Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.9e-11 6.3e-09 35.8 0.0 4 39 107 143 104 147 0.89

2 4 9.1e-13 3.1e-10 40.0 0.4 4 39 161 196 160 199 0.94

3 4 8.5e-09 2.9e-06 27.3 0.1 2 32 214 244 213 245 0.95

4 4 7.6e-05 0.026 14.6 0.1 10 32 253 275 252 276 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.9e-11	6.3e-09	35.8	0.0	4	39	107	143	104	147	0.89
2	4	9.1e-13	3.1e-10	40.0	0.4	4	39	161	196	160	199	0.94
3	4	8.5e-09	2.9e-06	27.3	0.1	2	32	214	244	213	245	0.95
4	4	7.6e-05	0.026	14.6	0.1	10	32	253	275	252	276	0.94

Coding Sequence: ATGCCTCGTCTAATCTACTTCAGCATTTACAGCGAACGTACTACGGATGACCCTCAAGCGGTAATATATTCCGTGCAGTGCGTGCAAGGGTCGCTGGAGGAGCTGGCCCCCGCGCCCGCGGGCCCCGCCGCCACGCCCGTGTGCGAGCACGTGCCCGCGCCGCCGGACGCCTCACTCGCCACGCTCGAGCCTGCGCACGCGCATGACGTGGTGAGTTTAGTTGAGCAGCAACAATTAAGTAGCGACGACACGAGCGATTCAAACGGTCCCCAACAAGAGACGGTCAGTCGCGGAAGCCCTAAAAGCTGGACTCAGAAGGATATGGACCAGGCTTTGGAGGCGCTGCGGAAACACCATATGAGTCTCACTAAGGCGTCTTCCCGGTTCGGTATCCCGTCAACAACTCTATGGCAGCGAGCACACCGGCTCGGTATCGACACGCCGAAGAAAGACGGCGCCGCTAAGTCGTGGGGCGCTTCGGATCTTGCGCGTGCGCTTGCAGCACTTCGTTCTGGTGCACTGTCCGCTAATAAAGCCAGCAAGGCTTACGGGATCCCTAGCAGCACATTATACAAGATCGCACGGCGCGAGGGAATCCGGTTGGCGGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCGGACCTCGCACGAGCGCTCGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACGTGCGCGCACACACTCGCACCGACTGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCCACCGGTACGTGCGCGCACACACTCGCACCGACTGGTCAAGCAAGCCAACAACAGGATATACCAAAACATCCTGAAACAGAAAGTCAACCTCAAGATATTTATTACCAACAATTATCGCAAATACACACGGAACCTGAACTACAACATCCTTATATAAATGACATGGAACCTCATAGCCTTCAGACTTTACAGTATGGACATATGTACTACACGCAGTGTAATGTGTCCAGCTGA
Protein Sequence: MPRLIYFSIYSERTTDDPQAVIYSVQCVQGSLEELAPAPAGPAATPVCEHVPAPPDASLATLEPAHAHDVVSLVEQQQLSSDDTSDSNGPQQETVSRGSPKSWTQKDMDQALEALRKHHMSLTKASSRFGIPSTTLWQRAHRLGIDTPKKDGAAKSWGASDLARALAALRSGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAAQFGIPTGTCAHTLAPTAAIRCGAASVQRAAAQFGIPTGTCAHTLAPTGQASQQQDIPKHPETESQPQDIYYQQLSQIHTEPELQHPYINDMEPHSLQTLQYGHMYYTQCNVSS

Sequence clustering based on sequence similarity using MMseqs2