTGAAAACTATACCAAGGAATAGGAGATCGAACATTCGAGATCCGGCGACGTTTACGTGCGATTATTGTAATAAAACTTACCATTCTCGTCCGCAATTGAAGAACCATATTCTCTGGATTCATATGGACATACGGCCTCATCAGTGCCAGTGGTGTGGGAAACGTTTTTATACTCCAGCCCGTTTGGCTGAACATACAGTGGTCCATACACGTGTTAGGAACTTCGAATGCGATATTTGTGGCGCGAAATTAGTATCCAAGATGGCGGCCGTGTACCATAGACGAAGGCATACGGGCGAACGGCCGTATGAGTGTCAAGATTGCGGCGAAAAGTTTATCTCCTCGTCGCGGAGGTCAGAACACGCGAAACGAAGACACAACAGAGGTTTGCGACTCCAATGTACGGAATGTCACGCAAGTTTTGTCCGAAATCATGAACTAAAGAAACATATGGACAAAGTACATAATCCAGATAACCAATTGATGGTCAAAGTGAAAAAAGAAAAAAGATTCTCTATGGCGGAAAGACCAATAGCTTGA
- Protein Sequence
- MTRQVDVKALVSHVIRGDGVNRCRICMGDTSEGQVHLSDTVLMDGEKPVTLSELLETVTGIQVDVETEVPAGVCGHCTNSAIAAWQFKQLILESDKHWRKAGLLLSKLQVQPATKDKTIFIGCNTLIRDNIENKNLPEAVDRLNLLIGKNKKKRTKFKKNRKSNVYKCKDCGKDFSVPYYLNRHLLNTRKRACNLCGKILPKHRLAKHLNKNHGKLVISCNICEKLFDESFELERHKLLFHGKDSFQCKTCKNGFKNERSLRAHMYTHTLFNCLSCNASFENRKCYAYHKARCDGSKRAAEGIYECHDCGSIYTKKPSLRVHIIQKHLNILPYVCQTCGKRSSTKNHHKAHELIHKTERKVYECYCGAKLLTEVGFNMHQRIHSGEKPYECGVCGSRFLSASRRLDHIKRKHRSKELAHGCSHCEARFLHEEILFPNGLCVSCTSVAVASYEFRVFVRKAEKLWTNCINSLETLPTLTTSFKSFYAIIRENLLIHNVNNFDGDAKDLLDHLTNRFVKRKILTERKPRHPRAGPACSCTDCGKSFISPYYLNMHLRNSGQKEACWLCGAMVTRGVEMSAHMTNIHKTEMFLCTQCPLLFKSELERKRHVKKCHGPGVLTCNDCGRTFQRKGSFDVHSQMHAVRTCRACGVQFTNRGCYREHRSKCEPNAKPDLKTIPRNRRSNIRDPATFTCDYCNKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNRGLRLQCTECHASFVRNHELKKHMDKVHNPDNQLMVKVKKEKRFSMAERPIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824963;
- 90% Identity
- -
- 80% Identity
- -