Ipal004168.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010000292.1:83528-85382[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 46 4.4 1.2 1 23 135 158 135 158 0.92 2 10 0.0021 0.09 12.9 1.8 2 23 170 192 169 192 0.94 3 10 0.0084 0.36 11.0 0.3 1 20 231 250 231 254 0.92 4 10 1 45 4.5 0.2 1 17 261 277 261 284 0.74 5 10 2.5e-06 0.00011 22.2 2.5 1 23 290 312 290 312 0.98 6 10 4e-06 0.00017 21.5 0.6 1 23 321 344 321 344 0.97 7 10 0.00058 0.025 14.7 1.2 1 23 350 372 350 372 0.95 8 10 0.011 0.49 10.6 3.5 1 23 378 400 378 400 0.97 9 10 0.00037 0.016 15.3 4.6 1 23 406 429 406 429 0.98 10 10 0.0039 0.17 12.1 0.8 1 23 438 461 438 461 0.97
Sequence Information
- Coding Sequence
- atgaaaacTGCACCAATACCATCTGGAGATGTTATCTGGTCATCTAATGATGATCTTTTAACAGGCGAAGCTTGCCTTCCAGTTATTGGTAGTTGTCAAGTATCGTCAATTCTATCAACATTAGATAGTTCGAATGAGCATATTGAAGGAGAGCCTGCAGCCCCACTGCCATCTGCCCCACAGCCGACACTGccacaacatcaacaacaacaacaacaaaatgttgatatggttgtttcaaataatgaatCAACTAAAccacaaaataattatgttgTATTGAAAGATAATggaattagtaataataataataataataataataataataagaaaacaaaaccACAAGACAAGTGCAATAATTTGAGAAATGGtgaaaataatttcgaaaatatgCTATATTTTGTGTGTAATTTATGTCCGTTTTTATGTACGAAAAATACAAAGATCACAGAACATTTAGAGAATgcacacaaaaataaaacaataagaaaaataccGCATTTAAAATGTCCAGCATGTCCAAATGTTTTCTCACATAAAATGTCGTTAAGATCACATCTATTACATGATCATGGTGTTGGGAtcaaatttaagaaaatgcACAATTGTTTGCTACCACTGTGTAAAGTACAAATGCAGAccattgataatttaaattatcatatgAATTGTCATAAAGATGATGGTTTTTCATGTCCAACTTGTAATGAAACATTCAATTTATGGAAACCGTTAAGTAGTCATTTATGGCGATTACATAAAATCGATATGGAATTATATTCATGTGATCAATGTGATTATAAATCAGTTAGTTTagcaaaattgaataatatccATAAATTAATACATAGTGATATAAAAGCGTATATATGTACAATATGTAAAAAGGCATTCAAAAatagtaaacaattaaataatcataaaacaaCACATAAAACACAATCAAATAAACCGAAATTTTCATGTGAGATATGTTTGAAGATATTCACGGATAGAagacaattaaaattacatatgAATATGGTACATGAGAAAATCAAACCGTTCTTGTGTAATTTCTGTCCGTATAAAGGATCATCAAGGAGTTCATTAAAAATGCATATACGACAACATACagGGGAAAAACCGTTTGCTTGTGATTCGTGTTCGTACACAACATCCGATCATAATTCATTGAGACGTCACAAATTACGTCATACAGGccaaaaaccatataaatgttCCTATTGTTCATATGCCTGTATACAGAGTAGTACATATAAAGTGCATTTAAAGACAAAACATCCAGGACAAGAGAAAGACTTAATGTTCACATGTACAGAATGTCAATTTCGGTCGGTTAACAAAGAAATGTACACATTACATATGGTAACGGTCCATGACCAGAAACCGCATAATTGA
- Protein Sequence
- MKTAPIPSGDVIWSSNDDLLTGEACLPVIGSCQVSSILSTLDSSNEHIEGEPAAPLPSAPQPTLPQHQQQQQQNVDMVVSNNESTKPQNNYVVLKDNGISNNNNNNNNNNKKTKPQDKCNNLRNGENNFENMLYFVCNLCPFLCTKNTKITEHLENAHKNKTIRKIPHLKCPACPNVFSHKMSLRSHLLHDHGVGIKFKKMHNCLLPLCKVQMQTIDNLNYHMNCHKDDGFSCPTCNETFNLWKPLSSHLWRLHKIDMELYSCDQCDYKSVSLAKLNNIHKLIHSDIKAYICTICKKAFKNSKQLNNHKTTHKTQSNKPKFSCEICLKIFTDRRQLKLHMNMVHEKIKPFLCNFCPYKGSSRSSLKMHIRQHTGEKPFACDSCSYTTSDHNSLRRHKLRHTGQKPYKCSYCSYACIQSSTYKVHLKTKHPGQEKDLMFTCTECQFRSVNKEMYTLHMVTVHDQKPHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -