Basic Information

Insect: Ithomia salapia
Gene Symbol: -
Assembly: GCA_028829205.1
Location: JAPOND010000136.1:1150419-1154077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9e-05 0.0078 17.3 0.6 1 23 10 32 10 32 0.98

2 16 0.016 1.4 10.3 0.1 2 23 58 80 57 80 0.93

3 16 0.00058 0.05 14.8 1.4 2 23 103 125 102 125 0.94

4 16 4.2e-06 0.00036 21.5 1.3 3 23 133 154 132 154 0.98

5 16 0.036 3.1 9.1 0.8 3 23 161 182 159 183 0.92

6 16 0.13 11 7.3 4.5 1 23 186 209 186 209 0.96

7 16 0.00027 0.024 15.8 1.0 2 23 216 238 215 238 0.96

8 16 0.00032 0.027 15.6 3.5 1 23 244 266 244 266 0.97

9 16 0.43 37 5.8 5.1 1 23 324 346 324 346 0.98

10 16 1.1 95 4.4 0.1 2 23 371 393 370 393 0.92

11 16 0.018 1.5 10.1 3.0 5 23 418 437 415 437 0.93

12 16 0.37 32 5.9 4.2 3 19 445 461 443 464 0.92

13 16 0.0074 0.63 11.3 0.7 2 23 472 493 471 493 0.94

14 16 3 2.6e+02 3.1 4.0 1 23 497 520 497 520 0.94

15 16 0.0049 0.42 11.8 1.0 2 23 526 548 525 548 0.93

16 16 0.23 20 6.6 1.1 2 23 555 576 555 576 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9e-05	0.0078	17.3	0.6	1	23	10	32	10	32	0.98
2	16	0.016	1.4	10.3	0.1	2	23	58	80	57	80	0.93
3	16	0.00058	0.05	14.8	1.4	2	23	103	125	102	125	0.94
4	16	4.2e-06	0.00036	21.5	1.3	3	23	133	154	132	154	0.98
5	16	0.036	3.1	9.1	0.8	3	23	161	182	159	183	0.92
6	16	0.13	11	7.3	4.5	1	23	186	209	186	209	0.96
7	16	0.00027	0.024	15.8	1.0	2	23	216	238	215	238	0.96
8	16	0.00032	0.027	15.6	3.5	1	23	244	266	244	266	0.97
9	16	0.43	37	5.8	5.1	1	23	324	346	324	346	0.98
10	16	1.1	95	4.4	0.1	2	23	371	393	370	393	0.92
11	16	0.018	1.5	10.1	3.0	5	23	418	437	415	437	0.93
12	16	0.37	32	5.9	4.2	3	19	445	461	443	464	0.92
13	16	0.0074	0.63	11.3	0.7	2	23	472	493	471	493	0.94
14	16	3	2.6e+02	3.1	4.0	1	23	497	520	497	520	0.94
15	16	0.0049	0.42	11.8	1.0	2	23	526	548	525	548	0.93
16	16	0.23	20	6.6	1.1	2	23	555	576	555	576	0.86

Sequence Information

Coding Sequence: ATGCCGTTTAGATGGTTGAGAAGTTCCTACAGATGTTTTTATTGCTATGAAGTATTTAAGGAACCCAACGATTTGAAATCCCACCAAGCCGTTCACGACATCAGAGACGAAATATGCCATGCGATAGAAAACTTTTGGGAACCAGAAGTTTATGTTGACATTTCTAAAATGTCATGTAAAATTTGTTCAGAAAGTACCACAGATTTGTTTCAATTGGTCGACCATCTTATTTTAGAACACAACatcgattttaataaagatgttGGATTGGGCATGACTGCCTATAAACTGGAGGACATATCAGTAAGTTGTGTGATTTGCGACCAAAGGTTTAGAACTTTTAGTCACTTGCTAGTGCATTCAAATAGAGATCATAAAGGCTGGTCGGAAGTACTTTGTGATATTTGTGGCCAGCATTTCAGAAGCGCGAAATATCTCCGACAACATATTAGAACCATCCATTCGAATGAATCTGTTATTTGTGCTGTGTGCGGACTGAAGATATTTAGTAAGAACAAGCTCAGAACGCATATGCAAAACATTCATCATCATAAATACAAGTGCTTTAAATGTTCAGAGCAATTTGAAACCCATTACAAAAGATCACAACACATGATGCTGGTTCACAAGAGTCGAGAACTAGTCAAATGTTCATGGTGCTCTCGAACCTTTGTTTATCGGAGTACCATGATGCGGCATGTTAGAGAAACGCATTTACAAGAAAGGACGTTTATTTGCAGCATTTGTGGATGGCGGTGCTTCTCTCAACATGGTCTGCAGAAGCATTTGCTGAAGCACAGAAGAAATGAAGCAGATAAAGACTTACTTCAGACAGAGAAACAAGTATCGACAGACCAGTCTCTAGTGCCAAAGAAGAAGGAATCTTACCTGCTGGATCAAATGAGAAAAAACACGGTCCAACTCCTCAACAATTCGACAATAATGCCATTTAGATGGTTATGGAGTTGTTTCCGATGTTTCTTCTGTTACGAAATGTTCAACACAcctatgaaattaaaatgtcatCAAGAAACTCATGGAAAAAACGAGATCCAGGATGCTTTGAAGAACTATTGTGAACCATTGGTCTATGTCGACGCGTCACTCATATCATGCACTATTTGTCAAACGAACCTAGACGATATCTTCCAATTGGTTGATCATTTGGTAAAGGAGCATGAAATAGTGTTCAATAGAGACATAGGCATCAATATGATTCCCATAAAGTTAAACGAGACTCCGGTATGCATCTTTTGCGACACAAATTTCAAAACCTTCAACCATTTAGTAACACATATGAAGAAATACCACAAAGAATGCTTCAACTCCTTCTGCTTCAAATGTAAGAAGAATTTTTCAAGTTATAAAGACTTCTGCGAACATGCAAGCAATCGAAATCgggaagaaaatataaaatgttctgaTTGTGGATTAGTTTTAAACTATCATAGCCTGAAAAATCATATGAATGATGTTCATAGTAAGAGGTACAAATGTCTGAGATGTTTTGAGTACTTCCCAACACATTATAAGAGGTCGAACCACATGGCAGAAAAGCATAATCGCGACAAGATCAAATGCACTTATTGTTCTAGAACGTTCATATTCCAGAGCATTTTACTCCGTCACGTGAAAGATACTCATCTGAAAGAGAAGAATGCGGTGTGTGATGTTTGTGGATGGAGATCGTTTAGTAACAGAGAGTTACTCTGCCACATGGAGAAACACTCaacAGCAAATGGAAAGAAATTTGAAATCTCAAAGAAAAAAACAGATAACAAAGATATTGACCGCCATTGTGGATTTCTCCACTATAATGCCTTTCAGATGGGCGGCAAACAAGTTTTTATGCTTTTTCTGTTGTTGTTCATTCATAGACTCCTCAAAACTTAA
Protein Sequence: MPFRWLRSSYRCFYCYEVFKEPNDLKSHQAVHDIRDEICHAIENFWEPEVYVDISKMSCKICSESTTDLFQLVDHLILEHNIDFNKDVGLGMTAYKLEDISVSCVICDQRFRTFSHLLVHSNRDHKGWSEVLCDICGQHFRSAKYLRQHIRTIHSNESVICAVCGLKIFSKNKLRTHMQNIHHHKYKCFKCSEQFETHYKRSQHMMLVHKSRELVKCSWCSRTFVYRSTMMRHVRETHLQERTFICSICGWRCFSQHGLQKHLLKHRRNEADKDLLQTEKQVSTDQSLVPKKKESYLLDQMRKNTVQLLNNSTIMPFRWLWSCFRCFFCYEMFNTPMKLKCHQETHGKNEIQDALKNYCEPLVYVDASLISCTICQTNLDDIFQLVDHLVKEHEIVFNRDIGINMIPIKLNETPVCIFCDTNFKTFNHLVTHMKKYHKECFNSFCFKCKKNFSSYKDFCEHASNRNREENIKCSDCGLVLNYHSLKNHMNDVHSKRYKCLRCFEYFPTHYKRSNHMAEKHNRDKIKCTYCSRTFIFQSILLRHVKDTHLKEKNAVCDVCGWRSFSNRELLCHMEKHSTANGKKFEISKKKTDNKDIDRHCGFLHYNAFQMGGKQVFMLFLLLFIHRLLKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -