Basic Information

Insect: Iselma pallidipennis
Gene Symbol: -
Assembly: GCA_037464855.1
Location: JAZBHA010002344.1:4322-7901[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.077 3.3 8.0 0.5 1 23 246 268 246 268 0.96

2 14 5.8 2.5e+02 2.1 0.1 9 23 282 296 280 296 0.90

3 14 0.00068 0.03 14.5 2.6 1 23 399 421 399 421 0.99

4 14 0.00043 0.019 15.1 1.5 1 21 446 466 446 468 0.90

5 14 4.1 1.8e+02 2.6 0.1 8 23 475 490 474 490 0.89

6 14 1.9e-05 0.00082 19.4 8.3 1 23 496 518 496 518 0.99

7 14 0.0012 0.052 13.7 5.2 1 22 524 545 524 548 0.91

8 14 2.5e-05 0.0011 19.0 2.3 1 23 554 576 554 576 0.98

9 14 0.00036 0.015 15.4 7.4 1 23 582 604 582 604 0.98

10 14 8.3 3.6e+02 1.6 4.5 2 23 611 632 610 632 0.94

11 14 1.5e-05 0.00064 19.7 3.9 1 22 641 662 641 665 0.90

12 14 5.3e-06 0.00023 21.1 2.5 1 23 671 693 671 693 0.98

13 14 9.6e-07 4.2e-05 23.4 2.6 1 23 699 721 699 721 0.99

14 14 1.4e-05 0.00061 19.8 1.5 1 23 727 749 727 749 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.077	3.3	8.0	0.5	1	23	246	268	246	268	0.96
2	14	5.8	2.5e+02	2.1	0.1	9	23	282	296	280	296	0.90
3	14	0.00068	0.03	14.5	2.6	1	23	399	421	399	421	0.99
4	14	0.00043	0.019	15.1	1.5	1	21	446	466	446	468	0.90
5	14	4.1	1.8e+02	2.6	0.1	8	23	475	490	474	490	0.89
6	14	1.9e-05	0.00082	19.4	8.3	1	23	496	518	496	518	0.99
7	14	0.0012	0.052	13.7	5.2	1	22	524	545	524	548	0.91
8	14	2.5e-05	0.0011	19.0	2.3	1	23	554	576	554	576	0.98
9	14	0.00036	0.015	15.4	7.4	1	23	582	604	582	604	0.98
10	14	8.3	3.6e+02	1.6	4.5	2	23	611	632	610	632	0.94
11	14	1.5e-05	0.00064	19.7	3.9	1	22	641	662	641	665	0.90
12	14	5.3e-06	0.00023	21.1	2.5	1	23	671	693	671	693	0.98
13	14	9.6e-07	4.2e-05	23.4	2.6	1	23	699	721	699	721	0.99
14	14	1.4e-05	0.00061	19.8	1.5	1	23	727	749	727	749	0.98

Sequence Information

Coding Sequence: atggaattgtgtcgattgtgttatttagaaacatctccagatttatcaaaaaacatatttttaactCAACAGAATGATCTAAATGTTGTGCAAATTATTGAGCAATTATTAGGAATAGaaTTGTCTGAAAACGATccatttccaaaaataatttgcACAAATTGCTACAAAACACTGATCCGTTTTTATACGTTCCGACAGTCAGTTTTAgaagtaaatttgaaatttcatcaaaatttcaataatattgtgaaacaggaaataataattgaagaaaatcctGTAATTTacGACTTTGAAACACCAATAAATGAAGATAATGATTTTACACTGAAGCCAATAAAAGTTGAGCCCTCCTTTACATCAACGGaggaatatgaaaatgataataatgaagaattgtttataaatgaaaGTACAATTGAAGAATCCCataataacaaaactataaatGAAGACAATGATAAGATAGCACTTGTGTGTGGTATTCGCAATAGCAATTATGTACAAAAACCTAGTATAACTAGACATCTACGTGACCACGATTATAgtaaaaaattgcaaaattgcaGTATTGGTCAAGAAAATTCTTCAGAAAGTCAACTATTAAAGATTCATAGTGATAAGAGTAGTGACAATGATAACAGTGTAAGTAACAATCAAGTTGCAAAGAAACctgaaattgataagaatctaATGTTGCAGTACTTACGCACCCATGGTTTTATAATACCGTATAAATGTATTACTTGTCAAGTCAGTTTTGCAGAACGtcaattattaaagattcATTTAAGCAATCATCTTAATAAGAAACCTATTAGGGATAATCGTAGTAAAGTTAGTTTTGCAGGACGtcaattattaaagattcATTTGAACAGTCATCTTGATAAGAAAACTATTagtgataatagtaataatgataatgacagTGGAAGTAGCAGCAAACAAGTTGAAAATAATCCAGAAATTGaaaatattgaaacacaaataatcgaaaatgaaaattttaataatcagactttaattgaaattattgaaaatgtggAGTTTTcccataattataataatgataatgagaaGCATTCTGTTGATGAAAATCGTGTAAGAACGGAGAATGCTCCTGAAACtgatgaaaacgaaaaagaaaaagaaataaatggaGATAATAACAAGTTTCCACAAGAGTCATATAAATGTAGTGAGTGTGAAAAAAGTTTTCTGCATGaagtacaattaaaatatcatctCAAAGTACATAATCGTAGAAAATTACTTgtacttcaaaaaaaattggccaaCCATTCAAAAGTGCATGAAGAAAAACCTCGATTTACTTGTGAACATTGTGATAAAACATTTCCAACtgatcaacaattatttgtacATTCTGTTGAACATACCAGTGAAATTGGTAACACTAGTTACCCATATCGTAATGATTTAAGTGCACATTTGCGTGCACATATTGGTGAAAAACTGTATAAATGCCATCAATGTGATAAACGTTATTCACACAGGAAATATCTAAATAgacatttattaacacatacAGACGAAAACCCATATAAATGTCATCTTTGTCATAAacaattttcagaaaattatcGGTTAAAGAATCATCTATTATCAGTAACACATACGGGTGAACGACGGTTCGAATGTCAGGTTTGTTATAAACGTTTTTCACAAAAGAAAACTCTAAATAGTCATTTAgtaacacatacaggtgaaaaaccacATAAATGTcatttttgtgataaaggtTTTTTCCGCAAGCAATCTCTAACTAGTCATTTATCAACACATACGGGTGAAAAACCGCTCAAATGTCATCTATGTGAAAAAAGTCATTTGAGAAAGAGTCGTCTGAATGATCATCTAGTAACACACACAGCACATACAGGTGAACAACCGTATAAATGTCATCTGTGTAATAAGGGTTTTTCAAGAAAGAATGATTTAAAGAAACACTCATTAACCGTAAAGCATACAGGTGAACGACGGTTCGAATGTCATCTTTGTGATAAACGTTTTTCAGAAAAGGGAACTCTAACTAAGCATTTAgtaacacatacaggtgaaaaacccTATAAATGTCATCTTTGTGATGAAAAATTTACACGTAGGGCCGGTTTACAGTTGCATTTACGAACACATAATGGTAATGGAGCGTATGCTTGTCATtattgtggtaaaaaatttgcaataaaacgCTCCTTAGAAGATCATTTGAATAGTCATACTGGTGAGAAACCATag
Protein Sequence: MELCRLCYLETSPDLSKNIFLTQQNDLNVVQIIEQLLGIELSENDPFPKIICTNCYKTLIRFYTFRQSVLEVNLKFHQNFNNIVKQEIIIEENPVIYDFETPINEDNDFTLKPIKVEPSFTSTEEYENDNNEELFINESTIEESHNNKTINEDNDKIALVCGIRNSNYVQKPSITRHLRDHDYSKKLQNCSIGQENSSESQLLKIHSDKSSDNDNSVSNNQVAKKPEIDKNLMLQYLRTHGFIIPYKCITCQVSFAERQLLKIHLSNHLNKKPIRDNRSKVSFAGRQLLKIHLNSHLDKKTISDNSNNDNDSGSSSKQVENNPEIENIETQIIENENFNNQTLIEIIENVEFSHNYNNDNEKHSVDENRVRTENAPETDENEKEKEINGDNNKFPQESYKCSECEKSFLHEVQLKYHLKVHNRRKLLVLQKKLANHSKVHEEKPRFTCEHCDKTFPTDQQLFVHSVEHTSEIGNTSYPYRNDLSAHLRAHIGEKLYKCHQCDKRYSHRKYLNRHLLTHTDENPYKCHLCHKQFSENYRLKNHLLSVTHTGERRFECQVCYKRFSQKKTLNSHLVTHTGEKPHKCHFCDKGFFRKQSLTSHLSTHTGEKPLKCHLCEKSHLRKSRLNDHLVTHTAHTGEQPYKCHLCNKGFSRKNDLKKHSLTVKHTGERRFECHLCDKRFSEKGTLTKHLVTHTGEKPYKCHLCDEKFTRRAGLQLHLRTHNGNGAYACHYCGKKFAIKRSLEDHLNSHTGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -