Basic Information

Insect: Ithomia salapia
Gene Symbol: -
Assembly: GCA_028829205.1
Location: JAPOND010000136.1:806637-811506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.29 25 6.3 0.0 1 23 229 251 229 251 0.95

2 10 0.46 40 5.6 0.2 2 21 279 298 278 299 0.93

3 10 0.00049 0.042 15.0 0.4 3 23 322 342 320 342 0.96

4 10 7.7e-06 0.00066 20.7 0.8 1 23 346 368 346 368 0.97

5 10 0.16 14 7.1 0.4 1 23 373 396 373 396 0.93

6 10 0.16 14 7.1 0.4 1 23 402 425 402 425 0.92

7 10 0.00021 0.018 16.1 1.3 1 23 432 455 432 455 0.98

8 10 4.1e-05 0.0035 18.4 3.6 1 23 461 483 461 483 0.98

9 10 1.6e-05 0.0014 19.6 6.6 1 23 489 511 489 511 0.98

10 10 1.7e-06 0.00015 22.7 1.0 1 23 517 539 517 539 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.29	25	6.3	0.0	1	23	229	251	229	251	0.95
2	10	0.46	40	5.6	0.2	2	21	279	298	278	299	0.93
3	10	0.00049	0.042	15.0	0.4	3	23	322	342	320	342	0.96
4	10	7.7e-06	0.00066	20.7	0.8	1	23	346	368	346	368	0.97
5	10	0.16	14	7.1	0.4	1	23	373	396	373	396	0.93
6	10	0.16	14	7.1	0.4	1	23	402	425	402	425	0.92
7	10	0.00021	0.018	16.1	1.3	1	23	432	455	432	455	0.98
8	10	4.1e-05	0.0035	18.4	3.6	1	23	461	483	461	483	0.98
9	10	1.6e-05	0.0014	19.6	6.6	1	23	489	511	489	511	0.98
10	10	1.7e-06	0.00015	22.7	1.0	1	23	517	539	517	539	0.98

Sequence Information

Coding Sequence: ATGGATAACATAATGGTAGAATCTCTACCACTTCTTGGTATTTGTAGTTTATGTCTGGCCGAAGGAGTTGTAAAAAGTATGATTTTAAAGGAATCTAATGATAGCAACAGAGAAACTTACACGGAGactcttttaaaatgtttttctatcgATATATTGATGCTAGAGCTGGATGATACAAAGTGTGTGATTTGCAGCTTATGTATCAAGCAGTTGCAGGCCTGTCTCAAATTCAAAGAACAAGTGCTTGCCTCCCTGAAGAATTTAGAAGCCAGTGCAAGAATCAAAAaaGCCGACCAATCATATGAAgacattaaaaatgaaaataatgaaattaatgATACAAATGTGATAACTTTGGAGAATGTTAAGGAAGAACTAGCAACAGCAATGGGATTATCAAAGGATaactttgatgatgatgatacAGatGTAAAAAGGATTCTcttcacaaatataaaacaggaaTCCTTAGACGGAAGTGACTTTGATGATCATgTTTTAAACGATCTGGTTATAAAGAAAGACCCAGATGACTACAGACCGAGACGTGCTAGAAAGAAGACAATATCCACCAGCAAAAAGAAAGTCTCATATTCTGTCAAAAAACAAGcagatataaaagaaacagaGAGAATGCTGGCTTCTGGTTTATTTCCATTTAAAATGGGAAAGAATCAAATGTATTCTTGCGCTATTTGTCCAGAAAAATCAACAATTCTTGATGATATTAAGAATCACATAACCGGACATAGTATTACAAACATTAGCGTTGCCTTCAAGAAGATGATAACATCGAATCTTCAACGATTTTACAAATCAGCATCAAAACTACGATGTAAATACTGCAAGTTGGACATTCCAGACTACGACGTACTAAAACACCACATAAACTCATGTGTTAGTGTCAATACAAACAGATGTAACAACCTCCCATTCAAACTCGAAAAAGATCAACTTGATTGTCCAATATGTCAGAAAAAGTTTCTAAATTTCGTCAGCTTAAACACACACATGAACGTACATTATCCAAATCATATTTGCGATAGTTGTGGAAAAGCCTTTGCATCAAAAGCCAGATTAAGAGGTCACATGAGAACGCACGAGATCGGAGACTTCCCGTGTAGATACTGCGACGCAATCTTCGATAGAGTCACTAAACGAGAAAACCATGTGTCAAAAGAACATAAATCTGGTATCAGATACGCCTGCAAGCGCTGTAACATTTCGCTCACATCATTCTACGCTCGTCAAAAACATCTAGCAGAGGTCCACAATGAAGAACTCAAGCGATATAAATGCAAGGCCTGCACCCAAAGTTATATAACTCCAGGACATCTATCAAGCCATGTTCGAAGAGATCACTTAAACGAAAGGAACCACAAGTGCAACAAGTGTGATTTGGCATTTTATACTCGAAATTCGTTAAAGATGCATATGATAAAACATGATGGGGAAAGAATTCATACTTGCAACATCTGCCACAAGTCCTACCAACGGAAGAAGACCTTGCGAGAACACATGCGTAttcataataatgataaaagatTTGTCTGTCCTGTCTGTGGACGCGCGTTCACCCAAAAATGTACACTTAAAGGTCATTTGAAGGTTCACGAACGGAAATCGGATCTAGATGAGTCGGCACCGTCAGTACATCTAAGTTAG
Protein Sequence: MDNIMVESLPLLGICSLCLAEGVVKSMILKESNDSNRETYTETLLKCFSIDILMLELDDTKCVICSLCIKQLQACLKFKEQVLASLKNLEASARIKKADQSYEDIKNENNEINDTNVITLENVKEELATAMGLSKDNFDDDDTDVKRILFTNIKQESLDGSDFDDHVLNDLVIKKDPDDYRPRRARKKTISTSKKKVSYSVKKQADIKETERMLASGLFPFKMGKNQMYSCAICPEKSTILDDIKNHITGHSITNISVAFKKMITSNLQRFYKSASKLRCKYCKLDIPDYDVLKHHINSCVSVNTNRCNNLPFKLEKDQLDCPICQKKFLNFVSLNTHMNVHYPNHICDSCGKAFASKARLRGHMRTHEIGDFPCRYCDAIFDRVTKRENHVSKEHKSGIRYACKRCNISLTSFYARQKHLAEVHNEELKRYKCKACTQSYITPGHLSSHVRRDHLNERNHKCNKCDLAFYTRNSLKMHMIKHDGERIHTCNICHKSYQRKKTLREHMRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHERKSDLDESAPSVHLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00461825;
90% Identity: iTF_00959640;
80% Identity: -