Isal002459.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000015.1:2279501-2285262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8 4.1e+02 2.4 1.4 3 22 364 383 362 386 0.90 2 13 2.4 2.1e+02 3.4 2.1 2 21 408 427 407 431 0.88 3 13 0.011 0.96 10.7 7.6 1 23 445 468 445 468 0.97 4 13 0.12 10 7.5 0.3 1 22 473 494 473 497 0.90 5 13 8.1 7e+02 1.7 0.4 2 23 518 542 517 542 0.75 6 13 0.0016 0.14 13.4 0.2 2 22 548 568 547 568 0.95 7 13 5.7e-06 0.00049 21.1 0.7 1 23 624 645 624 645 0.98 8 13 7.5e-07 6.4e-05 23.9 0.4 1 23 651 674 651 674 0.97 9 13 0.068 5.8 8.3 0.2 2 20 706 724 705 726 0.91 10 13 0.15 12 7.2 0.6 2 23 733 756 733 756 0.95 11 13 0.45 38 5.7 7.8 1 20 763 782 763 785 0.96 12 13 0.011 0.96 10.7 1.2 1 19 791 809 791 812 0.95 13 13 6.2 5.3e+02 2.1 0.1 6 23 829 847 822 847 0.79
Sequence Information
- Coding Sequence
- ATGCTCTCGCCTCACGATGACGATGATGACAGCCATTTGTGCATTAAATGCAACGCGACCATTATCGGTCTTGATACCTATGTTAAACACAGAAAACAAGGTTGTCGTAAGAGAAAAATTGATTCTAAACCGGATTCCGTTTCAATTGATCCAATTGATGCAAATTATAGCCTCGGTGCTGATGTATTCTTCCAATCTTTGGAGCTGCAAAGCAGCGTGAAAAGGTCACCTTTGTCACGATTGACGCCCCCTACACCAGTCACTAAAACTTgcgttgataaaaaaaatatactaactgTTGCATCTACATCCAGAGAAATACCGAGGATCAGTcctattgaaaataatttgagGGGTGAAGATTGGATTGGTGGTCACAGTTTACGTATAGGAAGCAACGAAGATAATCAGACTAAATTAATCAATGCTGTTGCAAACATTAGCGGGTCCGTTAAGAAAGAAACCAACACCTCTTATAATATATGTGCTAACGAACGGACTCAAATTATGCAAACAACAATTCAGTCGAAAGGTTCAGTCCAATATTGGTGTGGTCCTTGTAACCGGCGGTTAGGTTCCAGAACTATATACGAGAAACATTTGAAATCTAATTTGCACATGCGAAAAGTGCAGCCAGAACATGAGTTAGAGTTTTCAGGAAGTTTGGCACCTACTAGTAATTCTCCCTCGAAACCGAGGTCAGCTCGAGCTTCTATGTTTGTAAGCGCTGTATATTCTCCGCCTCCTAGAAAGAGAACAAAGAGAGAACCAAAACTtagtgttaaaattaataaaaagaagagAAAGAGAACATCATGCTTTATTCAATGCTCGGGTTGTAAAACACGGGTTAAAAGGCATTTAATGGGCAAACATTTAATATCCCATTATCATTTTAGGAAAGGATCTGTCATAAAGAATTATTCGTATCAACAGTTAGTTCTCAGTAACATGGATGCTATTGTACATCAGGCCCCATTTCAGTGCAGTCCATGCAAGTTTTATACAAACTGGCTTTCAAACTTTTTACAACACTGGACTTCAGAAGAACACAAGAATACAACATCATTAATGGAAGGTAAATATTGGTGttctttttgtaaaattgaatGTGAAACAACCGAAGAAATGTTCACCCACATGTCAAGTACTGAACACAGAGAAGTCGTGGCAGCTATTAATAGATCAATGCCTATTATTATACGCAAGAAGACAATAGTAAAATGTAAAACCTGTCTCTTGATTTTCCGTTACAATGCAGAAGTGAAGAACCATTGCCGTAGGACAGGACATGAACTTCCATACACTGCGACCGACATGTATCAAGAACTTCATCGATGTCATCACTGCAAGAAACAGTTCCAGTTCTCTGTATCTTTGGCAGCACATCTTAAATCCAGACATGATGATAAAGCATATTTTTGTCTCGTATGTTCAATAATGTTTGATTCTAACGAAGAAGTCAAGTTACATCGACAATCTATGGAGCACAGAGTGAAACGTATAGAAATTTTACAAGAACGTGGTTTAGTTACCAAAAAGATTACAAAGAGATGTCCATATTGCCCgcagtatataatattaaagaatattttagatCTTAGAGATCATATACAAAAAGTACATCCGAGTATTAAGAAAAAATGTCCGAAATGTGGAGAGGAATTTATTTTCTCTCAAGAAGTATCCAGGCACATTCGTTCCAATGCTTGTAAGTTACAAAAGCCCGAAGTAGCTCCGTCACCCATAAAATGGAACTGCAGTCAGTGTTTATTTTCAACTGATTCTCAAGCTGAATGCTTTTTTCACGAGGTTCTCCATTCTGAACCAATCACAGATACTACTAAAACAAAAAGGGTGGTTAAAAAGTACAAATGCCCGATTTGTCCAAAGACATTTACTAAGCCTTCGTTAAGATTGCATTTGAGACAACACACTTTTGAAAGGCcttttatttgtacaatttgTGGAGCAAATTTCACCCGTCAGTCTAGTTTGGCTAATCATACAAGGACAGAGCACACCCAGGTGCCGGAGCCCACGCTTGATACTCATCTGGAGGCTCCGCTCTTGACCGCGCCAGGAGACACTGGTGAAGCACCCGGCCGCCTCCTACAGTGCCTAAAGTGTGACAAGAAATTTGGAAAAAGATTGGCGCTGTCACAGCACGTGGTGACGTGCGCAGGCATGGAGCGGCGGTGCCCGCACGCAGGGTGCTCTTATATCGCATCTAGCGTCACTCAGCTCACCAGGCACCGTCGCGGACATggagaaattataaaacaatacgaATGTCCACATTGTCAATTTAAGACCGATAAGTCTAGTCACATGAAGAGGCACTTATTTTGTCACGAGGGAATTAAGCCCTACGCCTGTCCACACTGCAGTTTCACTTGCGGTAGTTTGGAAAACCTCCGCAAGCACGCAGTGCGCAGCGCACAGCACCGCGGCCTGCCGCTGTATACGTGTCGCGACGCACCCTGCGCCTTCACCACCGACCGCGCTGCTGAACTGCGCCGCCACCTCGCCGATGCTCACGCCGAGCACTACGACGCGCGTACCGCACTGCGAGCCGTGCAGACCCACCTCATGACTGTAGACCTTAGATAG
- Protein Sequence
- MLSPHDDDDDSHLCIKCNATIIGLDTYVKHRKQGCRKRKIDSKPDSVSIDPIDANYSLGADVFFQSLELQSSVKRSPLSRLTPPTPVTKTCVDKKNILTVASTSREIPRISPIENNLRGEDWIGGHSLRIGSNEDNQTKLINAVANISGSVKKETNTSYNICANERTQIMQTTIQSKGSVQYWCGPCNRRLGSRTIYEKHLKSNLHMRKVQPEHELEFSGSLAPTSNSPSKPRSARASMFVSAVYSPPPRKRTKREPKLSVKINKKKRKRTSCFIQCSGCKTRVKRHLMGKHLISHYHFRKGSVIKNYSYQQLVLSNMDAIVHQAPFQCSPCKFYTNWLSNFLQHWTSEEHKNTTSLMEGKYWCSFCKIECETTEEMFTHMSSTEHREVVAAINRSMPIIIRKKTIVKCKTCLLIFRYNAEVKNHCRRTGHELPYTATDMYQELHRCHHCKKQFQFSVSLAAHLKSRHDDKAYFCLVCSIMFDSNEEVKLHRQSMEHRVKRIEILQERGLVTKKITKRCPYCPQYIILKNILDLRDHIQKVHPSIKKKCPKCGEEFIFSQEVSRHIRSNACKLQKPEVAPSPIKWNCSQCLFSTDSQAECFFHEVLHSEPITDTTKTKRVVKKYKCPICPKTFTKPSLRLHLRQHTFERPFICTICGANFTRQSSLANHTRTEHTQVPEPTLDTHLEAPLLTAPGDTGEAPGRLLQCLKCDKKFGKRLALSQHVVTCAGMERRCPHAGCSYIASSVTQLTRHRRGHGEIIKQYECPHCQFKTDKSSHMKRHLFCHEGIKPYACPHCSFTCGSLENLRKHAVRSAQHRGLPLYTCRDAPCAFTTDRAAELRRHLADAHAEHYDARTALRAVQTHLMTVDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034137;
- 90% Identity
- -
- 80% Identity
- -