Ipal007626.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Iselma pallidipennis
Gene Symbol
wdn
Assembly
GCA_037464855.1
Location
JAZBHA010000799.1:9483-11738[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0097 0.42 10.8 0.2 2 21 217 236 216 237 0.94
2 10 4.5 1.9e+02 2.5 6.6 1 19 245 263 245 267 0.90
3 10 0.00011 0.0047 17.0 0.7 1 23 273 296 273 296 0.93
4 10 6.7e-07 2.9e-05 23.9 0.6 1 23 302 324 302 324 0.99
5 10 0.00014 0.0061 16.6 0.2 1 23 332 354 332 354 0.98
6 10 1e-06 4.5e-05 23.3 1.0 1 23 360 382 360 382 0.97
7 10 1.9e-05 0.00082 19.4 5.0 1 23 388 410 388 410 0.95
8 10 0.00062 0.027 14.6 2.9 1 23 416 438 416 438 0.97
9 10 0.00059 0.025 14.7 2.0 1 23 444 466 444 466 0.98
10 10 2.2e-05 0.00095 19.2 3.5 1 23 472 495 472 495 0.98

Sequence Information

Coding Sequence
atgcgacatttagaaaaaatgaatatcgaaattgaatcaaaagaggaatattttgataatttaattgaaataaaagagGAATTCCCACCGTTAATATTAGATAGTTGCGATATACCCAGTGATAATTATTTAAGTGATGATGGTagtttaatggaaaattcaattaatatagaATTAAATCATTCTAGTGATAGTAAtagtagtgatgatgatgattgtgatactattacaacaacaatcacaacaacaaccacaacaacaacaacatcatcatcatcaaggaATAAAATCCGTAGAAATCGACGTAAATCATTACTACCACAAAAGGCTGTGCAATCcgaatcaaatcaaacaaattcgATTGGAAATACGTCAGAATCATCACAAGATATGAACGAAAAGGGccaaaataatgataacagtataacaacaacaacaacaacaaatatcgaTAGTATTGgcttaaataatttaatcgtAAATACCAACGACAATTCATTAAACCTACCAGATACTGATGATCTATTACGTGATATTAATGAAgatgatatttttaaagatCTACAAGAAGAAGCGGCTGaaGGTGAAAATTTGGATGAAGAAATTTTGGATAATGTTAAAGAAGAATGGCGTGCACATTGGGGTGTTAAATGTAATATGTGTGAACAAGTATTCCCATATAAAACCGAATTTGATAAACACTATCAAGAATCATATGGTTTAGTACCGGTTTATACTTGTACGTTTTGTAATAAGACTGCTgagaaatattcaacatttcgTTCGCATTGTTATCGACACATTACCGAAGGCCGTTATAAgtGTCAAGAGTGTCCAAAAGGATTTAGTCTACAAAGTATGCTCCATATTCATGTATTAGCCAAACACACAAAAGCTAAACCGTTTAAATGCGGTGAATGTGGCAAACGATTCGTTACAAAACCAGGACTAAAAATCCATTTAAAGAAACATAAGACTGAAGTTAAAGAGGATTATCCTTGTGTTGAATGTGGCAAAATATTGCACACTCGAGGTGGTTTAACGTCACATATGAACGTCCATCGACTTGGCCGTCGATTTATGTGTGATGTTTGTGGTAAAACATTCACACAAAAAGTCAATATGCAACAACATGTTAAACAACATACCGGCGATAAGCCCCATCGATGTGATAAATGTGGCAAAAcATTTGCAGAAAAGTCCCATTTGGCTCGCCATTATAGCTTCCATAGTGACCAACGACCGTACAAATGTGAAGTATGCCAAAAAATGTACAAGACTGAACGTTGTTTAAAAGTGCATAGTTTAGTACATGCTGCAGCACGTCCATTTGTTTGTACCTATTGCAACAAAGGGTTTTTAAGTAGCACCAAACTTAAACAACATTATAATATTCATACTGGCGAACGACCATATAAATGTAAGTATTGTGAACGTACCTTTACAAATTATCCCAATTGGTTGAAACATACAAGAAGAAGACATAAAGTTGATCATAAGACTGGTGAAGATTTAGGTTCCAAACTGCCTAAAGAAGAAATCCAACCATCACTACAAcccctacaacaacaacaacctacCATTTTACAACAAGAACCCATGACTCAAGTGGATAATTCAGATCAATTAATTTCCGATATTTCATTAACTAAAActgaagaattattaatacaacagggtttattgaattttccattgaATGATGAGAAATTTTCACTACCACAACAAATCGACTTTTTGGCAGGTACAAGTAACAATACAATGGGTGTAATTGTTCCATATTTCCAAACATCTCTACCATCCCATCAAACATTGgtaacaaatacaaataatacgGTGCCAACTATACAATTCAATGATTTAGTTCattcacaatatttacaacagccacttttgtga
Protein Sequence
MRHLEKMNIEIESKEEYFDNLIEIKEEFPPLILDSCDIPSDNYLSDDGSLMENSINIELNHSSDSNSSDDDDCDTITTTITTTTTTTTTSSSSRNKIRRNRRKSLLPQKAVQSESNQTNSIGNTSESSQDMNEKGQNNDNSITTTTTTNIDSIGLNNLIVNTNDNSLNLPDTDDLLRDINEDDIFKDLQEEAAEGENLDEEILDNVKEEWRAHWGVKCNMCEQVFPYKTEFDKHYQESYGLVPVYTCTFCNKTAEKYSTFRSHCYRHITEGRYKCQECPKGFSLQSMLHIHVLAKHTKAKPFKCGECGKRFVTKPGLKIHLKKHKTEVKEDYPCVECGKILHTRGGLTSHMNVHRLGRRFMCDVCGKTFTQKVNMQQHVKQHTGDKPHRCDKCGKTFAEKSHLARHYSFHSDQRPYKCEVCQKMYKTERCLKVHSLVHAAARPFVCTYCNKGFLSSTKLKQHYNIHTGERPYKCKYCERTFTNYPNWLKHTRRRHKVDHKTGEDLGSKLPKEEIQPSLQPLQQQQPTILQQEPMTQVDNSDQLISDISLTKTEELLIQQGLLNFPLNDEKFSLPQQIDFLAGTSNNTMGVIVPYFQTSLPSHQTLVTNTNNTVPTIQFNDLVHSQYLQQPLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01366544;
90% Identity
-
80% Identity
-