Ipal010555.1
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001632.1:11407-12805[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0043 0.18 12.0 0.3 2 21 137 156 136 157 0.93 2 10 0.00075 0.032 14.3 4.3 1 23 167 189 167 189 0.98 3 10 0.00063 0.028 14.6 2.9 2 19 227 244 226 246 0.95 4 10 0.065 2.8 8.2 0.1 2 23 250 270 249 270 0.96 5 10 0.046 2 8.7 0.5 3 23 277 298 275 298 0.93 6 10 1.5e-05 0.00064 19.7 3.2 1 23 303 325 303 325 0.99 7 10 8.7e-06 0.00038 20.4 4.2 1 23 331 354 331 354 0.96 8 10 2.9e-06 0.00013 21.9 0.9 1 23 360 382 360 382 0.98 9 10 2.4e-06 0.00011 22.2 0.9 1 23 388 411 388 411 0.98 10 10 8.9e-05 0.0039 17.3 2.2 2 23 420 441 419 441 0.96
Sequence Information
- Coding Sequence
- AtggatagaaaaaattgtaggttATGTTTGGGTACTCTTCctgttggtttttctttattaaatccCGAAATTTCACAAATGTTGGAATCCTTAACATCAAttaagGTAACTGATAATGACGAATTATCAACAGCTTGTTGTGCAAAATGcctattaaatttaaaactagcgtatattatacaacaaaatatattaaGAGCGGATGAAAAACTTCATAATGACTATCTAAATcatatagaaataaaagagGAAATCtgtgaaattattgttgaagagAAGAATgaacataaaacaacaacagcatcaacagaatcattgaaaatttgtgaCAATTTATGTACAATTTGTGGAATTCcaataacagaaaatatgTTCGAACATATACAAGAACATTTCCAATCAATACAAGaatgtaataattgtgaaaaGAATTTTACAGATGTTCAAGAGTATCgtcaacatttaataaaatgccAGCAACCAAACAAGCAGAAAACACATACATGTGAAACCTGTGGTAgtaaatttcgttataaatcattatataatttacatcTAAAAAGTCATTtatgtaatgataataaagagatggattatgatgatgatgatggtgatgataataaagatgaagattatgataatgatttctgtaatacaacaaatgataaagCAGATCTACGTTGTGATATCTGTTCGAAAACATTTACAACCCGTAAACAATTCAGTAAACATTCACATGATCGTAAAGAATGTCCAATATGTAAAGCTAATGTAACATCAAGTAATTGGGCGAAACATGTCAAGAATCATACATCTGAACCACAAATATGTGAATTATGTGGTGCCACATTAAGAAGTACCGAATGTTTACGAATCCATTTAATACAGACACATAGTAAACGACAATTTAAATGTGAAGAATGTAATATTACATTTAAAGTTCGCTATAATTATATGAAACATCGTAAATCACATGCTGGTGAAAAGGATCATATTTGTGACCAATGTGGTAAAGGTTTTATAACGAAACATTATCTAAATAAACATGTCAGGAAGACACATTTGAAATTGCGTCCGTTTGTTTGTGAATTCTGTGAAAAGGCATTTTCCAGTAAATATGCTCTAATAACACATCGACGACAACATACCAAAGAAACACCGTATCGTTGTGAAGTGTGCGGTGAAGGGTTTCGACAGAATGTCTCATTACGTACACACCGGAAATCAAAGCATAATATCATTGAACCGATAACGTGTGCATGTGAAGTTTGTGGTAAAGAATTCAGTAGTCGACAAGCAGTTCATAGTCATATGAGGCTACATTAG
- Protein Sequence
- MDRKNCRLCLGTLPVGFSLLNPEISQMLESLTSIKVTDNDELSTACCAKCLLNLKLAYIIQQNILRADEKLHNDYLNHIEIKEEICEIIVEEKNEHKTTTASTESLKICDNLCTICGIPITENMFEHIQEHFQSIQECNNCEKNFTDVQEYRQHLIKCQQPNKQKTHTCETCGSKFRYKSLYNLHLKSHLCNDNKEMDYDDDDGDDNKDEDYDNDFCNTTNDKADLRCDICSKTFTTRKQFSKHSHDRKECPICKANVTSSNWAKHVKNHTSEPQICELCGATLRSTECLRIHLIQTHSKRQFKCEECNITFKVRYNYMKHRKSHAGEKDHICDQCGKGFITKHYLNKHVRKTHLKLRPFVCEFCEKAFSSKYALITHRRQHTKETPYRCEVCGEGFRQNVSLRTHRKSKHNIIEPITCACEVCGKEFSSRQAVHSHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -