Ipal010370.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001534.1:984-2630[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.56 10.5 0.5 2 20 135 153 134 155 0.93 2 12 0.002 0.087 13.0 2.1 1 23 167 189 167 189 0.98 3 12 0.0044 0.19 11.9 2.9 2 19 221 238 220 241 0.93 4 12 1.6 69 3.9 0.4 2 23 244 264 243 264 0.93 5 12 0.019 0.82 9.9 2.5 2 19 309 326 308 329 0.93 6 12 1.7 75 3.8 0.2 2 23 332 352 332 352 0.89 7 12 0.067 2.9 8.2 0.5 3 23 359 380 357 380 0.95 8 12 0.11 4.9 7.5 8.5 1 23 385 407 385 407 0.95 9 12 0.00021 0.0089 16.1 0.6 1 23 413 436 413 436 0.96 10 12 3.8e-06 0.00016 21.6 1.2 1 23 442 464 442 464 0.98 11 12 5.3e-06 0.00023 21.1 0.7 1 23 470 493 470 493 0.98 12 12 9.9e-05 0.0043 17.1 2.3 2 23 502 523 501 523 0.96
Sequence Information
- Coding Sequence
- ATGGACAGAGAAATTTGTAGGTTATGTTCTGTTACTGTCCcagtttatttttcattaataaatcctGATCTTTCAAAAATGTTAGAATCTTTAACATCAATcaagGTAACAGACAATGATGGCTTATCTACAGTAAGTTGTatgaaatgtttattaaatttgaaattagcGTTCAATATACAACATAAAATGCTAAAAGTTGATGAAAAGTTACGTAATAACTATTTAAACTACACACCAATAAAAGAGGAGATCTCGGAAATGGTTGTTGAAGAAGAAAGTCGCCTGATTAAACCAACAATAGAATCACTGAAcatttgtgataatttatgtaaaatttgtggccttttgattaaagaaaatatgttGCAACATGTACAAGaacattttcaatcaatacaaGAATGTCAAGTTTGtgaaaagaattttaaaaatattcaagagtatcataaacatttaatagaatgtcaacaacaagaagacaAAAAAGTTGATTCTTATGTATGTGAAAAGTGTAGTAGTACGTTCCGTTATGAATCACTATATAATTTACATACTAAAAGTCATTTAAAtagtgataaaaatgatactGATAACGtgaatgaaaatagaaaatatgatTCTGATATTTGTCGTACAGTAAATGATATGTCGGTTCTACGTTGTGatatttgttcaaaaacatttcaaacaCTCAAACAATTCCGTAAGCATTCACATAAACGTAAAGAATGTCCAATATGTAAAGCAAAAATAACAGCCAATTATTTTTCCAAACATGTTAAAAACCATTCATGCAATGAACGAAATATATCTAGttcacataaaaaaaatcatctaaatagtgataataatgataacgtGAATGGAAATAGAGAATATGTTTCTGATAATTGTCGTACAGTAAATGATGAAACAAACCTACGTTgtgatatttgtttaaaaacatttcaaacaCTTAAACAATTCCGTAAACATTCACATAAACAGAGAGAATGTCCAATATGTAAAGCAAAAATATCAGTAAATAGTTTCTCAAATCATATGAGAGATCATACACATGGAAAACAAATATGTGAACTATGCGGAGTAGAATCAAAAAGCATTGCATGTTTAAAAGTTCATTTACGGCAAACACATAGTACGAAAAGATATAAATGTGATGAATgcaatttaacatttaaacatTATCAAACTTATACAACACATTGTAAATCACATACTGGAGAGAAAGATCATATTTGTGACCAATGTGGTAAacgttttgtaataaaacctTATTTAGATAAACACGTACGAATGATACATTTAAAACTGCGTCCATATGTttgtgaattttgtaaaaaggCATTCACTACTGCGAATGCATTAAGAACACACCGACGACAACATACCAATGAAACACCATATCGTTGTGAAGTGTGTGGTGAAGGATTTCGACAGAATGTTTCATTACGTTTACATCGGAAATCAAaacataatattattgaaccGATCACGTGTGCATGTGAAATTTGTGGCAAAGAATTCAGTAGTCGACAAGCTATTCATAGTCATATGAGATTGcattga
- Protein Sequence
- MDREICRLCSVTVPVYFSLINPDLSKMLESLTSIKVTDNDGLSTVSCMKCLLNLKLAFNIQHKMLKVDEKLRNNYLNYTPIKEEISEMVVEEESRLIKPTIESLNICDNLCKICGLLIKENMLQHVQEHFQSIQECQVCEKNFKNIQEYHKHLIECQQQEDKKVDSYVCEKCSSTFRYESLYNLHTKSHLNSDKNDTDNVNENRKYDSDICRTVNDMSVLRCDICSKTFQTLKQFRKHSHKRKECPICKAKITANYFSKHVKNHSCNERNISSSHKKNHLNSDNNDNVNGNREYVSDNCRTVNDETNLRCDICLKTFQTLKQFRKHSHKQRECPICKAKISVNSFSNHMRDHTHGKQICELCGVESKSIACLKVHLRQTHSTKRYKCDECNLTFKHYQTYTTHCKSHTGEKDHICDQCGKRFVIKPYLDKHVRMIHLKLRPYVCEFCKKAFTTANALRTHRRQHTNETPYRCEVCGEGFRQNVSLRLHRKSKHNIIEPITCACEICGKEFSSRQAIHSHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -