Isal002003.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- topi
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000013.1:1818228-1831679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.057 4.9 8.5 8.5 1 23 1078 1100 1078 1100 0.99 2 9 0.77 67 4.9 3.2 1 23 1149 1171 1149 1171 0.97 3 9 6.7e-06 0.00058 20.9 1.7 2 23 1176 1197 1175 1197 0.96 4 9 0.0068 0.59 11.4 0.8 1 23 1203 1225 1203 1225 0.98 5 9 0.016 1.4 10.2 2.0 2 21 1232 1251 1231 1256 0.93 6 9 0.021 1.8 9.8 0.1 1 23 1264 1287 1264 1287 0.88 7 9 0.52 44 5.5 0.2 2 23 1294 1318 1293 1318 0.93 8 9 1.1e-05 0.00094 20.2 0.8 1 23 1327 1349 1327 1349 0.97 9 9 1.4 1.2e+02 4.2 1.1 2 23 1356 1378 1355 1383 0.91
Sequence Information
- Coding Sequence
- ATGTATTCTTGGACATTGCTGTTCTTAGCAGTTGTTGTAGCAGAAGACTTACCATCTGGACTGGTCACAACCGACACGCAACAAGATTTAATCGCTGAGGCGTCTCAGAATAATGCCCAAGCGCAGAAACGCGAGGCTGGTCTGTCCAACTCTTACGGTGAACCGATACCAGCTGATTCGTATGGACCACCGTTGAACATACCTAACGTTGTTGCAGAATTGCCGGTACCAGTATACGGAGTCCcggaaacaaatatatttttagatacacCACCCGGTGCATATGGTCCGCCAGCACCAGTAATATTCCCAAATCAGAACTACGAAGGTCCACCACCACCACCAGTTGGTAAACCTAAACCAATTTATGGACCACCGAAATTCCACCCCCCAAAACAAACTTATGGACCACCAAAACCTATTTATGGGCCACCCAAAAAGACATATGGACCACCGAAACAAGGACCTCCTAAACCAAACTATGGTACCCCGTTTAAACCACCTAAAATTTCCTTCCCAAAACCTTCTTACGGGGTTCCTAAGCCAATATATGGCGCACCCAAACCAGTATATGGTCCTCCGAAATTCAGTTACAAGCCGTCTTCACTAAATGTTCATAATATACAATTACCCAACTTACCAATTTCTCCACCTCAGAATTTGGGAATAGTTGGAGCTAGTATCGGAAATGTAGGCAGCTTTAACACAATTGGAACTAGCTTTGGAAATCTTGAGGCAAGTGTTGGTACTAGTCTAGGCACAAACTTTGATTTAGGTTCAAATCTTCCAGCCCCAATATACGGCACTCCAATTAATAGTTTACCTGGCAACCTAAAACCTAAGTTCCCTATACCATCAGATACTTATGGACCTCCGGGGCATCCTTTAGGGCCAGTTGGTCCCAACGATCAGCTCGTAGTACATGATATTGGAAGTATTGGACATTACGGTCCACCACAACCAGACCCCAACCCACGACCCCCTCACCCAGGTATACCTGCTCCACCGACACCCCCTCATGTATTGTATGATGGATGGAAACCGATTCCTGGAGTATCGAAACCTTTTGTGCAATCTTTGGAAAACGTGCATACACTAGAAACAATTCACAATATAGGGCACGCCGGCCATATTGAAACGTTAGATCAATACGGACCTCCCCCACCACCACCAATAGTTCAAGAAGTACAAATTAACTTAGACGGTCATTCTCTTCCAAATTTCAATCAACAGTCTCAATTCTCAGGAGCTCAAATCACATCCGGATACTCTAGTGTACACCAAGACGCATTAGCAAACATTGACTTGAACGCAATTGTTGGTGGTGATTCAAACCATATCGATCAATCAAAGACTGTGTTTGAAGCTcattatactgaaaataatagcCCACAGTCAGCAGATTTAGTGTTCATTCAAAACGCGACCCCGGAAAAGCCATTTGATACGTATGGAGCACCACCATTAGAATCACTTTCCAACGGACCTTACCCACCTTCTCACAGACAACAAGGTGCAAAGGGACTCGTTCCACCTTCTGGAATATACGGCGTGCCTCCTGGAAGTCAATATGGGGCCCCACCGAAACCTTTACCAGCTAATCTGCCAATACCTTACGGTTCATTTTCAGGTGGTGGTCATTCTATACATACAGGTGGTCATACTCCAAGACATCCTATTAAGTTTAGAGATTCCGTACCTGAAGGTTTGATACAACAAATAAGCCATGTCACCCACCACAAAGATGCTAATAGCATAGATCATGTGAAACAAGGACCTGCATATTTACCACCACCAATTAGGGAAGTTAAAGATGTAAAGCAACATATTGGAAATCCAGGTCTTAATGGAGTCTCTTTGTCTATTGAGCCATCGAACTTGTACAGTTTGCCACATTCTGGACCTCCTATAAACTTCCAAGTACAACAACAGCCTAGTAATTTGTACGGATCACCAATTGATTCGTATTCAGTCCCTCTGTTAACTGTCTCTGATCATGTTACATCGGGTTCTAGCAACAACGCGGTAGCAGCAACCATTGATGGTAAAGTTTTAGCAAACCTTTCAAATTTAGAAGCAGCAgccattttaaaacattgtccATATCACGAAGCCATTTTAAAAGCTGCCAAACTAGGTGAAAAAATTCCAGCAGAGTTAGCATCTAGCTATGTTGCTAGTTTGAGCTCTTTGGGTAACGCTTTTCAAAAGAGCCATCAGACTTTAATATCTCCGCATAACAGTTTCAACACACCGTTCCCCGGCAGTGACCAAAATTTAAATCAAGTGAATGCTCAATACTCCCAACTTGCTTCTGAAATACCAATTAGCGGAAATCAGGCTTATTCCGTACAAATTCAATCATCTGAAGATGGTAAAGGAAAATCAAATGTACCAACCATACCCCACGAACAACTACTTTCAGAAGGTCTTTTGCAAAGTATTTTACAAGCAATCGAACAACCTGCTCAAGGAAACAAACCCAAAAACAACGTAGATAACAACTTCAGCCAAACGCAATCAAACAACATTTACCAAACGAATAACCAAAATGCGCCTACTTTTAATTACCAAACGGGCGTGTCAAGTTATGACAATCTAAATGACGGTGGGTTAGTACTCCCAGCTGGATATGAACCAGTGGATAGAACAAAGAATCAAAAAGATCAAGAAATCCAAAGCACCAATCAAGATATTAAACACGTTTTACATAGAGAGATTATAAACCATGATCATGGAGATTGTGATTTAAGAGCAGACAATTCTATTACACATACCATAATAGTCCCTCCATCGAATGTAGATCACGTAGCACCCGTGGAAGAAATAGAAGAGAATGATGTCGCTATTTACTTTGGTGATGAAGCAAAAGAGGAGAGTTCCGAAAAACAAGATCCAGTCACTGAAATCTCAGTAGCGACGAGTATAAGTCCATTGTGTGGAtcagaatatatagaaaacagAAGCAATGATGGTTTTGACGATTCAGATGAAGAACCTCTTAAAGTGAAGAAAGACAAAAATAAGTCgcatgtaaaaagaaaaaagaaggaacagaATAAAACAAAACGTAAGAAACTCTCCGGTGTCGTTAGCAACGCCAGGGTGGATAAGAAATTACAACAGTTGAATGTCAGCGGTGAACATATTGAAATGGTCATTTTAACATGGAGTGAGGTGGAAGAGGAGCGTCAGAGAGCCTTAGAGAGTGAGACGTTCACTCGCCACGAGTACAAGTGTTATGACTGCGTGCTCGGGTTCAATCATAGATGTAAGCTGGAGCATCATATGAAGAAACATGACCCTGTGAGTATACACACACAGAGAGAGAGACGTACGAGACATCGCGTGCGTTGGCGCTGTCGCTGGTGCGGCGGCACGTGGTCGCGCGCGGCGGTGTGTGCCGATCACGCCGCACGCACACATCGCGCTCCACCACCCACACACACGTGCGCGCGCTGTGGACACACAGAGACATCTCTAGGTAAACTACGAAATCATATCAAAAACCACTCCGAGAGGCAGAAGTGCGAGCTTTGTGGGAAAACTTTCAGAGACAAGACGTCTTTGAAGACTCACTTATTTATTCACAAAGGGGAGAAAGAGTATTCTTGTCCTCAATGTAATAAGAAGTTCCTCTTCAAGAAGGCGATGGAGATACATCTCATAACACACGCTGCGCCCGCTCATCTCTATTGTTATCagTGCGACATGAACTTCAAGAATAGGATGTCATATAATCAACATATGAAGTACAATTTGAAACACATAGACCCGGCGAAGCTCAAatACGCGTGTAAACTCTGCGATAAGAAATTCGTGAAGGCGATACGTTTAGAAGAACACAACATGGCGGTGCATTTGAAGATAACACCCATATCCTGTCCTGTCAGCGGATGTAACTTTGCGTGCTCGTCCAAGCCAGTACTGCGCTCGCACGCACGCGCTGCGCACCGCCTCGCCGGACGAACACGCAACCACGTGTGCGACGTGTGCGGGAAGACATACACGAGTAAGAAGTCCCTGGAGGGTCACCTGCGCGCGCACGCGGGCGCCCGTCCCCTGCGCTGCGCGTCCTGCCCGGCCTCCTTCGCCTACGAGGCGGCGCTCTACAACCACAACAAACTAGTGCACCACAAGAAGACACACACACACCCGCCGTAG
- Protein Sequence
- MYSWTLLFLAVVVAEDLPSGLVTTDTQQDLIAEASQNNAQAQKREAGLSNSYGEPIPADSYGPPLNIPNVVAELPVPVYGVPETNIFLDTPPGAYGPPAPVIFPNQNYEGPPPPPVGKPKPIYGPPKFHPPKQTYGPPKPIYGPPKKTYGPPKQGPPKPNYGTPFKPPKISFPKPSYGVPKPIYGAPKPVYGPPKFSYKPSSLNVHNIQLPNLPISPPQNLGIVGASIGNVGSFNTIGTSFGNLEASVGTSLGTNFDLGSNLPAPIYGTPINSLPGNLKPKFPIPSDTYGPPGHPLGPVGPNDQLVVHDIGSIGHYGPPQPDPNPRPPHPGIPAPPTPPHVLYDGWKPIPGVSKPFVQSLENVHTLETIHNIGHAGHIETLDQYGPPPPPPIVQEVQINLDGHSLPNFNQQSQFSGAQITSGYSSVHQDALANIDLNAIVGGDSNHIDQSKTVFEAHYTENNSPQSADLVFIQNATPEKPFDTYGAPPLESLSNGPYPPSHRQQGAKGLVPPSGIYGVPPGSQYGAPPKPLPANLPIPYGSFSGGGHSIHTGGHTPRHPIKFRDSVPEGLIQQISHVTHHKDANSIDHVKQGPAYLPPPIREVKDVKQHIGNPGLNGVSLSIEPSNLYSLPHSGPPINFQVQQQPSNLYGSPIDSYSVPLLTVSDHVTSGSSNNAVAATIDGKVLANLSNLEAAAILKHCPYHEAILKAAKLGEKIPAELASSYVASLSSLGNAFQKSHQTLISPHNSFNTPFPGSDQNLNQVNAQYSQLASEIPISGNQAYSVQIQSSEDGKGKSNVPTIPHEQLLSEGLLQSILQAIEQPAQGNKPKNNVDNNFSQTQSNNIYQTNNQNAPTFNYQTGVSSYDNLNDGGLVLPAGYEPVDRTKNQKDQEIQSTNQDIKHVLHREIINHDHGDCDLRADNSITHTIIVPPSNVDHVAPVEEIEENDVAIYFGDEAKEESSEKQDPVTEISVATSISPLCGSEYIENRSNDGFDDSDEEPLKVKKDKNKSHVKRKKKEQNKTKRKKLSGVVSNARVDKKLQQLNVSGEHIEMVILTWSEVEEERQRALESETFTRHEYKCYDCVLGFNHRCKLEHHMKKHDPVSIHTQRERRTRHRVRWRCRWCGGTWSRAAVCADHAARTHRAPPPTHTCARCGHTETSLGKLRNHIKNHSERQKCELCGKTFRDKTSLKTHLFIHKGEKEYSCPQCNKKFLFKKAMEIHLITHAAPAHLYCYQCDMNFKNRMSYNQHMKYNLKHIDPAKLKYACKLCDKKFVKAIRLEEHNMAVHLKITPISCPVSGCNFACSSKPVLRSHARAAHRLAGRTRNHVCDVCGKTYTSKKSLEGHLRAHAGARPLRCASCPASFAYEAALYNHNKLVHHKKTHTHPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -