Kina016554.1
Basic Information
- Insect
- Kallima inachus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3715911-3719909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.016 1.5 9.8 0.1 1 23 85 108 85 108 0.93 2 18 4.2 3.8e+02 2.2 0.7 2 23 133 155 132 155 0.90 3 18 0.17 16 6.6 0.3 3 23 179 199 177 199 0.94 4 18 0.00029 0.027 15.3 0.0 1 23 203 225 203 225 0.98 5 18 0.002 0.18 12.7 1.6 1 23 230 253 230 253 0.97 6 18 1.3 1.2e+02 3.9 0.4 2 23 261 283 261 283 0.90 7 18 2.9e-06 0.00026 21.6 4.6 2 23 291 313 290 313 0.96 8 18 0.00021 0.019 15.7 0.3 3 23 321 341 319 341 0.96 9 18 4.8e-06 0.00044 20.9 4.0 1 23 347 369 347 369 0.98 10 18 0.0076 0.7 10.8 0.9 1 23 485 508 485 508 0.92 11 18 1.6 1.5e+02 3.5 0.0 2 23 535 557 534 557 0.91 12 18 4.1e-05 0.0038 18.0 0.1 1 23 608 630 608 630 0.98 13 18 0.0043 0.39 11.6 2.4 1 23 635 658 635 658 0.95 14 18 0.037 3.4 8.7 0.6 2 23 666 688 665 688 0.97 15 18 3.8e-05 0.0035 18.1 4.1 2 23 695 716 695 717 0.95 16 18 0.0029 0.27 12.2 1.8 1 23 723 745 723 745 0.98 17 18 2e-05 0.0018 19.0 1.3 1 23 751 773 751 773 0.99 18 18 0.0015 0.13 13.1 4.1 1 23 779 802 779 802 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCCGTACCTTACTCTAGAGGTGGAGGTGATCAACAAATAATCATCGTATCAGGTGAAAAGGCGGAAACGATTCTCCACAACCTACAAGTATCAAGAGTTGAAAAACCAACAAAAAGGAGTTATAAGAAATCTAAAAAGAATTTAGATGAAAAATCAATGCAAGAGGTTGATAAACATCGGAATAATGTGGCAGAAGTGTTGTTGAATTCTAACGCTACGCCGATACGGTTTCGCAGTGATATAGGCTATGCTTGTTCCTTTTGCACAGAACAATATCAAGACCCCGCTGATTTAAAGGCACATACAATAGAAAAGCATGATCAAGATCATTTAAGAAAAGCAGTTCAGGAAATGCGGTTATATACAGTTAAATTAGATATAACAGAGTTAAAATGTAACCTGTGTCACAATGATATACCTTCAATAGACATGCTAATGCAACACCTAATCCATGAGCATGAACGTCACTTTTACACTGATATTAAAAGTCATATGGTTCCGTTTAAATTTCAAGGCGAAGAGCTGAATTGTGCGATATGTTCGGCACAATTTCTAAAATTCAGAAATTTAACGGAACACATGAACGTCCATTTCCGTAATTACGTTTGCGATGTATGCGGTGCAGGTTTCGTCAATCGTGATATATTGAGAAGTCATTTGAGAATTCATAAAACCGGTTCCTTCTCTTGCAATTTTTGCTCGAAAACATTCAATACGCTAGTTAAGAAGCAATCTCATATCAATATAGTCCATAGAAAATTGTACATGACCCGAAAATGTGGATATTGTAACGAATTGTTTGACGATTACCGCAAAAAGAATGAACACTTGGCTAACGTCCACAACGTCACTCTTACAGAGTTGAAATGTAACTACTGTGAAAAGACATTTAGGCATCAGCAAGCATTGAGACGGCACACTAGAAGGGACCATTTGATGGAGAGGAAATATGGATGTGAAACTTGCGGTGTAAGATTTTTCAGTAGTGAAAATTTAAGTAGGCATATAGTAAAACATACAGGAGAGCGTCAATTCTCTTGTACCATATGTGGAAAAGCTTATGCTCGTAAGTGCTCCTTAAAACATCATATGAGTGTACATACGAAGGAGGGACGGAGACCAGCACGCTCATCCGCAAATACGAAGGAAGGACGGAGACCAACACGCTCATCCGCTAAATATCTTATCATTGATGATACTACTGAAACAGACGCTGTAGCAAGTAAATGCTCCGAAAGACTATATAAAGAAGCTGTAGAAGAAAATAAAAACAAATCAACTGATAAACGTGTTAAAAAAGAAGTATCGAATGAAATTAAAAAGAAAATCAAATCGAAGAAGATAAAATTAAAACCCATTAAAGAACTGTCTAAGCATCATCACAATATAAAAGAAGTTCTTCAATGGTCTAACACAACCCCTATTCATGGTAAAAGTGATTTGGGCTATTTGTGCTGTTACTGCTCTGAAAAATTCCCAGTTCCAGCCGATTTAAAAACTCATACGTTGCAGCTGCATAAAAACGATCCTAATCCTAAATTCTTGCAAAAAAGAGACCTCAAAAAATACCATGTCAAAGTCGACATCACCGGACTTCAATGTGACATTTGCAAAATAAATATTCAAAATATAGAAGATTTGATCGATCACTTAGGTAAAATGCACGATAGAAAAATTTATACGGATATTAAGAACCACATTGTGGGATTCAAATTCGAAGGGTCGAATGCTGATGAATTAAAATGCATCGTCTGTTCAAACGTTTATACAAAATTCAAGATATTATTTGAACACATGCATAAGCATTCAAGGAATTATATTTGCGATGTATGCGGTGCTGGTTTTATCAACAATAGGGCTTTGCTGAATCACCAAAAACGCCACAACTTAGGCGAGTTCAAATGTGATCAATGCGATAAAGTATTTGACAACGTCCACAAAAAGAACTCTCATGTCACAACTGTGCATGTACATGGATATTTACTTAATAAATGTGGTTATTGCAATCAAAAGTTTGCGGGATATCGAACGAAAGCAGAACATTTGAGAACTGCTCACGGTATAACTGAGCGTGCTAAATGCCAAGCATGCGAGAAGAGCTTTTCGACCAAGGACTCTCTGAATAAGCACGTAAAACGCCATCATTTGATGGATTATCGGTACAGTTGCACTCTTTGTGACATGAAGTTTCATGCTAATAAGAGTTTAGAAGAACATATGGTGAAGCACACTAAAACTCGTAGTTTTCAATGTGGGGTTTGTTTTAAACGTTACGGAAGACAACAAACGCTCAAGGAGCATATGCGTATTCATGACAACGATAGAAGATTCAAGTGCGAACACTGTGTAATGGCATTTGTGCAAAAGTGCAGCTGGCGTCGACATATGCAAGCTAAGCATGATGACCAAGTGTAG
- Protein Sequence
- MSAVPYSRGGGDQQIIIVSGEKAETILHNLQVSRVEKPTKRSYKKSKKNLDEKSMQEVDKHRNNVAEVLLNSNATPIRFRSDIGYACSFCTEQYQDPADLKAHTIEKHDQDHLRKAVQEMRLYTVKLDITELKCNLCHNDIPSIDMLMQHLIHEHERHFYTDIKSHMVPFKFQGEELNCAICSAQFLKFRNLTEHMNVHFRNYVCDVCGAGFVNRDILRSHLRIHKTGSFSCNFCSKTFNTLVKKQSHINIVHRKLYMTRKCGYCNELFDDYRKKNEHLANVHNVTLTELKCNYCEKTFRHQQALRRHTRRDHLMERKYGCETCGVRFFSSENLSRHIVKHTGERQFSCTICGKAYARKCSLKHHMSVHTKEGRRPARSSANTKEGRRPTRSSAKYLIIDDTTETDAVASKCSERLYKEAVEENKNKSTDKRVKKEVSNEIKKKIKSKKIKLKPIKELSKHHHNIKEVLQWSNTTPIHGKSDLGYLCCYCSEKFPVPADLKTHTLQLHKNDPNPKFLQKRDLKKYHVKVDITGLQCDICKINIQNIEDLIDHLGKMHDRKIYTDIKNHIVGFKFEGSNADELKCIVCSNVYTKFKILFEHMHKHSRNYICDVCGAGFINNRALLNHQKRHNLGEFKCDQCDKVFDNVHKKNSHVTTVHVHGYLLNKCGYCNQKFAGYRTKAEHLRTAHGITERAKCQACEKSFSTKDSLNKHVKRHHLMDYRYSCTLCDMKFHANKSLEEHMVKHTKTRSFQCGVCFKRYGRQQTLKEHMRIHDNDRRFKCEHCVMAFVQKCSWRRHMQAKHDDQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -