Isal002283.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000013.1:4519345-4520727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00062 0.053 14.7 2.1 1 23 106 129 106 129 0.95 2 10 3.3e-05 0.0028 18.7 2.5 3 23 138 159 136 159 0.94 3 10 0.081 6.9 8.0 5.3 2 23 167 189 166 189 0.95 4 10 2.6e-05 0.0023 19.0 0.4 2 23 197 219 196 219 0.94 5 10 0.012 1 10.6 8.2 1 23 226 249 226 249 0.93 6 10 0.0017 0.14 13.3 5.3 1 23 255 278 255 278 0.94 7 10 6.3e-05 0.0054 17.8 0.3 2 23 286 307 285 307 0.97 8 10 0.0012 0.1 13.8 2.2 2 23 315 337 314 337 0.96 9 10 0.00017 0.014 16.5 3.5 2 23 344 366 343 366 0.94 10 10 4.1e-05 0.0035 18.4 3.9 1 23 376 398 376 398 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACATTTATCAGGAACCAAAAGTAGAAGAGGAGATGTATCCTCCGAAGCTGGAAAACCACTTTCTAGATCCAAAAGAAGAATCCTTCTCTTCAACAATGCCGGAGAACTATGCAATACCCAAACCTGAAGAAGGAGAGTTCGATCCACAAATAGATATGACGATACCCCGCCCTGGACCCATGCCAAACCGACCACCAACAAAGTTCGTCAGCGTCACAAGCGCAGCTCTCACTGAAGAGCAAAGGGCCATGTACGAATCTGTTCTGTCAACTTGGAAGCCGATCATGTTCCCCAAGCGCACCAAGAGATACATCTGCATGAAATGTAACAAAGAGTTCAAGAATTACCAGAATTTATACTTACACACAACAAGGGTCCATTCTTCGGAAGAGTCGGCAGTCATCTGCGATATTTGTgacaaaacattcaaaaataagCACTATTTGTACATGCATAGAATGAACAAACATTACTCTGATTCCGAGAAGTGCTATTGCCAATTTTGTCTTCAAGAATTTCGGACGAGACGAGCTTTACACATGCACATCAAACGTATTCATCCAAATACGCTGCCGGAAATCAAATGTCCGGAATGCGGTAAGGAGTTTGCCGTACCGTACAAGTTACGGTACCACATCGAGAACTGCCACCGTCCTGATAAAGAAAAGTACAAATGCCATATCTGTCAAAAGCTATACAAAAGTCATTTGAATCTGAACAGACACCTTCACTTCCAACACTCGCAGGTCGAGAGACACCCATGCGTATTTTGTCCGATGACTTTCAAATCTCGACACCATATGAAGAGGCACATCTTAAACATTCATCCGCCCCTCGAGTCCAAGGTTACCTGCCCAGAATGCTTAAAAGAGTTCAAGAACGACCAGTACTTAAAAGAACACATGCAAGTCCATACATCTATGGAGAAAAAAGTTAAATGCGATCTTTGCGACAAATTCTTTCATTCAGCAGTCCGTTTAAAGAAGCACAAGAAAATTGTGCATCCGAATAAACCTAAAATAAGATGTGAAAAGTGCAATAAGGAGTTCGCTCACGCGCATTATCTGCGACGTCATAACAACTCAGTGCACGTAGAAGTAGATGAGAGCAACTATCAACATGAATGCGACCAATGCGGGAAGAAATTCAAAATCAAACGCTATTTAAACAACCACTTGCAGAGGCACGAACAGCAGCATCTGAAGCGTATCTCGCAAATGGTCAAAACAGTTATGGACGACGGAGAGGCTACGGATAAATCAAAGAGGCGGGGAAGACCTCGTAAAGCGAGAAAGGAAATCGAGTTTATCAAATGTGAACCTGTCTCCTCCAGCACCGACTCGGATTCCGGCGAAACGGATTCCGAGTCGGATTAA
- Protein Sequence
- MEDIYQEPKVEEEMYPPKLENHFLDPKEESFSSTMPENYAIPKPEEGEFDPQIDMTIPRPGPMPNRPPTKFVSVTSAALTEEQRAMYESVLSTWKPIMFPKRTKRYICMKCNKEFKNYQNLYLHTTRVHSSEESAVICDICDKTFKNKHYLYMHRMNKHYSDSEKCYCQFCLQEFRTRRALHMHIKRIHPNTLPEIKCPECGKEFAVPYKLRYHIENCHRPDKEKYKCHICQKLYKSHLNLNRHLHFQHSQVERHPCVFCPMTFKSRHHMKRHILNIHPPLESKVTCPECLKEFKNDQYLKEHMQVHTSMEKKVKCDLCDKFFHSAVRLKKHKKIVHPNKPKIRCEKCNKEFAHAHYLRRHNNSVHVEVDESNYQHECDQCGKKFKIKRYLNNHLQRHEQQHLKRISQMVKTVMDDGEATDKSKRRGRPRKARKEIEFIKCEPVSSSTDSDSGETDSESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01092400;
- 90% Identity
- iTF_00419223;
- 80% Identity
- -