Basic Information

Insect: Ithomia salapia
Gene Symbol: -
Assembly: GCA_028829205.1
Location: JAPOND010000189.1:1607649-1610356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0054 0.46 11.7 1.5 1 23 291 314 291 314 0.92

2 12 0.12 10 7.5 4.5 1 19 332 350 332 354 0.92

3 12 8.5e-05 0.0073 17.4 3.2 2 23 360 381 359 381 0.96

4 12 8.5e-05 0.0073 17.4 0.7 1 23 385 408 385 408 0.95

5 12 0.036 3.1 9.1 2.0 1 23 411 433 411 433 0.97

6 12 0.00041 0.035 15.2 0.3 2 23 512 533 511 533 0.96

7 12 0.069 5.9 8.2 0.3 2 23 553 575 552 575 0.95

8 12 9.7e-07 8.3e-05 23.5 4.1 1 23 581 603 581 603 0.98

9 12 0.00052 0.045 14.9 2.8 1 23 608 630 608 630 0.98

10 12 0.0048 0.41 11.9 2.9 2 21 637 656 636 659 0.93

11 12 2.7 2.3e+02 3.2 2.5 1 19 666 684 666 685 0.88

12 12 0.072 6.2 8.2 2.5 3 19 698 714 697 719 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0054	0.46	11.7	1.5	1	23	291	314	291	314	0.92
2	12	0.12	10	7.5	4.5	1	19	332	350	332	354	0.92
3	12	8.5e-05	0.0073	17.4	3.2	2	23	360	381	359	381	0.96
4	12	8.5e-05	0.0073	17.4	0.7	1	23	385	408	385	408	0.95
5	12	0.036	3.1	9.1	2.0	1	23	411	433	411	433	0.97
6	12	0.00041	0.035	15.2	0.3	2	23	512	533	511	533	0.96
7	12	0.069	5.9	8.2	0.3	2	23	553	575	552	575	0.95
8	12	9.7e-07	8.3e-05	23.5	4.1	1	23	581	603	581	603	0.98
9	12	0.00052	0.045	14.9	2.8	1	23	608	630	608	630	0.98
10	12	0.0048	0.41	11.9	2.9	2	21	637	656	636	659	0.93
11	12	2.7	2.3e+02	3.2	2.5	1	19	666	684	666	685	0.88
12	12	0.072	6.2	8.2	2.5	3	19	698	714	697	719	0.92

Sequence Information

Coding Sequence: atggaggaTGAGACGATTAACACCAACTCTGATCCCTTGTACCCGATACTGCTTATACCCAAGAAGTGTACGACTTTGGAGACCAACTGTGAGGCGACGGATAACGtgtttatagatttaaatataacatccCCGGACACTGAGGGTAACGAAATGTGTATCTACTCAGGATTCTGTAACGTTAAATTGATAGATAGTTACGATGTAAATATTAACGAATTGGATTCCAACAGTCAGTCCTCAGATTCCAATGATCATAATGATATCCCAGTTATAGTGAGTGAGGCGAGTCAGTACCCTACGTACAGTCAGTCCCAAGTGTGGATAGACCCAGCCAGGAGCCCCTACGTGTATAACACCTATGATGCGGTGGAGTCGCAGGAACGATACTCAGTGTATAGCCAAACCCTCGCAAGTCACATCACAGTGGAAcatcataatacatatattactcAGAATGTGTACAACAACAAGGAATCAACTCCATTTTCTCCATTGGAAGAGTTTGGGCataaaaaatttagaaaaaatctaTCTAATGAAACAAATCATCATGATTTGTATGAAGATGATGAGTTTGAGTGTGGGGTCCTACTCTCCCAGCTGCCGGAggaaataatgaatgaaaaagCCCGGGAGGAGTTAAAGTTAATAGATTTGCAGAATGAGAATGATGCTTTAAAACAGCTTATGTCATCTGATATTCAGTCCTTGTCCAAGCAGCAGAAGACAATACTTTATCTGGGCCATGACTCGCATTACGGCCAGACAATACAGAAGATTGCTGTCAATGATCCAACTCTAGAGTGTATTGATAATAACATTGATAACGAAATTATTGTAGaaaGCAGTCAGCCAAATCAAAAGAAATATCAGTGTGACAAATGCAAACAATTATTTGACCAGCTCACCACTTTCAAGCAGCACATGGTCGGTAGCCATAGGAGTCCTAGAATCAGCGCACACAGTGCAAAACCTATCAGCGAAATGAAGTTTATGTGCACAGAATGTGGCAAACAtcttaaaaatcaaaaaaagttTGAACTACACTGCCTTGGTCATGGGAATCCAGAACTAGAATGTGATAAGTGCCACAAGGTATTTGCTTCTAAATTTACCCTCCGGAATCACTTCAAAATACATCAACGGAAGTATCCATGTATGTATTGTTCCAAGACTTATTCTAGTTCAGAAGAATTGAGGTCACATAAGgcgaaaatacattttatatttatgtgtgATTTGTGTAACTTCAccacaacaaaatattcagatttagacttacataaacaaaaacatgTCAATGAGTTAGAATTAAGTGAGTCTGACATCACTTTATCACTCAATGATGATATAAAAAGTGATAGTGGAACCTTATCACCATCACCTGAAGATTATATCATTAAGTCTGATGATATAGATGGACAATtagatgaaattaaaaaagctgATTCTGTAATTGCAAAGGTgatgtcaaataaaatatttttgctccATGCTAAAAAGGCTCGacgtcacaaaaaatataaaaagACTTGTGAAGTATGTTTAAAAACCTTCGATCGCATCGGCGACCTGAAACGACACCTTATCGAGCACGTAATCCGAAGCACCCTCGCCAAAACACCGGTCAATAAAAACGGAAACCTTACCATACAATGTGAAGTCTGCCAGGATGAAACTTTTTCAAAGGTAGATAAATACAAAGCTCATTTGCGAGAGCACGCTAAACTTACTTTATATAAGTGCACTTTCTGTGATAAATCATTTAGCGATTCAAGCAACTTCTCGAAGCACAAGAAAATTCACGGCACAACTTTCTTTCAATGCGATCTTTGTCAGCGAAAGTTCAATTCCAAAAAGATGATAAAGCAGCACATGGAATATCACAACAACAATTCGCCGATTCCATGCCTTTATTGTGATAAAAAGTTCCATTTTCCCTCCATGTTAAATAAACACGTTAAATGCGTCCACAATCGCGAAATGTCTAGATTTAGGTGTAGGTTTTGTCATGAATATTTCAAAACGCTTAAAGATAAGTGGGATCATGAGTGGAGAATACATAATGTGAGGAAAATAATCGTCGATTGCCTTATTTGTGACTCAAAATTTCGAAAATATTCGGAGTTAAAAAGACATTGTAACGATGTCCACCATTTGGATATACCTCCTGCCAAAAAGCTATTGCGTAAACGGAGATCTTTGTAA
Protein Sequence: MEDETINTNSDPLYPILLIPKKCTTLETNCEATDNVFIDLNITSPDTEGNEMCIYSGFCNVKLIDSYDVNINELDSNSQSSDSNDHNDIPVIVSEASQYPTYSQSQVWIDPARSPYVYNTYDAVESQERYSVYSQTLASHITVEHHNTYITQNVYNNKESTPFSPLEEFGHKKFRKNLSNETNHHDLYEDDEFECGVLLSQLPEEIMNEKAREELKLIDLQNENDALKQLMSSDIQSLSKQQKTILYLGHDSHYGQTIQKIAVNDPTLECIDNNIDNEIIVESSQPNQKKYQCDKCKQLFDQLTTFKQHMVGSHRSPRISAHSAKPISEMKFMCTECGKHLKNQKKFELHCLGHGNPELECDKCHKVFASKFTLRNHFKIHQRKYPCMYCSKTYSSSEELRSHKAKIHFIFMCDLCNFTTTKYSDLDLHKQKHVNELELSESDITLSLNDDIKSDSGTLSPSPEDYIIKSDDIDGQLDEIKKADSVIAKVMSNKIFLLHAKKARRHKKYKKTCEVCLKTFDRIGDLKRHLIEHVIRSTLAKTPVNKNGNLTIQCEVCQDETFSKVDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKMIKQHMEYHNNNSPIPCLYCDKKFHFPSMLNKHVKCVHNREMSRFRCRFCHEYFKTLKDKWDHEWRIHNVRKIIVDCLICDSKFRKYSELKRHCNDVHHLDIPPAKKLLRKRRSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00419229;
90% Identity: iTF_00959653;
80% Identity: -