Ipal009353.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001185.1:9062-15047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.23 9.9 6.5 0.1 3 23 318 339 316 339 0.89 2 15 0.34 15 6.0 0.1 1 22 406 428 406 430 0.70 3 15 0.29 13 6.2 0.1 2 20 437 455 436 457 0.92 4 15 0.38 17 5.8 0.2 1 23 468 490 468 490 0.96 5 15 0.00064 0.028 14.6 4.6 1 23 558 581 558 581 0.96 6 15 0.029 1.3 9.3 2.5 2 23 588 610 587 610 0.95 7 15 0.0034 0.15 12.3 5.8 1 21 711 731 711 732 0.96 8 15 0.0051 0.22 11.7 2.0 2 23 744 766 743 766 0.94 9 15 0.13 5.4 7.3 1.4 1 23 769 792 769 792 0.96 10 15 0.18 7.6 6.9 0.5 2 23 798 819 797 819 0.94 11 15 0.16 7 7.0 1.1 1 23 823 846 823 846 0.97 12 15 0.077 3.3 8.0 0.2 2 23 853 875 852 875 0.94 13 15 0.036 1.5 9.1 0.5 2 23 884 906 883 906 0.95 14 15 0.73 32 4.9 0.5 2 23 1036 1058 1035 1058 0.93 15 15 0.25 11 6.4 0.9 1 23 1071 1093 1071 1093 0.96
Sequence Information
- Coding Sequence
- ATGGAAACGAAATTGTGCCGGATTTGTGGTAAATTAGgccaaaattatataaatattttcaaaacgGAGGGTTTAAAGAATAAGATCGAGACATGTCTCCCAATTATTatatCACCGTATTGTTTATTACCAGACACGATATGTGGTGAATGTTTAGAAAATGTGGATAATTTCTATAgttttataaagaattgtttacaaaatataataatattagaagCACAATATGATATAAATGAGAGTTGTTTGAAAACGAAACGTAAATATGAGAAAAGTACAACAACTGATTGtttaatacagaaatttgataaacaatGCCAAACTGATAATCTATTAGATGTATATTTAAGGAATTTCGATGAATTTAAAACACcgaatttcaagaaaaatagttatttacGTTTAGTTGATTATGATATTGAATCAGATACACAATCTGAAGAATATGATGAACATAAtcgaacaacaataaaaaatgaaataattgataattatttagtgcaaaaaaacaatcatttattaacaataaatcgacGATATTTCGATGATGACGAGAATAATATTATCGATGAGATTACACAAAGAAAAACGAATAGGAAACGGAGAATCGATGGAATTATCGAACATCGACAACCGAAAattttccgAATGGATCAAACAAATCGACGAAAAAATCGCCAAccgaaaaaaatggaattacctcaattacaacaacaaccacaacaacatgaacaaatcaataatgatagtgagacttttaatgatttccaacaacaaccaccaccacaacaacaacaacaacaaaatcatgtAGACTTTGATTTAGattatttagagaaaatttatgatattaATGATATGTCGCCGGttataattaaacaagaacCTGTAACAGACTTAGCACTACCAACATCACcacctcaacaacaacaacaattactacctcaaatttgtttattatgtgAAGAACAATTTTCTGGTCCATCAACATTAGCTAGTCATGTATTTGAAACGCATGGTATTGATATGGCACAAATTCTACAACAAactaatgattattattatttatataataataatgagaaaaagaagaaattaccAAATCTAGTTAAAATATCCGACTTAAAACAACAACGTAATGATTCaatagaTAATACAAATCAAGAAACCACCTTATCAGATGATACAAATCTACCACCAACATTAACACCAAATTATGTATGTCCAATATGTCCGGCAATATTTACCGAAAATCGTcaagaattatttaatcatttagaaaatgaacATATTGaacaatcatcattaatatGTGGTATATGTTTATATCAATCAAATACACAACaaaatctacaacaacatATAATACAATGTAAAGAACAAAATCAAATCGTAACAagatattattgtaatatatgtTTATATGGTGATGATAGTTCACgacaattagaaaaacatatattaatacataattttttattagataattgtCGTAAACAAACGAAAATGTTTGATccaattgattatattgaattgaatcaaaattatcaaaatataaatgatggtAATCGATCAccaaatacaaaacaattacaatgtAATGAATGTGGTTTAGATGATTTTTTATCATATAAAGATTATAGTAATCATCGACGTAATCAacattcaatatttcattgtgatttatgtaataaattctatGGACGTAATTCACATTTATGGAAACATGTTAATCGTTTACATAAAGGCCATCCAAGTATTACATGTCAATTGTGTTATAAAACTAGTGCATCAAAATATCATCTAttacaacatttcaataaaatccacAATAATTCAAAACCATCCAAACAGCAACAAAAGGATGATTTTATGACCCAGAAGTTCCAAGGGTTTGATTTCCAATCGGTGAAACAGAGTTTTATGCGTCAAGAATTGTTATTGGAAGAGGAACAGGAAactaaaaaacaacaccaaatgGATGATGAAATTGGATTAGAtcatgatttaattgatgatgatgatgatgataatagtgcACCACCACCGAAAGAGATTGATTCAAGTAGTGAtctatatacaaatataataacaaattatacaCCACCACCCCAACAAATTGATGGTGAATATAAATGTCAGAAATGTACGAAAAGTTTCCATAAACGTacattattaaagaaacatcGTAAAAATTGTCGTCCACGTTTACAAAAAGATCTATTAACACGTTGTAAATCGTGTTCACGTATATTTAAAGATCGTCAAAGTCTatcaaaacatttaattaattatcattcaGAATATTCATGTGAAATATGTAAAGAAACCGTACAAAGTAAATGTGAAATTATATCACATATACGTTTCCAACATCCTGGATGTAAtttaatatgtaaattatgtaaaaatatccTACGTAATCAATACGAATTGAAATTACACGAATTAAATCACATGAATTCATATGTCTGCCAATTTTGTGGTGATTGTTTGGATagcaaaatcaaattaaaaatgcaTATATTGAGCCTACATCGCAAGATTTTGAGTTTAAGTTGTggtatttgtttgaaattgtttgaaaatcaaattaaattacgtGATCATGTTAAATTAGttcatttgaaacaattacaaccaTTAACAACATGTCCtgtttgtggtaaaaattACGGTTCGAAATGGAAAACGTATgatcatttgaataaatcacATGGACGTATTTTTAAAGCTTGTAAAATGTGCTTGGAAGtttttgataatgattatgaATGGCAATTACATTGTAATCAAATCCATCCAAATGGTAATaatgtaacaacaatacaaaaacaacaatcacaacaacaacaacaacaacatgttaGTGAGACTGATAATGAGGAACCAAGTGATATTGAggaagaaattaaaacaacaacaaccaaacaacaagataatagtaataagaGAACAACAAATCCACAACAAAATAGTTCAAAACGTACGGTATATGTGAATAGTAATGATCCTAGTTTTTGTgagatttgtttaaaaacatgGCCAGCAAAGAAACATTTGTGGCAACATTATATCCGTTGTCATAAACAAGTAGCTGCAACAGTTTGtggtatttgtttaaaaacgaataataattatattgatttacaaaaacatttaaaacaacaacatccaaCATTATTACATGGTCAGGGTTTCGGTTCGAATTTTATCTGTCGTATTTGTGGTCGGTATCATAATGCCagttcaaaattgaaattacataTGGCAATACATGAGAATTTCGATTGGAGTCTATTAGATGAtactaatgatgatgataatgatcatgataatgatgatcaagatgatgatgatgataaaacaaCGAATGGttatagtaacaataatagtaatgataataatgatattaattatGAGAGTTTGATTGAACAAGTTGAATGTTCATCAGCTGgtagtgatagtgatgatCACGAAAAAACTGATAGTGATACGGATAGTGATAGTGATCAAGATGATGATTCTAGTTCAGATGAATCGTCAAGTAATGAATCTCTAGTCTCTGAAAATAATTCgttagaacaacaacaacaatcacaacaacaagagaataGTAGTGATCAAACGAGTTATTGCGATAAAAGTGATAATGATCTCGATATTAATGATCGTGATATATTCCATACAAAGACTGAAGAATTAAATTCTGCAATACAATCAATTGAAGaagaatttgataataatatgagtaaaattgatgatattgatattgatattgatgataatgatgatgatgttgataatgatgataatgatgatgatggtattgaAATTGAGGAATATTGTGATTTACAACAACAGccattaaatgataatgaaatcGAATCAGCTGTTGGTAGTatactttaa
- Protein Sequence
- METKLCRICGKLGQNYINIFKTEGLKNKIETCLPIIISPYCLLPDTICGECLENVDNFYSFIKNCLQNIIILEAQYDINESCLKTKRKYEKSTTTDCLIQKFDKQCQTDNLLDVYLRNFDEFKTPNFKKNSYLRLVDYDIESDTQSEEYDEHNRTTIKNEIIDNYLVQKNNHLLTINRRYFDDDENNIIDEITQRKTNRKRRIDGIIEHRQPKIFRMDQTNRRKNRQPKKMELPQLQQQPQQHEQINNDSETFNDFQQQPPPQQQQQQNHVDFDLDYLEKIYDINDMSPVIIKQEPVTDLALPTSPPQQQQQLLPQICLLCEEQFSGPSTLASHVFETHGIDMAQILQQTNDYYYLYNNNEKKKKLPNLVKISDLKQQRNDSIDNTNQETTLSDDTNLPPTLTPNYVCPICPAIFTENRQELFNHLENEHIEQSSLICGICLYQSNTQQNLQQHIIQCKEQNQIVTRYYCNICLYGDDSSRQLEKHILIHNFLLDNCRKQTKMFDPIDYIELNQNYQNINDGNRSPNTKQLQCNECGLDDFLSYKDYSNHRRNQHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQLCYKTSASKYHLLQHFNKIHNNSKPSKQQQKDDFMTQKFQGFDFQSVKQSFMRQELLLEEEQETKKQHQMDDEIGLDHDLIDDDDDDNSAPPPKEIDSSSDLYTNIITNYTPPPQQIDGEYKCQKCTKSFHKRTLLKKHRKNCRPRLQKDLLTRCKSCSRIFKDRQSLSKHLINYHSEYSCEICKETVQSKCEIISHIRFQHPGCNLICKLCKNILRNQYELKLHELNHMNSYVCQFCGDCLDSKIKLKMHILSLHRKILSLSCGICLKLFENQIKLRDHVKLVHLKQLQPLTTCPVCGKNYGSKWKTYDHLNKSHGRIFKACKMCLEVFDNDYEWQLHCNQIHPNGNNVTTIQKQQSQQQQQQHVSETDNEEPSDIEEEIKTTTTKQQDNSNKRTTNPQQNSSKRTVYVNSNDPSFCEICLKTWPAKKHLWQHYIRCHKQVAATVCGICLKTNNNYIDLQKHLKQQHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWSLLDDTNDDDNDHDNDDQDDDDDKTTNGYSNNNSNDNNDINYESLIEQVECSSAGSDSDDHEKTDSDTDSDSDQDDDSSSDESSSNESLVSENNSLEQQQQSQQQENSSDQTSYCDKSDNDLDINDRDIFHTKTEELNSAIQSIEEEFDNNMSKIDDIDIDIDDNDDDVDNDDNDDDGIEIEEYCDLQQQPLNDNEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -