Ipal010371.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001534.1:3265-4902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 0.93 9.8 3.3 2 19 89 106 88 108 0.95 2 11 0.0048 0.21 11.8 1.7 2 19 139 156 138 158 0.95 3 11 0.35 15 5.9 0.3 2 23 162 182 161 182 0.94 4 11 0.00036 0.016 15.4 1.9 2 19 197 214 196 216 0.95 5 11 2.4 1e+02 3.3 0.1 2 23 220 240 219 240 0.88 6 11 0.13 5.7 7.3 0.0 3 23 247 268 245 268 0.96 7 11 0.046 2 8.7 8.8 1 23 273 295 273 295 0.95 8 11 9.9e-07 4.3e-05 23.4 1.4 1 23 301 324 301 324 0.96 9 11 0.00047 0.02 15.0 2.2 5 23 334 352 333 352 0.95 10 11 0.00011 0.0048 17.0 1.0 1 23 358 381 358 381 0.98 11 11 3.7e-05 0.0016 18.5 3.8 2 23 390 411 389 411 0.96
Sequence Information
- Coding Sequence
- atgataaaagttgatgaaaaattacgtaataattatttagattatATACAAGTGAAAGAGGAAGTCTCAGAAATGGTTGTTGAAGAGGAAAATCAGTTGGTTAAACCAACAATAGAATCATTagaaatttgtgataatataTGTAACATTTGTGGCCTTttgattaaagaaaatatgttGAAACATGTACAAGAACATTTTCAATCGATACAagaattGTATGATTCTGATTTTGATCATATAGTAAATGATATGCCGGATCTACGTTgtgatatttgtttaaaaacctTTGAAACACACAAGCAATTTAAACAACATTCACATGAACGTAAAGAATGTCCAATATGTAAAGCACAAATAACAGCAAagTATGATTCTGATATTGATCATATAGTAAAGGGTGTGCCGGATCTACGTTGtggtatttgtttaaaaacctTTGAAACACAAAAGCAGTTTAAACAACATTCACATGAACGTAAAGAATGTCCAATATGTAAAGCAAAATTATCAGTAAATAGTCTTGCCAAACATGTGAAGAAACATTCATgcaatgaaaatgaaaatagaaaatctaaaaCAAATCTACGTTGTGatatttgttcaaaaacatttaaaacacGTGGACTATTCAATAAACATTCACATGAACGTAAAGAATGTCCAATATGTAAAGCAAAATTATCAGCAAATACTATCGTTAACCATATAAGAGATCATACATTTGGCAAGCAAATATGTGAATTATGTGGAGCAGAATTAAAAAGTATCGCATATTTAGGTGTTCATTTACGGAAAACACATGGTACGCCAGGATATAAATGTGACGAATgcaatttaacatttaaacatTATAAAAGTTATACAACACATTGTAAATCACATACTGGTGAGAAAGATCATATTTGTGAGAAATGTGGTAAACGTTTTGTAACAAAACCTTATTTAGATAAACACATTAGAAcaatacatttaaatttacGTCCAcatgtttttgaattttgtaaaaaagcATTTTCAAGTCCATTTCATCTAAGACAACATCGACGACAACATACCAATGAAACACCATATCGTTGTGAAGTGTGTGGTGATGGTTTTCGACAACGTGTTTCATTACGTTCACATCGGAAATCAAaacataatattgttgaacCAATAACGTGTGCATGCAAAATTTGCGGTAAAGAATTCAGTAGTCGACAAGCTGTTCACAGTCATATGAGACgacattttcttgtttaa
- Protein Sequence
- MIKVDEKLRNNYLDYIQVKEEVSEMVVEEENQLVKPTIESLEICDNICNICGLLIKENMLKHVQEHFQSIQELYDSDFDHIVNDMPDLRCDICLKTFETHKQFKQHSHERKECPICKAQITAKYDSDIDHIVKGVPDLRCGICLKTFETQKQFKQHSHERKECPICKAKLSVNSLAKHVKKHSCNENENRKSKTNLRCDICSKTFKTRGLFNKHSHERKECPICKAKLSANTIVNHIRDHTFGKQICELCGAELKSIAYLGVHLRKTHGTPGYKCDECNLTFKHYKSYTTHCKSHTGEKDHICEKCGKRFVTKPYLDKHIRTIHLNLRPHVFEFCKKAFSSPFHLRQHRRQHTNETPYRCEVCGDGFRQRVSLRSHRKSKHNIVEPITCACKICGKEFSSRQAVHSHMRRHFLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -