Isal013378.2
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000145.1:3378130-3386213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.016 1.4 10.2 0.9 3 23 646 667 645 667 0.92 2 23 0.35 30 6.0 0.3 1 22 1045 1066 1045 1066 0.95 3 23 6.9 5.9e+02 1.9 0.3 1 22 1107 1128 1107 1130 0.82 4 23 0.3 26 6.2 0.6 1 14 1139 1152 1139 1160 0.84 5 23 2.7 2.3e+02 3.2 0.1 3 23 1169 1190 1167 1190 0.89 6 23 0.015 1.3 10.4 0.1 3 23 1210 1231 1208 1231 0.94 7 23 0.11 9.1 7.6 6.3 1 23 1237 1260 1237 1260 0.95 8 23 0.13 11 7.4 0.0 1 23 1286 1309 1286 1309 0.90 9 23 0.019 1.7 10.0 3.4 1 23 1314 1336 1314 1336 0.97 10 23 0.00081 0.069 14.3 0.1 1 23 1342 1365 1342 1365 0.96 11 23 7.7e-05 0.0066 17.5 1.3 1 23 1377 1399 1377 1399 0.98 12 23 0.0015 0.13 13.5 4.0 1 23 1442 1465 1442 1465 0.96 13 23 0.015 1.3 10.3 3.4 1 23 1515 1538 1515 1538 0.96 14 23 0.0011 0.098 13.8 2.1 2 23 1563 1585 1562 1585 0.95 15 23 0.09 7.7 7.9 0.1 2 23 1591 1613 1590 1613 0.93 16 23 0.01 0.88 10.9 0.2 1 21 1657 1677 1657 1678 0.95 17 23 0.00047 0.041 15.0 0.6 1 23 1688 1710 1688 1710 0.94 18 23 8.7e-05 0.0075 17.4 0.4 2 23 1800 1822 1799 1822 0.93 19 23 1.8e-07 1.6e-05 25.8 1.1 3 23 1829 1849 1828 1849 0.98 20 23 0.0017 0.14 13.3 2.3 1 23 1866 1888 1866 1889 0.95 21 23 0.19 16 6.9 0.0 1 23 1911 1933 1911 1933 0.97 22 23 0.028 2.4 9.5 0.6 1 23 1939 1962 1939 1962 0.95 23 23 0.00026 0.023 15.9 0.4 1 23 1970 1993 1970 1993 0.96
Sequence Information
- Coding Sequence
- atgaatGTGAATTATGACCGTGTTTGTCGACTGTGCTTGTcatctagatgcgaattattacCGATATTTCCTACCACCAGTTCGGATGATTTGGAACCTCCTGTCCTCGCTTCAAAGATTAATGATTGCGTGTCAGTGCAGATAAGCGAAAATGACGACCTGCCAACCAATGTCTGCAGGAAATGCATTGACAATGTCAATAACTGGCATTTATTCAAGACAGTATGTGAAAGAAcacaaaacaaattacaatcatttttaaataaggaGAGTAACCAACTAGAAGAGgttaaaattaaaaatgaacctTTATCTGATGAAGCTTATGATGAAGGAGTGGTTATTGATGGATCATATCCTGATAGTGAgAATGCCTCGTCAAGTAAAGTTCAGCCAGAGGGTCCACCCATTTTGGCATCGTTGGGGCTCACACCAAGAAGTGATAAGAAATATATAGATCCGAGGATGGATTGGCAACGGGTTCAAGCCATTTTGAATATTGTGCAAGAGGGTGATGTCATAGACTCACTTCAGTCTATGGAAGAATGTGATGTGGTGCATCAATCTGACCATGAATCAGATTCTGAATCAGAATTATGTAATGATTCTGTTAATGATTTCTTAGATAACAAGAATGGATATGTGTGTAGAAATGGAAGAATCCTCTCAAAAACACCTAAAGAAACATCGGCCTgcacaaatattaaaatgaaagaagTTGTTGAGTTGAGGAAACGGAATTTACCTGCACTCACAAATTGCCCTCGACCTAAAAATGCTTGGCAATTGCTCTTTACTGATGACCTATTGGATCTTATTGTTACTTCTACAAATAGAAAGATAGTCACAATAAATAATGGAATGAAAAGCACTAGTGTTAGTGAAATCAGAATAATAATTGGAATTCTATACTATCATGCTATAATGAGACCCACTCACCAGGAGTGCAGCGACCTCTGGCATAATGAATATGGAGCAGTTTGTTTACAAAATGGGATTACATATCagcgttttaaatttttactacaAAATTTAAGTTTTGACAATGAGGATAATGATAGTATTGTACAATATGACATCATGAAGCGTATGAGGGAAGTGTTTGAGATATTTGCTCTAAATTGTCGAAATTCACTAAATATAGGCAATCTAGTTGTTATAGATGAAATCATAGGACCTCTTCAGGGTCCCTGTCCATTTAGATATAGTATAAAGAACAAAAAAGGTCTTAAAATTGTACTTTTGATTGACCCCATTAACTTTTATGTGTCTAGTTTAGATGTTATAACTGATCCTTATTTTGGGAGTGATGATATTGTAGGAAAATTAGTTCAACATATAGCTGGAACTGGTCGCACTGTCATAATGGATAGTTGGTTTACTTCACCtgcattaattaaaaagttaaaaagtgaGTACAATCTGTTTACCATTGGAGCTCTACACcacaaaaatgaaattataccaccattttttttatctaactaCAGAAAAGATATTCCGTTTATCAGTGGATTTCTAGACTTAGATATGACTCTTAATTCTTATGTAAATCATTCGAAAGTTATTAACGTGATCACTAATGATCCCAAATATTATAAGCGAAGTAATACCAGTCAGGGTTCAGTGGCCGCTGTTTACAAGAAACATCAACCATCAGTGGAGGTGTTAGATGTTTTGATGCATTATTATACTACGATGCAGCATACAAATGACTGGACgttatcattatttttcatGCTTCTTAATATAGCATCGATTAATGCTCAAggGTTGGATAGTGAAAAAGACGAGGACTATGAAGACGAGGAAGAAATGGAACAGCAACAATTCTCCAATGTTCCAAGTATGCCAGAAGTTTCAATAACGGTCATGAGACCTAGTGGTGAAACTCTTCACGCTCGTCAAGGCATTCAAGAAATTGCTTCCAAGGATTGTCTTGTATGTGGTCGATCCTATAGATATTCCCATAATGCCCGAAGACATGAACTTAACGCTCACAGTTTCGACAGGTATACCAATAAAATAACCAATAAAAAATCTCAGTCACACATGCAGCCAAAATTCAGACCAAACCCATTTAACCCTAAAGCTCGTTTAATGCCAAATCCGATTAGCCATAAAATgcaatttaattcaaaatcgATGCCGGGGAGAATTATGAAACAGAGAATTGTTGCACCACCTAAGCCAATTCCGATCAAGACGTCCAAAGCTTCGCAAAATAACTTGCCATACCCACTTCGTATAAAAGCCTTAAAAGacttacaaataaagaaaaaagaacctcaaattttaaaaacattgctgACATCTAAACCCGAAGTTTTGGTATCTGAGcctgaaataattaattctgGTCCAGAAAGTCCAGAAACATTAATTTCCGAACCGGAAATAGCATCATTCCAAGTTGAGACAATTCTATCAGAGCCTGACGGGTTTGCTAATCAACAACAAGATGATGAGGAGATGGACAATGATAACCAAGAGCAACAATATGATACTGTCGATATGGACTCTGATAACGAAATAGAAATTGCTCGACAGAACGAAAACGAAAATGATGTAGATATTGATGAAAATCCTTTGATTGAGAATGAGGATAACCAACAGGACGAGGAAAATAATGTGGAGGAAGCTCAAGATGAAAATGACGGAGATGATAATGAGGATAACGATGACAGACAGGATGATTTAGTTAACAACGTAGACGGGGAAGGTGATGATAATGCCAAAGAAAGTCAAGATGATGACGCCGAGAAagaaaattaccaaaatataaagaatGAGGATAATGAAGAGGATGAAGAAATGCCAGCGTTAAATATAGCGCCAGTTGTTGAGATAAATGAAGACATGCAAACGAACTCGTATAACAGTGATGCAAATGAGGAAGAAGAAGCAGATGAAACTGTTGATCCCAACGACACTGTCGATGGTGATGAAGCAGAAAAAGACTTGGACCCAGATAAAGTGTACATCACTAAAACACAAAgagattttattttgaaataccgTGATATTATTCAACAAATTAATACCAAACGGTGCCTTTGCTGTAATAAAGAACATCCACGAAGAAAAGCAGTTATACAACATTTACAGAAAAACGGACACAAGGTCCCAAAACATACTTGCTATAATTGTGTTGTGACTTTCGGACACATCGGTGCCTTGTTGAGCCACATGAGATCTAATACCTGCACGGATCTTTGGAAGATCATTTATAACGAAAATGGCATAACTGATGATATTGTTTTGGAAGATAAACCTGACAACAAAATTCCGTATAAAGATGTCGTCAATGCCAGGTCATACGCCTGTAAATTGTGTCCAGCTAAATTTCaacttaaacaatttataatgaaGCATGTCTTAGATGTCCATGAAGATGGTCAGTCACGCGTTCCATTTTCTTGCGTTCATTGTGGGATGAgatttaaagacaaaaatattggtaaaagaCACATTCGCAATGGAGATTGCACTGTATATATCGCTTGTGAATTATGTTCTGAGAAGTTTATGAACATGCAAGATTTCAATGATCATGCCGTTTCTGTACATGCCGGCAATTTGGATCCGGAAAATCAGACTAAATGCGTCGATGGTCGACCAACCGATTGTCCAATTTGCGGCAAGAAGAACAGTAGCTATCCAAATttagtaaaacatttaaaagctgTACACAATGAAGAAAAACCTCATCATTGCCAACATTGCGACTCTAAATTCGAACAAACTACTGATCTTAACAAGCACATCTATATGGAACATTCCGATAGAAGCTTGGGTATGCAATCTATTGAGCCTGACATGTCAATTGTTAAAGAAGAGGCTGAAGAATACCACTACTCTTGTACAGAATGCAATGCTATCTTTGAAACTGTAGATGCATGGACAGATCACCAAGTAGCTGAACATAATCAGGTTGCTCATCACTGCGATCAATGTGAAAAGAAATTTTTACGTCCATCGGAACTTGCAGAACATAAGAATACTCACCTAAGAGTCAAATTTTATCCTTGTGGCGTTTGTCCCAACTCTTACAGCACTCCCCAAAAGCTAACAGAACATATGCAACAAATGCATCCCGGGGCCACCACACGGGGGGGTGATAGTGATTTCTATTGCGATATATGTGTCAGATCATTTAAAAGTCGCCAAGCATACTCGAACCATATGCGTATTCACTCTAGGGTGCCCACTACGAACAGGAAACCAGGAGAATCTAAAGGATTTGCACCTCAAATAGTCGGTAAAcccataaaacaattttccatGCAACCTGGATTTAGCCCATTTGTACCAAATGCACCTTATTGTTGTGATATTTGCGGTAAAGGTTTCATGCATAAGAAAAACATATGGAAGCATAAGAAAGTACTCCATGCTGATCTTCTCAATGATAGGAATGACAGCGAGGAAAACACTATGCATGCCTCTACTGAAGAAGATGAATATAATGTTGACGAAAATGGTGCAATCCTGTCAACCCCACAATTTAATAGTTTCAATTTTACTAATGATGCTTTACCATATTCTTGTGAAATATGCTATAAACGATTTCCTCTCAGGACATGTTTGTGGAAACACAAACGTGCTAAGCACGGTATTACCAATCCTAACGCTGGTAGTTCTTCGGAAACTCAAACTCAACCGTCATCGGCGGAGGGAAGATCGAGTTGTACCAtatgtaaaatcactttttctGATAAAAAGTCATATTATCGTCATCGAAAAAATGTACACAAGTCGGTTGTACAGATGTGCAAAATATGTGGAAAACCCTTAAATTCTACTTTAGAACTATATGAGCATCTCAAAGCTGCACATGCACGTGAATTGCTTGGTTACAATGCCAATCAAGGCCCTGGCAAGTCTCAGGATTCTGGACAAGATATGGACGTGGAATATGACGAAGACCAAGACTCAGTTGATCCAAGTGTCGATTACCAAGCTCGATACCCCTGCGACACATGTGGCAAGCAGTTTGTTGGGCTATTAGCCTTGCAAAACCATCAGTGTATAAATCAGATTCAGTCACAGCCACAGACATTTGAATGTGAAATATGTCACAAGAGTTACACGTCAATTGCGGCTCTGAAGAGCCACCGTGGATGGCATTTGCGTTCTCCTGACGGTAAAGCTGCCGCAAACAATACAGGACTTTGGATGCCACAGAACAAAGTAACGACCAAAGTAAGCAAACATGAAGTTGTTGATCCAGTTCAGCTCGCACGTGTGCAACATACAACGCCGGCCAGTATTGCTAAAAGAAGGTTACCACCGGAAGTTGAAATAACTGTCGTTAATCCTAATAAGAAATTGCGGTCAGATGATTCCATCGAATTAGATCATCAGAACAACTCCTCCGGTGGACCTGaagataaatattgtaacatttgCGATAAAGAATTCACAAAACGAGCGGCTTATCAACGCCACATGGACGAAGTTCATCAACCCAACTCTGTCTTTTGTCCCGTCTGTGATAAGAGTTTTACAAGAAAGTCTACATTAATTGTTCACATGAAGAAGCATTACGAAAGCGGCGAAGGAACTTCGGGCTCTCAAATAGATGAGGATTCGCACACTTGCGATGTTTGCGGTAGCGTCTTCGATAGCGCAAAATCTTTAATGTCTCATAAAAACATGCATCACGGGGAAGAAGAATCTGATCAGTCCGAAGACGATGGTGGTGCAACTATCTTGCCGCCTGGAGAATTCACCTGCGCTCAATGCGGTGATGGCGTGGCCACCCCACGAGATTTGATAGCCCACCGCACAATGCACGCCACTCCCACTAAGTTTTTCTGTAACATTTGTAAAGTTTACTTCGCTAGAGCGCTAGACCTGTCCTCTCACACGCGAGCTAGACACTCAGACAACGATAAAGTGTTCTTCCCATGTGCGATGTGTGACCGCTTTTATATGAATAAGAAGAGTTTGCAACGTCACATCGAAATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDDLEPPVLASKINDCVSVQISENDDLPTNVCRKCIDNVNNWHLFKTVCERTQNKLQSFLNKESNQLEEVKIKNEPLSDEAYDEGVVIDGSYPDSENASSSKVQPEGPPILASLGLTPRSDKKYIDPRMDWQRVQAILNIVQEGDVIDSLQSMEECDVVHQSDHESDSESELCNDSVNDFLDNKNGYVCRNGRILSKTPKETSACTNIKMKEVVELRKRNLPALTNCPRPKNAWQLLFTDDLLDLIVTSTNRKIVTINNGMKSTSVSEIRIIIGILYYHAIMRPTHQECSDLWHNEYGAVCLQNGITYQRFKFLLQNLSFDNEDNDSIVQYDIMKRMREVFEIFALNCRNSLNIGNLVVIDEIIGPLQGPCPFRYSIKNKKGLKIVLLIDPINFYVSSLDVITDPYFGSDDIVGKLVQHIAGTGRTVIMDSWFTSPALIKKLKSEYNLFTIGALHHKNEIIPPFFLSNYRKDIPFISGFLDLDMTLNSYVNHSKVINVITNDPKYYKRSNTSQGSVAAVYKKHQPSVEVLDVLMHYYTTMQHTNDWTLSLFFMLLNIASINAQGLDSEKDEDYEDEEEMEQQQFSNVPSMPEVSITVMRPSGETLHARQGIQEIASKDCLVCGRSYRYSHNARRHELNAHSFDRYTNKITNKKSQSHMQPKFRPNPFNPKARLMPNPISHKMQFNSKSMPGRIMKQRIVAPPKPIPIKTSKASQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFANQQQDDEEMDNDNQEQQYDTVDMDSDNEIEIARQNENENDVDIDENPLIENEDNQQDEENNVEEAQDENDGDDNEDNDDRQDDLVNNVDGEGDDNAKESQDDDAEKENYQNIKNEDNEEDEEMPALNIAPVVEINEDMQTNSYNSDANEEEEADETVDPNDTVDGDEAEKDLDPDKVYITKTQRDFILKYRDIIQQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEDKPDNKIPYKDVVNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPFSCVHCGMRFKDKNIGKRHIRNGDCTVYIACELCSEKFMNMQDFNDHAVSVHAGNLDPENQTKCVDGRPTDCPICGKKNSSYPNLVKHLKAVHNEEKPHHCQHCDSKFEQTTDLNKHIYMEHSDRSLGMQSIEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCGVCPNSYSTPQKLTEHMQQMHPGATTRGGDSDFYCDICVRSFKSRQAYSNHMRIHSRVPTTNRKPGESKGFAPQIVGKPIKQFSMQPGFSPFVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMHASTEEDEYNVDENGAILSTPQFNSFNFTNDALPYSCEICYKRFPLRTCLWKHKRAKHGITNPNAGSSSETQTQPSSAEGRSSCTICKITFSDKKSYYRHRKNVHKSVVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGPGKSQDSGQDMDVEYDEDQDSVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFECEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTTKVSKHEVVDPVQLARVQHTTPASIAKRRLPPEVEITVVNPNKKLRSDDSIELDHQNNSSGGPEDKYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYESGEGTSGSQIDEDSHTCDVCGSVFDSAKSLMSHKNMHHGEEESDQSEDDGGATILPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -