Kina006024.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:9854595-9859965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.001 0.094 13.6 4.3 1 23 186 209 186 209 0.98 2 15 9.8e-05 0.009 16.8 2.1 1 23 218 241 218 241 0.97 3 15 0.023 2.1 9.4 0.8 2 23 254 276 254 276 0.97 4 15 0.00028 0.026 15.4 0.8 1 23 285 308 285 308 0.97 5 15 2.8e-05 0.0026 18.5 1.3 1 23 320 343 320 343 0.97 6 15 9.1e-06 0.00083 20.0 0.7 2 23 372 394 371 394 0.97 7 15 0.0003 0.027 15.3 1.3 2 23 404 426 403 426 0.96 8 15 0.015 1.4 9.9 0.9 2 19 431 448 430 451 0.92 9 15 0.00026 0.024 15.4 2.1 2 21 456 475 455 478 0.94 10 15 0.0065 0.59 11.1 1.4 2 23 487 509 486 509 0.95 11 15 0.00018 0.016 16.0 2.9 1 23 514 537 514 537 0.95 12 15 2.1e-05 0.0019 18.9 0.7 2 23 548 570 547 570 0.96 13 15 0.00015 0.014 16.2 0.4 1 23 597 620 597 620 0.94 14 15 0.0029 0.27 12.2 1.0 2 23 654 675 653 675 0.97 15 15 3 2.7e+02 2.7 0.8 3 23 683 705 681 705 0.91
Sequence Information
- Coding Sequence
- ATGTCAATGAAAGAAGAGAAAGTGGATGTAAAGGATATAAAAATAGAAAAACAAGAAGATGCAGACAGAAAGGACCCCACATCATTCTTACCTGATGAGCCGATGACGTATGAAATTAAAACTAAAAAGAAGAAGAAAAAGAAAAAACAAGAAGATCCATTTAAGGATATTGAAGAAAAAGTTGCATTACCAACACCTACATTTTACGATCCAATCACCGAGCCAGAGGCTGAGCCAGTTTTGGATCCTGAAGTTAATATAAAAGTTGAAAATATCGAAGTTGAGCTGGATTTTAATGATTGCCCTCATCTTGACAGTGGCAGTACTATAATTTTGGGCAGAGATGGGGTATCTTCTACATTGAACCATCAAAGTTCTAAAGTGTTTGCTAATGATAATGGATTAATGGTAGAAGGTCCACAAAGTGAAGATAGTCAAGAGCCGGCTGTGAAAATCGAGGAACAAAATCATGAAGCAGTTCTATTAACATTTGAAAGTATAATAAATGATAAAAATGTCCTAGGTTTCGGTCCAGTCACTGCTCCAGCTCCCAATTATGTGTGCAAAGTTTGTCATCTAGTCTTTCAAACGACAAAAACACTTAGAATGCATCAGAAAAGAAAACATAAAGTATTCAGGAAATCTTTCAAATACATATGCCATTATTGTTCGATGTCGTACGAACAGAAGAATAGTCTTGTTGCCCATATTAAAAGGAAACATGGTCCAGATTCAGTGAACGATGATGGTGAAGAGAGAACATGTGATGTCTGTGCGTTAGTTTTTAAAGGTATGACGAGGTTACGAATGCATATGCGTAGAAAACATGGATCCTTTGAAGAGTCGTTCAAACATGTTTGTGAAGATTGTGGCTTAACGTACGACAAATACAGAAGTCTCATCGTACATATACAGAGAAAGCATACAAATGAGAAAAAGCCAGTTTTAGATCAATGGTACAATTGTCCCTTCTGCCCGAAAGTCTTTACTAAAAGAGAAACGTACGCGAGACACGTGCAAAGGAAGCATCGTGTTAAAGACGAAGATGATAAACCCGATGAAGAAGCTGAAAGTCTTCTGAAAAATTGCAAAAATGAAGAGACAGGAGAAATAACTTGTAAAGAATGTCCTCTAGTCTTTTCTTCGCTCAATTATTTAAAACTTCACATGAGAAGGAAGCACAATGCTTTGAAAGAAGATTTTCGTCTTAAATGTAGAATCTGCAATTTATCGTATGATAAGATTGAAAGTTTGAAACGGCATATACGAAGAAAACACGATAAAGGGTCTTATTGTGACGTGTGCGATAAACAATTCGAAACTAGGGATATGTATTTAAATCATTCACACAAGAGAATGATACAGGAATGTAACATTTGTGGTCTCGTATTTGCATCGCAGGGGGGTTTGTGCAAACATTTGCGTTGTACGCATAAAATACAATCACCGAAAACGATTGTATGCACTCTGTGCAACGAATCTTTCCACGATAAACGGCAATTGAAGCCTCATTACATGAAAGTACATTTAAAAGTGTCGTACACTTGTAAATACTGCAAGAAGATATTCAAAGCGAAAGAGAGTTATAGACGTCATGTCCTTTTAAAACATCCAACGAGTAAACCAAAAAGTGATCATCAAAGTTGCGATCAGTGCGACGAAACATTCTCTGATGAATTTGAATTATGTCGTCACATAAATATCGCACATGGTAAATCACAATCTGGTGAAATAGGACCCGTATCGTTGATAGAAATCAAAAAAGAAGAAGTTGAAATTCCAGATACTTTCCAATGTTCGAAATGTCCTGAAAATTATGCAAATTGGGAACAATTAAAACTACACTATGAACAGAATCATCAAATAGTACCTGAAACGCAATGCCAAGTGTGCGGTGAATTGATACCAGGGAACGAATTTCAGAAGCATTTAAAGATGTTACATACAGACACAACGGTACAGTGTAAATATTGTGAATTCGAAACGAATAATCGTGCAAGTATGACCCAACATATGTTGAGACATAAAAACGCAACTACTATCAACTGTAACTTCCCTGGTTGTAAATACAAGACATTCTACGAAGATGCCATGGATAAACATAAGAGAAAGCACGCTGATCAGGGTGTCAAACTGCAGTGTTCCCAATGTCCGTTTCAAACGATGAATAAGTATATATTAAAATATCATGAAGAAGCCCACGCTACGGGTAAAAGCGTTACTCCTGTGATCAATGCGATTATGCAACAATATTGCCAGCGAACTTAG
- Protein Sequence
- MSMKEEKVDVKDIKIEKQEDADRKDPTSFLPDEPMTYEIKTKKKKKKKKQEDPFKDIEEKVALPTPTFYDPITEPEAEPVLDPEVNIKVENIEVELDFNDCPHLDSGSTIILGRDGVSSTLNHQSSKVFANDNGLMVEGPQSEDSQEPAVKIEEQNHEAVLLTFESIINDKNVLGFGPVTAPAPNYVCKVCHLVFQTTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSVNDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCEDCGLTYDKYRSLIVHIQRKHTNEKKPVLDQWYNCPFCPKVFTKRETYARHVQRKHRVKDEDDKPDEEAESLLKNCKNEETGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRDMYLNHSHKRMIQECNICGLVFASQGGLCKHLRCTHKIQSPKTIVCTLCNESFHDKRQLKPHYMKVHLKVSYTCKYCKKIFKAKESYRRHVLLKHPTSKPKSDHQSCDQCDETFSDEFELCRHINIAHGKSQSGEIGPVSLIEIKKEEVEIPDTFQCSKCPENYANWEQLKLHYEQNHQIVPETQCQVCGELIPGNEFQKHLKMLHTDTTVQCKYCEFETNNRASMTQHMLRHKNATTINCNFPGCKYKTFYEDAMDKHKRKHADQGVKLQCSQCPFQTMNKYILKYHEEAHATGKSVTPVINAIMQQYCQRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- -
- 80% Identity
- -