Isal002782.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000017.1:2492121-2494859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0018 0.15 13.2 4.1 1 23 154 177 154 177 0.98 2 18 4.1e-05 0.0035 18.4 1.0 1 23 186 209 186 209 0.96 3 18 0.031 2.7 9.3 0.8 2 23 222 244 222 244 0.97 4 18 0.00082 0.071 14.3 1.1 1 23 253 276 253 276 0.96 5 18 3.9e-05 0.0033 18.5 1.3 1 23 288 311 288 311 0.97 6 18 4.3e-05 0.0037 18.3 0.9 2 23 340 362 339 362 0.97 7 18 0.0013 0.11 13.6 1.2 2 23 372 394 371 394 0.96 8 18 0.11 9.4 7.6 0.7 2 20 399 417 398 419 0.89 9 18 8.5e-05 0.0073 17.4 1.1 2 23 424 446 423 446 0.96 10 18 0.037 3.2 9.1 2.1 3 23 456 477 455 477 0.95 11 18 0.027 2.3 9.5 1.9 1 23 482 505 482 505 0.92 12 18 0.00061 0.052 14.7 1.0 2 23 516 538 515 538 0.97 13 18 0.038 3.3 9.1 2.9 1 23 564 587 564 587 0.93 14 18 5 4.3e+02 2.4 0.7 2 23 594 615 593 615 0.79 15 18 0.004 0.34 12.1 1.6 2 23 621 642 620 642 0.97 16 18 2.4 2e+02 3.4 2.0 3 23 650 672 648 672 0.92 17 18 0.008 0.69 11.2 0.1 1 23 708 730 708 730 0.97 18 18 0.19 16 6.9 2.0 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- atgtcaataaaaaCTGATGTCAAAgacattaaaattgaaaaaaatgatGAAGATAGGAAAGATCCTACAACATTCTTACCTGAAGAACCAATGACATATGAAATTAAAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCCGTTTAAAGATATTGAAGAAAAGGTTCCTTTAACCACTGTGACCATGTTTGATCCAACATTGGATATAAATTCAGAGACAGTTTTGGATCCAGAAGTCAATATAAAGGTGGAAAATATAGAAGTTGAGCTGGATTTCAATGATTTTGCAAATGATAACGGATTAATGTTAGAGGGACCACAAAGTGAAGATAGTCAAGAACCGGCTGTGAAAATTGAGGATCAAAGTCATGAAGCAGTGCTTTTAACCTTTGAAAGTATAATCCATGACAAAAATGTCTTAGGTTTTGGTCCAGTGTCTGCCCCAGCAACGAATTACGTGTGCAAAGTCTGCCATCTAGTCTTTCAGTCTACTAAAACACTTAGGATGCATCAGAAAAGAAAGCATAAAGCTTTCCGAAAATCCTTCAAGCATATTTGTGATTATTGTGGGATGTCGTACGAACAAAAGAATAGTCTTGTCGCCCATATCAAGAGAAAACATGGACCAAATGCGGTGCCTGATGATGGAGAGGAAAGAACTTGTGATGTTTGTGCGTTGGTCTTCAAAGGAATGACGAGATTACGGATGCATATGAGACGAAAACACGGATCTTTCGAAGAATCTTTTAAACATGTTTGCCAAGAATGTGGCCTCACGTATGACAAGTATAGAAGCCTCATAGTGCACATACAAAGAAAACATTCGAACGATACAAAACCTGTACTGGACACGTGGTATAACTGTCCATTTTGTCCgaaagtttttacaaaaaggGAAACTTACGCCAGACACGTCCAAAGAAAACATCGAATAAGTGATGAAGATGACATTAAACCAGATGAAAATCCTGATGATTTAGAAAATTGTAAAAACGAAGCGACAGGTGAAGTTACTTGTAAAGAATGTCCACTAGTCTTTTCGTCCTTAACCTTCCTCAAATTGCATATGAGGAGAAAGCACAACGCACTCAAAGAAGATTTTAGACTTAAATGTAGGATTTGCAATTTGTCATATGATAAAATAGAAAGTTTAAAGCGGCATGTGCGAAGGAAACATGATAAAAGTTCTTATTGCGATGTCTGCGACAAACAGTTTGAGACTAGAGAAGTATATCTTACTCATACGCACAAAAGAATAGTTCAAGAATGTTCCGTCTGCGGATTGATTTTCGCAACTAATCGAGGTCTTTGTAAACATTTACGAAGTACACACAAAATCGAGCTTCCCAAGACTGTCTTCTGTGATTTATGCAACGAAAGTTTTCACGACAAACGACAATTAAAACCTCATTATATGAAAGTACACTTAAAAGCTTCCTATACTTGTATTTTTTGCAAGAAGGTTTTTAAAGCAAAAGAAAGTTATCGGCGCCACGTTCTTCTCAAACATccagtaaataaacaaaatacatcaTTACAAAAATGTGATCAATGTTCGGAAAATTTTGCAGATGAGTTTGAATTGTGCAAACACATTAATATGGCGCACAGGAAACAGCCGGGTGAAATAGGTCCTCCAACTTTGATAGAAATTAAAAAGGAAGAAGTAGACATACTAGAAACATTCCATTGCACAAAATGTTCAGACACTTATAACAATTGGGATCAACTAAAATTACATTATGAGCAAAATCATTTGGCTGTTTCTGAAACCCAGTGCCAAATTTGCGGAGAACTTGTGCCGGGTAACGAACTACAAAAGCACATAAAAAATGTCCACACAGATTCGTCAGTTCGATGTAAATATTGTGAATTCCAAACTACGAATCGTGCAAGTATGACTCAGCACATGTTAAGGCACAAGAACGCGACAACTTTGCACTGCGATTTCGCcgattgtaaatataaaacgttttatgaAGGTGCCATGGAGAAGCATAAGAGGAGACACAGAGACCAGGGAGTTAAACTACAATGTTCTCAGTGTCCCTTCCAAACCATGGgcaagtatatattaaaataccatGAAGAAGCTCATGCTACGGGCAGGAAGCGGTACTCGTGTGACCAGTGTGACTACGCCACCATACTACCCGCTAACTTAGTTCAACATAGATACAAACATTCCTCAGAGAAGAGGTTCAAATGTGAAGTTTGCCCGTTCGCTACAAAGTACAATACATCGTTGCGTTTCCACGTTAAAAAGAAACATTGTGATCTCCCAACATTCAGTTAA
- Protein Sequence
- MSIKTDVKDIKIEKNDEDRKDPTTFLPEEPMTYEIKAXXXXXXXXXXDPFKDIEEKVPLTTVTMFDPTLDINSETVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEDQSHEAVLLTFESIIHDKNVLGFGPVSAPATNYVCKVCHLVFQSTKTLRMHQKRKHKAFRKSFKHICDYCGMSYEQKNSLVAHIKRKHGPNAVPDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCQECGLTYDKYRSLIVHIQRKHSNDTKPVLDTWYNCPFCPKVFTKRETYARHVQRKHRISDEDDIKPDENPDDLENCKNEATGEVTCKECPLVFSSLTFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKSSYCDVCDKQFETREVYLTHTHKRIVQECSVCGLIFATNRGLCKHLRSTHKIELPKTVFCDLCNESFHDKRQLKPHYMKVHLKASYTCIFCKKVFKAKESYRRHVLLKHPVNKQNTSLQKCDQCSENFADEFELCKHINMAHRKQPGEIGPPTLIEIKKEEVDILETFHCTKCSDTYNNWDQLKLHYEQNHLAVSETQCQICGELVPGNELQKHIKNVHTDSSVRCKYCEFQTTNRASMTQHMLRHKNATTLHCDFADCKYKTFYEGAMEKHKRRHRDQGVKLQCSQCPFQTMGKYILKYHEEAHATGRKRYSCDQCDYATILPANLVQHRYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_01033959;
- 80% Identity
- -